CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 122

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8122L122FL4064FnonsynCttTtt28272827112455-12457
ORF1ab/nsp8122L122IL4064InonsynCttAtt13601360112455-12457
ORF1ab/nsp8122L122LL4064LsynctTctC2341410.60256412455-12457
ORF1ab/nsp8122L122LL4064LsynctTctA234920.39316212455-12457
ORF1ab/nsp8122L122LL4064LsynctTctG23410.004273512455-12457
ORF1ab/nsp8122L122delL4064deldelCTT---1717112455-12457
ORF1ab/nsp8122L122PL4064PnonsyncTtcCt1212112455-12457
ORF1ab/nsp8122L122RL4064RnonsyncTtcGt22112455-12457
ORF1ab/nsp8122L122VL4064VnonsynCttGtt22112455-12457
ORF1ab/nsp8122L122SL4064SnonsynCTtTCt22112455-12457
ORF1ab/nsp8122L122HL4064HnonsyncTtcAt22112455-12457
ORF1ab/nsp8122L122del1L4064del1delCtt-tt11112455-12457

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8122L122FCttTtt28272827All0.000541
ORF1ab/nsp8122L122FCttTtt24572457B.1.258.110.973841
ORF1ab/nsp8122L122ICttAtt13601360All0.00026
ORF1ab/nsp8122L122ICttAtt895895B.1.5680.994444
ORF1ab/nsp8122L122LctTctC141234All0.000027
ORF1ab/nsp8122L122LctTctA92234All0.000018
ORF1ab/nsp8122L122LctTctG1234All0
ORF1ab/nsp8122L122ICttAtt231231B.1.617.20.00087
ORF1ab/nsp8122L122FCttTtt114114B.1.1.70.000102
ORF1ab/nsp8122L122ICttAtt6363AY.430.000279
ORF1ab/nsp8122L122LctTctA2841B.1.1.70.000025
ORF1ab/nsp8122L122LctTctC1341B.1.1.70.000012
ORF1ab/nsp8122L122LctTctC4040AY.40.000062
ORF1ab/nsp8122L122ICttAtt3535B.10.000321
ORF1ab/nsp8122L122LctTctA3535B.1.5930.380435
ORF1ab/nsp8122L122FCttTtt3030AY.40.000047
ORF1ab/nsp8122L122ICttAtt2727AY.560.043339
ORF1ab/nsp8122L122ICttAtt2626AY.290.00041
ORF1ab/nsp8122L122FCttTtt2626B.1.1.5190.001032
ORF1ab/nsp8122L122delCTT---1717All0.000003
ORF1ab/nsp8122L122FCttTtt1717AY.1030.000106
ORF1ab/nsp8122L122LctTctC1717B.1.20.00015
ORF1ab/nsp8122L122FCttTtt1515P.10.000236
ORF1ab/nsp8122L122FCttTtt1414B.10.000128
ORF1ab/nsp8122L122FCttTtt1414B.1.3910.015784
ORF1ab/nsp8122L122PcTtcCt1212All0.000002
ORF1ab/nsp8122L122FCttTtt1212B.1.20.000106
ORF1ab/nsp8122L122ICttAtt1111B.1.1.70.00001
ORF1ab/nsp8122L122FCttTtt1010AY.430.000044
ORF1ab/nsp8122L122FCttTtt1010B.1.1770.000132
ORF1ab/nsp8122L122LctTctA99B.1.438.10.000965
ORF1ab/nsp8122L122LctTctC99P.10.000142
ORF1ab/nsp8122L122FCttTtt88AY.250.000048
ORF1ab/nsp8122L122LctTctC88AY.430.000035
ORF1ab/nsp8122L122FCttTtt88B.1.3460.010485
