CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 105 | N105N | N4047N | syn | aaC | aaT | 3018 | 3018 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105S | N4047S | nonsyn | aAc | aGc | 59 | 59 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105del | N4047del | del | AAC | --- | 10 | 10 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105T | N4047T | nonsyn | aAc | aCc | 8 | 8 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105K | N4047K | nonsyn | aaC | aaA | 7 | 7 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105I | N4047I | nonsyn | aAc | aTc | 6 | 6 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105D | N4047D | nonsyn | Aac | Gac | 4 | 4 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105Y | N4047Y | nonsyn | Aac | Tac | 2 | 2 | 1 | 12404-12406 |
ORF1ab/nsp8 | 105 | N105H | N4047H | nonsyn | Aac | Cac | 1 | 1 | 1 | 12404-12406 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3018 | 3018 | All | 0.000577 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1811 | 1811 | B.1.1.7 | 0.001621 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 196 | 196 | L.3 | 0.695035 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 116 | 116 | B.1.177.65 | 0.077179 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 97 | 97 | AY.75 | 0.005434 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 82 | 82 | B.1.617.2 | 0.000309 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 74 | 74 | AY.4 | 0.000115 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 72 | 72 | AY.46.6 | 0.005199 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 69 | 69 | AY.103 | 0.000428 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 69 | 69 | B.1.2 | 0.000608 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 69 | 69 | B.1.258.17 | 0.007174 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 69 | 69 | B.1.349 | 0.049321 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 59 | 59 | All | 0.000011 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 10 | 10 | All | 0.000002 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp8 | 105 | N105T | aAc | aCc | 8 | 8 | All | 0.000002 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 7 | 7 | All | 0.000001 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp8 | 105 | N105I | aAc | aTc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp8 | 105 | N105D | Aac | Gac | 4 | 4 | All | 0.000001 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 4 | 4 | B.1.1.141 | 0.008048 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp8 | 105 | N105T | aAc | aCc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp8 | 105 | N105Y | Aac | Tac | 2 | 2 | All | 0 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp8 | 105 | N105I | aAc | aTc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp8 | 105 | N105T | aAc | aCc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | B.4.7 | 0.020202 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp8 | 105 | N105H | Aac | Cac | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp8 | 105 | N105D | Aac | Gac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp8 | 105 | N105Y | Aac | Tac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp8 | 105 | N105Y | Aac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp8 | 105 | N105I | aAc | aTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp8 | 105 | N105S | aAc | aGc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp8 | 105 | N105H | Aac | Cac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 105 | N105I | aAc | aTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 105 | N105D | Aac | Gac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp8 | 105 | N105T | aAc | aCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 105 | N105D | Aac | Gac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 105 | N105I | aAc | aTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp8 | 105 | N105T | aAc | aCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp8 | 105 | N105D | Aac | Gac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 105 | N105K | aaC | aaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 105 | N105I | aAc | aTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp8 | 105 | N105T | aAc | aCc | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp8 | 105 | N105del | AAC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp8 | 105 | N105N | aaC | aaT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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