CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 103 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp8103L103LL4045LsynctCctA133058780.065990212398-12400

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp8103L103LctCctA87813305All0.000168
ORF1ab/nsp8103L103LctCctA54486B.1.1.70.000004
ORF1ab/nsp8103L103LctCctA499848B.1.617.20.001879
ORF1ab/nsp8103L103LctCctA2766AY.40.000003
ORF1ab/nsp8103L103LctCctA2679AY.430.000009
ORF1ab/nsp8103L103LctCctA1276B.1.20.000009
ORF1ab/nsp8103L103LctCctA7220B.10.000064
ORF1ab/nsp8103L103LctCctA1212AY.250.000006
ORF1ab/nsp8103L103LctCctA197200AY.140.017338
ORF1ab/nsp8103L103LctCctA72110AY.1020.001909
ORF1ab/nsp8103L103LctCctA8107AY.440.000049
ORF1ab/nsp8103L103LctCctA193P.10.000016
ORF1ab/nsp8103L103LctCctA3159AY.1170.00262
ORF1ab/nsp8103L103LctCctA232AY.470.000062
ORF1ab/nsp8103L103LctCctA631AY.390.000148
ORF1ab/nsp8103L103LctCctA824AY.1200.000297
ORF1ab/nsp8103L103LctCctA121AY.260.000028
ORF1ab/nsp8103L103LctCctA121B.1.3510.00003
ORF1ab/nsp8103L103LctCctA420P.1.150.000929
ORF1ab/nsp8103L103LctCctA118AY.450.000122
ORF1ab/nsp8103L103LctCctA118B.1.1.3180.000302
ORF1ab/nsp8103L103LctCctA116B.1.2430.00007
ORF1ab/nsp8103L103LctCctA116B.1.5960.000087
ORF1ab/nsp8103L103LctCctA29AY.1100.000225
ORF1ab/nsp8103L103LctCctA19B0.000128
ORF1ab/nsp8103L103LctCctA67AY.1070.002796
ORF1ab/nsp8103L103LctCctA17B.1.177.810.000189
ORF1ab/nsp8103L103LctCctA26AY.540.000191
ORF1ab/nsp8103L103LctCctA15AY.130.000161
ORF1ab/nsp8103L103LctCctA15AY.3.10.000085
ORF1ab/nsp8103L103LctCctA24AY.630.000774
ORF1ab/nsp8103L103LctCctA14B.1.3960.000706
ORF1ab/nsp8103L103LctCctA13AY.520.000814
ORF1ab/nsp8103L103LctCctA13AY.710.000475
ORF1ab/nsp8103L103LctCctA12AY.620.000436
ORF1ab/nsp8103L103LctCctA12B.1.3750.00082
ORF1ab/nsp8103L103LctCctA12B.60.00091
ORF1ab/nsp8103L103LctCctA11A0.000387
ORF1ab/nsp8103L103LctCctA11B.1.1.4370.010417
ORF1ab/nsp8103L103LctCctA11B.1.3010.005917
ORF1ab/nsp8103L103LctCctA11B.1.3670.000792

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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