ORF1ab/nsp8122L122ICttAtt77AY.39.10.000277
ORF1ab/nsp8122L122LctTctC67AY.440.000037
ORF1ab/nsp8122L122LctTctG17AY.440.000006
ORF1ab/nsp8122L122FCttTtt77B.1.5260.000165
ORF1ab/nsp8122L122ICttAtt66AY.40.000009
ORF1ab/nsp8122L122LctTctA66B.1.4800.014925
ORF1ab/nsp8122L122ICttAtt66B.1.6120.015915
ORF1ab/nsp8122L122LctTctC55AY.470.000156
ORF1ab/nsp8122L122LctTctC55AY.530.001438
ORF1ab/nsp8122L122ICttAtt55B.1.1770.000066
ORF1ab/nsp8122L122LctTctC55B.1.258.170.00052
ORF1ab/nsp8122L122LctTctA55C.360.004554
ORF1ab/nsp8122L122ICttAtt44AY.420.000161
ORF1ab/nsp8122L122PcTtcCt44B.10.000037
ORF1ab/nsp8122L122LctTctC34B.1.10.000054
ORF1ab/nsp8122L122LctTctA14B.1.10.000018
ORF1ab/nsp8122L122LctTctA44B.1.1.500.002716
ORF1ab/nsp8122L122FCttTtt44B.1.1600.000125
ORF1ab/nsp8122L122FCttTtt44B.1.5250.000453
ORF1ab/nsp8122L122FCttTtt44B.1.617.20.000015
ORF1ab/nsp8122L122FCttTtt33AE.80.001467
ORF1ab/nsp8122L122LctTctC33AY.250.000018
ORF1ab/nsp8122L122LctTctC33AY.370.000948
ORF1ab/nsp8122L122ICttAtt33AY.390.000074
ORF1ab/nsp8122L122ICttAtt33AY.400.002893
ORF1ab/nsp8122L122FCttTtt33AY.440.000018
ORF1ab/nsp8122L122ICttAtt33AY.99.20.000276
ORF1ab/nsp8122L122FCttTtt33B.1.1.3170.001235
ORF1ab/nsp8122L122delCTT---33B.1.1.70.000003
ORF1ab/nsp8122L122delCTT---33B.1.1770.00004
ORF1ab/nsp8122L122LctTctC33B.1.5960.000261
ORF1ab/nsp8122L122LctTctC33B.1.617.20.000011
ORF1ab/nsp8122L122RcTtcGt22All0
ORF1ab/nsp8122L122SCTtTCt22All0
ORF1ab/nsp8122L122VCttGtt22All0
ORF1ab/nsp8122L122HcTtcAt22All0
ORF1ab/nsp8122L122LctTctC22AY.360.000296
ORF1ab/nsp8122L122FCttTtt22AY.390.000049
ORF1ab/nsp8122L122ICttAtt22AY.610.00021
ORF1ab/nsp8122L122delCTT---22AY.750.000112
ORF1ab/nsp8122L122FCttTtt22B.1.10.000036
ORF1ab/nsp8122L122PcTtcCt22B.1.10.000036
ORF1ab/nsp8122L122LctTctC22B.1.1.250.001137
ORF1ab/nsp8122L122FCttTtt22B.1.177.60.001953
ORF1ab/nsp8122L122FCttTtt22B.1.22.10.0625
ORF1ab/nsp8122L122LctTctC22B.1.2210.000142
ORF1ab/nsp8122L122FCttTtt22B.1.2410.001623
ORF1ab/nsp8122L122FCttTtt22B.1.2580.000133
ORF1ab/nsp8122L122ICttAtt22B.1.3510.000059
ORF1ab/nsp8122L122FCttTtt22B.1.3510.000059
ORF1ab/nsp8122L122FCttTtt22B.1.4290.000047
ORF1ab/nsp8122L122ICttAtt22B.1.5960.000174
ORF1ab/nsp8122L122FCttTtt22B.1.5970.009259
ORF1ab/nsp8122L122FCttTtt22C.10.004785
ORF1ab/nsp8122L122ICttAtt22P.1.10.000635
