CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 105

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8105N105NN4047NsynaaCaaT30183018112404-12406
ORF1ab/nsp8105N105SN4047SnonsynaAcaGc5959112404-12406
ORF1ab/nsp8105N105delN4047deldelAAC---1010112404-12406
ORF1ab/nsp8105N105TN4047TnonsynaAcaCc88112404-12406
ORF1ab/nsp8105N105KN4047KnonsynaaCaaA77112404-12406
ORF1ab/nsp8105N105IN4047InonsynaAcaTc66112404-12406
ORF1ab/nsp8105N105DN4047DnonsynAacGac44112404-12406
ORF1ab/nsp8105N105YN4047YnonsynAacTac22112404-12406
ORF1ab/nsp8105N105HN4047HnonsynAacCac11112404-12406

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8105N105NaaCaaT30183018All0.000577
ORF1ab/nsp8105N105NaaCaaT18111811B.1.1.70.001621
ORF1ab/nsp8105N105NaaCaaT196196L.30.695035
ORF1ab/nsp8105N105NaaCaaT116116B.1.177.650.077179
ORF1ab/nsp8105N105NaaCaaT9797AY.750.005434
ORF1ab/nsp8105N105NaaCaaT8282B.1.617.20.000309
ORF1ab/nsp8105N105NaaCaaT7474AY.40.000115
ORF1ab/nsp8105N105NaaCaaT7272AY.46.60.005199
ORF1ab/nsp8105N105NaaCaaT6969AY.1030.000428
ORF1ab/nsp8105N105NaaCaaT6969B.1.20.000608
ORF1ab/nsp8105N105NaaCaaT6969B.1.258.170.007174
ORF1ab/nsp8105N105NaaCaaT6969B.1.3490.049321
ORF1ab/nsp8105N105SaAcaGc5959All0.000011
ORF1ab/nsp8105N105NaaCaaT3232B.1.1770.000421
ORF1ab/nsp8105N105NaaCaaT2323B.10.000211
ORF1ab/nsp8105N105NaaCaaT1818AY.1020.000477
ORF1ab/nsp8105N105NaaCaaT1818AY.200.0007
ORF1ab/nsp8105N105SaAcaGc1717B.1.1.70.000015
ORF1ab/nsp8105N105NaaCaaT1616AY.30.000159
ORF1ab/nsp8105N105NaaCaaT1515AY.440.000091
ORF1ab/nsp8105N105NaaCaaT1313AY.430.000058
ORF1ab/nsp8105N105delAAC---1010All0.000002
ORF1ab/nsp8105N105SaAcaGc1010AY.39.10.000396
ORF1ab/nsp8105N105SaAcaGc1010AY.40.000016
ORF1ab/nsp8105N105TaAcaCc88All0.000002
ORF1ab/nsp8105N105KaaCaaA77All0.000001
ORF1ab/nsp8105N105NaaCaaT77AY.1180.000439
ORF1ab/nsp8105N105NaaCaaT77AY.1200.00026
ORF1ab/nsp8105N105NaaCaaT77B.1.5260.000165
ORF1ab/nsp8105N105IaAcaTc66All0.000001
ORF1ab/nsp8105N105NaaCaaT66AY.250.000036
ORF1ab/nsp8105N105NaaCaaT66B.1.5250.000679
ORF1ab/nsp8105N105NaaCaaT55AY.1190.000177
ORF1ab/nsp8105N105DAacGac44All0.000001
ORF1ab/nsp8105N105NaaCaaT44AY.390.000099
ORF1ab/nsp8105N105NaaCaaT44AY.4.50.00043
ORF1ab/nsp8105N105NaaCaaT44B.1.10.000073
ORF1ab/nsp8105N105NaaCaaT44B.1.1.1410.008048
ORF1ab/nsp8105N105NaaCaaT44Q.10.000505
ORF1ab/nsp8105N105NaaCaaT33AY.1000.000138
