CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 122 | L122F | L4064F | nonsyn | Ctt | Ttt | 2827 | 2827 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122I | L4064I | nonsyn | Ctt | Att | 1360 | 1360 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122L | L4064L | syn | ctT | ctC | 234 | 141 | 0.602564 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122L | L4064L | syn | ctT | ctA | 234 | 92 | 0.393162 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122L | L4064L | syn | ctT | ctG | 234 | 1 | 0.0042735 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122del | L4064del | del | CTT | --- | 17 | 17 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122P | L4064P | nonsyn | cTt | cCt | 12 | 12 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122R | L4064R | nonsyn | cTt | cGt | 2 | 2 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122V | L4064V | nonsyn | Ctt | Gtt | 2 | 2 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122S | L4064S | nonsyn | CTt | TCt | 2 | 2 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122H | L4064H | nonsyn | cTt | cAt | 2 | 2 | 1 | 12455-12457 |
ORF1ab/nsp8 | 122 | L122del1 | L4064del1 | del | Ctt | -tt | 1 | 1 | 1 | 12455-12457 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2827 | 2827 | All | 0.000541 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2457 | 2457 | B.1.258.11 | 0.973841 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1360 | 1360 | All | 0.00026 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 895 | 895 | B.1.568 | 0.994444 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 141 | 234 | All | 0.000027 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 92 | 234 | All | 0.000018 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctG | 1 | 234 | All | 0 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 231 | 231 | B.1.617.2 | 0.00087 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 114 | 114 | B.1.1.7 | 0.000102 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 63 | 63 | AY.43 | 0.000279 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 28 | 41 | B.1.1.7 | 0.000025 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 13 | 41 | B.1.1.7 | 0.000012 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 35 | 35 | B.1 | 0.000321 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 35 | 35 | B.1.593 | 0.380435 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 30 | 30 | AY.4 | 0.000047 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 27 | 27 | AY.56 | 0.043339 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 17 | 17 | All | 0.000003 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 14 | 14 | B.1.391 | 0.015784 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 12 | 12 | All | 0.000002 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 9 | 9 | B.1.438.1 | 0.000965 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 8 | 8 | B.1.346 | 0.010485 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 6 | 7 | AY.44 | 0.000037 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctG | 1 | 7 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 6 | 6 | B.1.480 | 0.014925 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 6 | 6 | B.1.612 | 0.015915 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp8 | 122 | L122R | cTt | cGt | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 122 | L122S | CTt | TCt | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 122 | L122V | Ctt | Gtt | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 122 | L122H | cTt | cAt | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.22.1 | 0.0625 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp8 | 122 | L122del1 | Ctt | -tt | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp8 | 122 | L122H | cTt | cAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp8 | 122 | L122R | cTt | cGt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.1.130 | 0.015385 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp8 | 122 | L122V | Ctt | Gtt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp8 | 122 | L122R | cTt | cGt | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp8 | 122 | L122S | CTt | TCt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp8 | 122 | L122H | cTt | cAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp8 | 122 | L122V | Ctt | Gtt | 1 | 1 | B.1.494 | 0.034483 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp8 | 122 | L122S | CTt | TCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp8 | 122 | L122del | CTT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp8 | 122 | L122I | Ctt | Att | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp8 | 122 | L122del1 | Ctt | -tt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp8 | 122 | L122F | Ctt | Ttt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp8 | 122 | L122L | ctT | ctC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp8 | 122 | L122P | cTt | cCt | 1 | 1 | S.1 | 0.00495 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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