ORF1ab/nsp8122L122FCttTtt22P.1.100.000539
ORF1ab/nsp8122L122FCttTtt22Q.80.00033
ORF1ab/nsp8122L122ICttAtt11A0.000387
ORF1ab/nsp8122L122del1Ctt-tt11All0
ORF1ab/nsp8122L122FCttTtt11AY.1020.000027
ORF1ab/nsp8122L122ICttAtt11AY.1020.000027
ORF1ab/nsp8122L122LctTctC11AY.1030.000006
ORF1ab/nsp8122L122ICttAtt11AY.1140.000231
ORF1ab/nsp8122L122HcTtcAt11AY.1170.000085
ORF1ab/nsp8122L122LctTctA11AY.1200.000037
ORF1ab/nsp8122L122delCTT---11AY.1200.000037
ORF1ab/nsp8122L122FCttTtt11AY.1200.000037
ORF1ab/nsp8122L122ICttAtt11AY.16.10.00047
ORF1ab/nsp8122L122LctTctC11AY.200.000039
ORF1ab/nsp8122L122ICttAtt11AY.230.00007
ORF1ab/nsp8122L122LctTctC11AY.230.00007
ORF1ab/nsp8122L122FCttTtt11AY.230.00007
ORF1ab/nsp8122L122RcTtcGt11AY.240.000431
ORF1ab/nsp8122L122LctTctC11AY.240.000431
ORF1ab/nsp8122L122ICttAtt11AY.250.000006
ORF1ab/nsp8122L122delCTT---11AY.250.000006
ORF1ab/nsp8122L122ICttAtt11AY.260.000028
ORF1ab/nsp8122L122ICttAtt11AY.29.10.000221
ORF1ab/nsp8122L122FCttTtt11AY.29.10.000221
ORF1ab/nsp8122L122FCttTtt11AY.30.00001
ORF1ab/nsp8122L122FCttTtt11AY.3.10.000085
ORF1ab/nsp8122L122ICttAtt11AY.320.000532
ORF1ab/nsp8122L122PcTtcCt11AY.40.000002
ORF1ab/nsp8122L122ICttAtt11AY.4.10.000737
ORF1ab/nsp8122L122FCttTtt11AY.4.20.000022
ORF1ab/nsp8122L122ICttAtt11AY.4.50.000107
ORF1ab/nsp8122L122LctTctC11AY.400.000964
ORF1ab/nsp8122L122delCTT---11AY.440.000006
ORF1ab/nsp8122L122FCttTtt11AY.460.000104
ORF1ab/nsp8122L122ICttAtt11AY.46.20.000635
ORF1ab/nsp8122L122FCttTtt11AY.46.50.000198
ORF1ab/nsp8122L122ICttAtt11AY.50.000021
ORF1ab/nsp8122L122FCttTtt11AY.50.000021
ORF1ab/nsp8122L122ICttAtt11AY.520.000814
ORF1ab/nsp8122L122FCttTtt11AY.540.000095
ORF1ab/nsp8122L122ICttAtt11AY.540.000095
ORF1ab/nsp8122L122FCttTtt11AY.670.000464
ORF1ab/nsp8122L122FCttTtt11AY.750.000056
ORF1ab/nsp8122L122LctTctC11AY.750.000056
ORF1ab/nsp8122L122delCTT---11AY.80.000606
ORF1ab/nsp8122L122FCttTtt11AY.9.20.000037
ORF1ab/nsp8122L122ICttAtt11B0.000128
ORF1ab/nsp8122L122LctTctA11B.10.000009
ORF1ab/nsp8122L122ICttAtt11B.1.10.000018
ORF1ab/nsp8122L122FCttTtt11B.1.1.10.000327
ORF1ab/nsp8122L122FCttTtt11B.1.1.1300.015385
ORF1ab/nsp8122L122delCTT---11B.1.1.1390.022727
ORF1ab/nsp8122L122LctTctC11B.1.1.1760.000439
ORF1ab/nsp8122L122FCttTtt11B.1.1.2140.000055
ORF1ab/nsp8122L122FCttTtt11B.1.1.2220.000204
ORF1ab/nsp8122L122VCttGtt11B.1.1.250.000569
