CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 123 | T123I | T4065I | nonsyn | aCa | aTa | 6725 | 6725 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123T | T4065T | syn | acA | acT | 1368 | 1272 | 0.929825 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123T | T4065T | syn | acA | acG | 1368 | 82 | 0.0599415 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123T | T4065T | syn | acA | acC | 1368 | 14 | 0.0102339 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123A | T4065A | nonsyn | Aca | Gca | 444 | 444 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123del | T4065del | del | ACA | --- | 16 | 16 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123V | T4065V | nonsyn | ACa | GTa | 14 | 14 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123del1 | T4065del1 | del | Aca | -ca | 3 | 2 | 0.666667 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123del1 | T4065del1 | del | acA | ac- | 3 | 1 | 0.333333 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123del2 | T4065del2 | del | ACa | --a | 2 | 2 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123R | T4065R | nonsyn | aCa | aGa | 1 | 1 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123K | T4065K | nonsyn | aCa | aAa | 1 | 1 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123S | T4065S | nonsyn | Aca | Tca | 1 | 1 | 1 | 12458-12460 |
ORF1ab/nsp8 | 123 | T123L | T4065L | nonsyn | ACa | TTa | 1 | 1 | 1 | 12458-12460 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6725 | 6725 | All | 0.001286 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1728 | 1728 | B.1.1.7 | 0.001547 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1272 | 1368 | All | 0.000243 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 82 | 1368 | All | 0.000016 |
ORF1ab/nsp8 | 123 | T123T | acA | acC | 14 | 1368 | All | 0.000003 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1209 | 1220 | AY.4 | 0.001882 |
ORF1ab/nsp8 | 123 | T123T | acA | acC | 9 | 1220 | AY.4 | 0.000014 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 2 | 1220 | AY.4 | 0.000003 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 462 | 462 | AY.4 | 0.000719 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 444 | 444 | All | 0.000085 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 406 | 406 | AY.43 | 0.001799 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 371 | 371 | AY.103 | 0.002304 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 206 | 206 | B.1.2 | 0.001814 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 158 | 158 | B.1.617.2 | 0.000595 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 153 | 153 | B.1.177 | 0.002015 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 131 | 131 | AY.120 | 0.00487 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 130 | 130 | B.1.258 | 0.008651 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 129 | 129 | B.1.160 | 0.004023 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 122 | 122 | B.1.36.8 | 0.122 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 117 | 117 | B.1.160.10 | 0.943548 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 102 | 102 | B.1.258.17 | 0.010605 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 102 | 102 | B.1.351 | 0.003032 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 95 | 95 | B.1 | 0.00087 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 88 | 88 | B.1.1.28 | 0.027389 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 83 | 83 | B.1.1 | 0.001506 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 80 | 80 | AY.25 | 0.000481 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 71 | 71 | B.1.629 | 0.946667 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 70 | 70 | B.1.1.7 | 0.000063 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 64 | 64 | AY.44 | 0.00039 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 64 | 64 | P.1 | 0.001008 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 56 | 56 | AY.39 | 0.001384 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 56 | 56 | B.1.438.1 | 0.006007 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 54 | 54 | AY.69 | 0.01008 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 45 | 45 | B.1 | 0.000412 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 44 | 44 | B.1.429 | 0.001035 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 41 | 41 | B.1.1.434 | 0.014291 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 40 | 40 | AY.4.5 | 0.0043 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 40 | 40 | AY.75 | 0.002241 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 37 | 37 | B.1.1.306 | 0.016221 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 37 | 37 | B.1.1.519 | 0.001469 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 35 | 35 | AY.6 | 0.001439 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 26 | 34 | B.1.1.7 | 0.000023 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 8 | 34 | B.1.1.7 | 0.000007 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 33 | 33 | AY.47 | 0.001026 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 33 | 33 | B.1.427 | 0.001666 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 32 | 32 | A.2.5 | 0.015968 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 32 | 32 | AY.3 | 0.000318 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 32 | 32 | B.1.160 | 0.000998 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 31 | 31 | B.1.1.377 | 0.042818 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 31 | 31 | B.1.561 | 0.012306 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 30 | 30 | AY.4.2 | 0.000651 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 29 | 29 | B.1.177.21 | 0.002218 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 29 | 29 | B.1.177.35 | 0.020041 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 26 | 26 | B.1.596 | 0.002266 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 24 | 24 | AY.29 | 0.000379 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 23 | 23 | B.1.243 | 0.0016 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 21 | 21 | B.1.177.10 | 0.018437 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 19 | 19 | AY.117 | 0.001606 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 18 | 18 | B.1.1.230 | 0.165138 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 18 | 18 | B.1.234 | 0.002375 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 17 | 17 | AY.5 | 0.000351 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 17 | 17 | B.1.400 | 0.007293 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 16 | 16 | All | 0.000003 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 16 | 16 | AY.92 | 0.004596 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 13 | 16 | B.1.617.2 | 0.000049 |