ORF1ab/nsp8105N105NaaCaaT33AY.290.000047
ORF1ab/nsp8105N105NaaCaaT33AY.360.000445
ORF1ab/nsp8105N105SaAcaGc33AY.440.000018
ORF1ab/nsp8105N105SaAcaGc33B.10.000027
ORF1ab/nsp8105N105NaaCaaT33B.1.1.4340.001046
ORF1ab/nsp8105N105NaaCaaT33B.1.1.700.001023
ORF1ab/nsp8105N105TaAcaCc33B.1.1770.00004
ORF1ab/nsp8105N105NaaCaaT33B.1.5750.00091
ORF1ab/nsp8105N105NaaCaaT33B.1.6210.000266
ORF1ab/nsp8105N105YAacTac22All0
ORF1ab/nsp8105N105SaAcaGc22AY.1030.000012
ORF1ab/nsp8105N105NaaCaaT22AY.1160.000574
ORF1ab/nsp8105N105NaaCaaT22AY.1210.000271
ORF1ab/nsp8105N105delAAC---22AY.250.000012
ORF1ab/nsp8105N105NaaCaaT22AY.270.000129
ORF1ab/nsp8105N105NaaCaaT22AY.5.40.000553
ORF1ab/nsp8105N105NaaCaaT22AY.60.000082
ORF1ab/nsp8105N105NaaCaaT22AY.75.10.000361
ORF1ab/nsp8105N105NaaCaaT22AY.98.10.000097
ORF1ab/nsp8105N105KaaCaaA22B.10.000018
ORF1ab/nsp8105N105NaaCaaT22B.1.1.100.00223
ORF1ab/nsp8105N105SaAcaGc22B.1.1.5190.000079
ORF1ab/nsp8105N105NaaCaaT22B.1.1600.000062
ORF1ab/nsp8105N105delAAC---22B.1.1770.000026
ORF1ab/nsp8105N105IaAcaTc22B.1.1770.000026
ORF1ab/nsp8105N105NaaCaaT22B.1.177.440.001038
ORF1ab/nsp8105N105SaAcaGc22B.1.20.000018
ORF1ab/nsp8105N105NaaCaaT22B.1.2210.000142
ORF1ab/nsp8105N105NaaCaaT22B.1.2430.000139
ORF1ab/nsp8105N105NaaCaaT22B.1.2580.000133
ORF1ab/nsp8105N105NaaCaaT22B.1.3510.000059
ORF1ab/nsp8105N105NaaCaaT22B.1.351.30.001753
ORF1ab/nsp8105N105NaaCaaT22B.1.4290.000047
ORF1ab/nsp8105N105SaAcaGc22B.1.5260.000047
ORF1ab/nsp8105N105SaAcaGc22B.1.617.10.000258
ORF1ab/nsp8105N105TaAcaCc22B.1.617.20.000008
ORF1ab/nsp8105N105NaaCaaT22B.4.70.020202
ORF1ab/nsp8105N105SaAcaGc22B.400.000729
ORF1ab/nsp8105N105NaaCaaT22D.20.00015
ORF1ab/nsp8105N105NaaCaaT22P.10.000032
ORF1ab/nsp8105N105KaaCaaA110.055556
ORF1ab/nsp8105N105NaaCaaT11A.20.000662
ORF1ab/nsp8105N105NaaCaaT11AD.20.000219
ORF1ab/nsp8105N105HAacCac11All0
ORF1ab/nsp8105N105SaAcaGc11AY.1000.000046
ORF1ab/nsp8105N105NaaCaaT11AY.1090.00074
ORF1ab/nsp8105N105NaaCaaT11AY.1110.000183
ORF1ab/nsp8105N105NaaCaaT11AY.1170.000085
ORF1ab/nsp8105N105DAacGac11AY.1180.000063
ORF1ab/nsp8105N105delAAC---11AY.1200.000037
ORF1ab/nsp8105N105NaaCaaT11AY.130.000161
ORF1ab/nsp8105N105NaaCaaT11AY.16.10.00047
ORF1ab/nsp8105N105YAacTac11AY.250.000006
ORF1ab/nsp8105N105KaaCaaA11AY.250.000006
ORF1ab/nsp8105N105NaaCaaT11AY.260.000028
ORF1ab/nsp8105N105SaAcaGc11AY.300.000396
ORF1ab/nsp8105N105YAacTac11AY.34.10.00051