ORF1ab/nsp8122L122RcTtcGt11B.1.1.3000.010753
ORF1ab/nsp8122L122SCTtTCt11B.1.1.3060.000438
ORF1ab/nsp8122L122LctTctC11B.1.1.3720.000689
ORF1ab/nsp8122L122ICttAtt11B.1.1.4090.002833
ORF1ab/nsp8122L122delCTT---11B.1.1.4480.002033
ORF1ab/nsp8122L122ICttAtt11B.1.1.4870.005587
ORF1ab/nsp8122L122FCttTtt11B.1.1.720.030303
ORF1ab/nsp8122L122FCttTtt11B.1.1470.000756
ORF1ab/nsp8122L122PcTtcCt11B.1.1600.000031
ORF1ab/nsp8122L122FCttTtt11B.1.177.120.000152
ORF1ab/nsp8122L122FCttTtt11B.1.177.160.000664
ORF1ab/nsp8122L122FCttTtt11B.1.177.440.000519
ORF1ab/nsp8122L122delCTT---11B.1.177.90.001332
ORF1ab/nsp8122L122HcTtcAt11B.1.20.000009
ORF1ab/nsp8122L122ICttAtt11B.1.20.000009
ORF1ab/nsp8122L122ICttAtt11B.1.2120.016667
ORF1ab/nsp8122L122FCttTtt11B.1.2360.002053
ORF1ab/nsp8122L122ICttAtt11B.1.2430.00007
ORF1ab/nsp8122L122LctTctC11B.1.2580.000067
ORF1ab/nsp8122L122FCttTtt11B.1.2600.003344
ORF1ab/nsp8122L122ICttAtt11B.1.3010.005917
ORF1ab/nsp8122L122LctTctC11B.1.3510.00003
ORF1ab/nsp8122L122FCttTtt11B.1.351.20.000303
ORF1ab/nsp8122L122FCttTtt11B.1.36.10.00114
ORF1ab/nsp8122L122FCttTtt11B.1.36.380.001642
ORF1ab/nsp8122L122ICttAtt11B.1.3670.000792
ORF1ab/nsp8122L122LctTctA11B.1.4290.000024
ORF1ab/nsp8122L122ICttAtt11B.1.4290.000024
ORF1ab/nsp8122L122FCttTtt11B.1.466.20.000391
ORF1ab/nsp8122L122PcTtcCt11B.1.4680.005714
ORF1ab/nsp8122L122VCttGtt11B.1.4940.034483
ORF1ab/nsp8122L122LctTctA11B.1.5260.000024
ORF1ab/nsp8122L122FCttTtt11B.1.5610.000397
ORF1ab/nsp8122L122FCttTtt11B.1.5640.000426
ORF1ab/nsp8122L122ICttAtt11B.1.5750.000303
ORF1ab/nsp8122L122FCttTtt11B.1.5900.004545
ORF1ab/nsp8122L122FCttTtt11B.1.5950.000261
ORF1ab/nsp8122L122LctTctC11B.1.6090.000479
ORF1ab/nsp8122L122FCttTtt11B.1.6090.000479
ORF1ab/nsp8122L122SCTtTCt11B.1.617.20.000004
ORF1ab/nsp8122L122delCTT---11B.1.617.20.000004
ORF1ab/nsp8122L122FCttTtt11B.1.6210.000089
ORF1ab/nsp8122L122PcTtcCt11B.1.6210.000089
ORF1ab/nsp8122L122FCttTtt11B.280.003279
ORF1ab/nsp8122L122PcTtcCt11B.4.50.011905
ORF1ab/nsp8122L122FCttTtt11C.370.000116
ORF1ab/nsp8122L122delCTT---11N.40.004255
ORF1ab/nsp8122L122FCttTtt11P.1.120.000484
ORF1ab/nsp8122L122ICttAtt11P.1.140.000048
ORF1ab/nsp8122L122FCttTtt11P.1.170.000162
ORF1ab/nsp8122L122del1Ctt-tt11Q.80.000165
ORF1ab/nsp8122L122FCttTtt11R.10.00009
ORF1ab/nsp8122L122LctTctC11R.10.00009
ORF1ab/nsp8122L122PcTtcCt11S.10.00495