ORF1ab/nsp8 | 123 | T123T | acA | acC | 2 | 16 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 16 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 15 | 15 | B.1.1.70 | 0.005116 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 15 | 15 | B.1.177.65 | 0.00998 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 14 | 14 | All | 0.000003 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 14 | 14 | AY.3.1 | 0.001194 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 14 | 14 | R.1 | 0.00126 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 13 | 13 | B.1.1.219 | 0.065 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 13 | 13 | B.1.404 | 0.016927 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 13 | 13 | Q.3 | 0.001885 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 12 | 12 | D.2 | 0.0009 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 10 | 10 | B.1.396 | 0.007057 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 10 | 10 | B.1.621.1 | 0.005058 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 9 | 9 | B.1.236 | 0.01848 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 7 | 8 | AY.39 | 0.000173 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 8 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 8 | 8 | B.1.1.306 | 0.003507 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | AY.93 | 0.001912 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 6 | 7 | B.1.1 | 0.000109 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 7 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | B.1.1.153 | 0.007667 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | B.1.1.63 | 0.002701 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | B.1.177.87 | 0.005095 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | AY.5.1 | 0.022556 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.1.243 | 0.02449 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.160.29 | 0.025316 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.177.57 | 0.001686 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | B.1.634 | 0.020548 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | AY.78 | 0.007704 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp8 | 123 | T123T | acA | acC | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | B.1.1.316 | 0.004625 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 5 | 5 | B.1.1.372 | 0.003444 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 5 | 5 | B.1.1.377 | 0.006906 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 2 | 4 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 2 | 4 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.4.3 | 0.003367 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.67 | 0.001857 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B | 0.000511 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.252 | 0.02649 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.258.7 | 0.007648 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.346 | 0.005242 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.361 | 0.005155 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | C.38 | 0.032258 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp8 | 123 | T123del1 | Aca | -ca | 2 | 3 | All | 0 |
ORF1ab/nsp8 | 123 | T123del1 | acA | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.157 | 0.00274 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.345 | 0.130435 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.258.2 | 0.013514 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.538 | 0.024194 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | B.1.570 | 0.008824 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | A | 0.000774 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp8 | 123 | T123del2 | ACa | --a | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.205 | 0.007435 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.210 | 0.011429 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.261 | 0.017241 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | B.1.1.56 | 0.035714 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.23 | 0.006472 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.25 | 0.029851 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | C.40 | 0.055556 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | A.11 | 0.058824 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp8 | 123 | T123K | aCa | aAa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AA.4 | 0.009091 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp8 | 123 | T123R | aCa | aGa | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 123 | T123S | Aca | Tca | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 123 | T123L | ACa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 123 | T123K | aCa | aAa | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp8 | 123 | T123T | acA | acC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 123 | T123L | ACa | TTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 123 | T123del2 | ACa | --a | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp8 | 123 | T123del1 | Aca | -ca | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.3 | 0.008696 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp8 | 123 | T123del1 | Aca | -ca | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.1.97 | 0.029412 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.66 | 0.041667 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp8 | 123 | T123T | acA | acC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.330 | 0.028571 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.343 | 0.020833 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.435 | 0.011364 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp8 | 123 | T123S | Aca | Tca | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp8 | 123 | T123del2 | ACa | --a | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.13 | 0.045455 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | C.28 | 0.04 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp8 | 123 | T123del1 | acA | ac- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp8 | 123 | T123R | aCa | aGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp8 | 123 | T123del | ACA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 123 | T123T | acA | acG | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp8 | 123 | T123I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp8 | 123 | T123T | acA | acT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp8 | 123 | T123A | Aca | Gca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp8 | 123 | T123V | ACa | GTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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