ORF1ab/nsp8105N105IaAcaTc11AY.40.000002
ORF1ab/nsp8105N105NaaCaaT11AY.420.00004
ORF1ab/nsp8105N105delAAC---11AY.440.000006
ORF1ab/nsp8105N105NaaCaaT11AY.460.000104
ORF1ab/nsp8105N105SaAcaGc11AY.46.40.000165
ORF1ab/nsp8105N105NaaCaaT11AY.470.000031
ORF1ab/nsp8105N105NaaCaaT11AY.50.000021
ORF1ab/nsp8105N105NaaCaaT11AY.540.000095
ORF1ab/nsp8105N105SaAcaGc11AY.60.000041
ORF1ab/nsp8105N105NaaCaaT11AY.690.000187
ORF1ab/nsp8105N105NaaCaaT11AY.700.000209
ORF1ab/nsp8105N105NaaCaaT11AY.790.001211
ORF1ab/nsp8105N105delAAC---11AY.80.000606
ORF1ab/nsp8105N105NaaCaaT11AY.9.20.000037
ORF1ab/nsp8105N105HAacCac11B0.000128
ORF1ab/nsp8105N105IaAcaTc11B.10.000009
ORF1ab/nsp8105N105DAacGac11B.10.000009
ORF1ab/nsp8105N105KaaCaaA11B.1.10.000018
ORF1ab/nsp8105N105NaaCaaT11B.1.1.10.000327
ORF1ab/nsp8105N105NaaCaaT11B.1.1.2140.000055
ORF1ab/nsp8105N105NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp8105N105NaaCaaT11B.1.1.330.000421
ORF1ab/nsp8105N105NaaCaaT11B.1.1.4020.011111
ORF1ab/nsp8105N105NaaCaaT11B.1.1.4090.002833
ORF1ab/nsp8105N105TaAcaCc11B.1.1.70.000001
ORF1ab/nsp8105N105NaaCaaT11B.1.120.008
ORF1ab/nsp8105N105NaaCaaT11B.1.1470.000756
ORF1ab/nsp8105N105NaaCaaT11B.1.177.310.011494
ORF1ab/nsp8105N105NaaCaaT11B.1.177.560.000668
ORF1ab/nsp8105N105NaaCaaT11B.1.177.60.000977
ORF1ab/nsp8105N105NaaCaaT11B.1.177.730.000566
ORF1ab/nsp8105N105KaaCaaA11B.1.20.000009
ORF1ab/nsp8105N105DAacGac11B.1.20.000009
ORF1ab/nsp8105N105IaAcaTc11B.1.20.000009
ORF1ab/nsp8105N105delAAC---11B.1.20.000009
ORF1ab/nsp8105N105NaaCaaT11B.1.2220.001692
ORF1ab/nsp8105N105NaaCaaT11B.1.360.000146
ORF1ab/nsp8105N105NaaCaaT11B.1.3690.000285
ORF1ab/nsp8105N105NaaCaaT11B.1.4090.000781
ORF1ab/nsp8105N105NaaCaaT11B.1.438.10.000107
ORF1ab/nsp8105N105TaAcaCc11B.1.5260.000024
ORF1ab/nsp8105N105NaaCaaT11B.1.5330.009615
ORF1ab/nsp8105N105DAacGac11B.1.5610.000397
ORF1ab/nsp8105N105NaaCaaT11B.1.5960.000087
ORF1ab/nsp8105N105KaaCaaA11B.1.617.20.000004
ORF1ab/nsp8105N105delAAC---11B.1.617.20.000004
ORF1ab/nsp8105N105IaAcaTc11B.1.617.20.000004
ORF1ab/nsp8105N105NaaCaaT11B.1.6360.006711
ORF1ab/nsp8105N105NaaCaaT11B.1.88.10.004808
ORF1ab/nsp8105N105TaAcaCc11C.140.004329
ORF1ab/nsp8105N105delAAC---11N.40.004255
ORF1ab/nsp8105N105NaaCaaT11N.50.001767
ORF1ab/nsp8105N105NaaCaaT11P.1.110.010204
ORF1ab/nsp8105N105NaaCaaT11P.1.140.000048
ORF1ab/nsp8105N105NaaCaaT11Z.10.00289