CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 103

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp8	103	L103L	L4045L	syn	ctC	ctT	13305	12402	0.932131	12398-12400
ORF1ab/nsp8	103	L103L	L4045L	syn	ctC	ctA	13305	878	0.0659902	12398-12400
ORF1ab/nsp8	103	L103L	L4045L	syn	ctC	ctG	13305	24	0.00180383	12398-12400
ORF1ab/nsp8	103	L103L	L4045L	syn	CtC	TtA	13305	1	0.0000751597	12398-12400
ORF1ab/nsp8	103	L103I	L4045I	nonsyn	Ctc	Atc	67	67	1	12398-12400
ORF1ab/nsp8	103	L103F	L4045F	nonsyn	Ctc	Ttc	19	19	1	12398-12400
ORF1ab/nsp8	103	L103del	L4045del	del	CTC	---	12	12	1	12398-12400
ORF1ab/nsp8	103	L103P	L4045P	nonsyn	cTc	cCc	8	8	1	12398-12400
ORF1ab/nsp8	103	L103del1	L4045del1	del	cTc	c-c	5	2	0.4	12398-12400
ORF1ab/nsp8	103	L103del1	L4045del1	del	ctC	ct-	5	2	0.4	12398-12400
ORF1ab/nsp8	103	L103del1	L4045del1	del	cTC	cC-	5	1	0.2	12398-12400
ORF1ab/nsp8	103	L103H	L4045H	nonsyn	cTc	cAc	4	4	1	12398-12400
ORF1ab/nsp8	103	L103R	L4045R	nonsyn	cTc	cGc	2	1	0.5	12398-12400
ORF1ab/nsp8	103	L103R	L4045R	nonsyn	CTC	AGA	2	1	0.5	12398-12400
ORF1ab/nsp8	103	L103Q	L4045Q	nonsyn	cTC	cAA	1	1	1	12398-12400
ORF1ab/nsp8	103	L103N	L4045N	nonsyn	CTc	AAc	1	1	1	12398-12400
ORF1ab/nsp8	103	L103V	L4045V	nonsyn	Ctc	Gtc	1	1	1	12398-12400

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp8	103	L103L	ctC	ctT	12402	13305	All	0.002372
ORF1ab/nsp8	103	L103L	ctC	ctA	878	13305	All	0.000168
ORF1ab/nsp8	103	L103L	ctC	ctG	24	13305	All	0.000005
ORF1ab/nsp8	103	L103L	CtC	TtA	1	13305	All	0
ORF1ab/nsp8	103	L103L	ctC	ctT	4480	4486	B.1.1.7	0.004011
ORF1ab/nsp8	103	L103L	ctC	ctA	5	4486	B.1.1.7	0.000004
ORF1ab/nsp8	103	L103L	ctC	ctG	1	4486	B.1.1.7	0.000001
ORF1ab/nsp8	103	L103L	ctC	ctT	1205	1205	AZ.2	0.989327
ORF1ab/nsp8	103	L103L	ctC	ctA	499	848	B.1.617.2	0.001879
ORF1ab/nsp8	103	L103L	ctC	ctT	347	848	B.1.617.2	0.001307
ORF1ab/nsp8	103	L103L	ctC	ctG	1	848	B.1.617.2	0.000004
ORF1ab/nsp8	103	L103L	CtC	TtA	1	848	B.1.617.2	0.000004
ORF1ab/nsp8	103	L103L	ctC	ctT	747	766	AY.4	0.001163
ORF1ab/nsp8	103	L103L	ctC	ctG	17	766	AY.4	0.000026
ORF1ab/nsp8	103	L103L	ctC	ctA	2	766	AY.4	0.000003
ORF1ab/nsp8	103	L103L	ctC	ctT	677	679	AY.43	0.002999
ORF1ab/nsp8	103	L103L	ctC	ctA	2	679	AY.43	0.000009
ORF1ab/nsp8	103	L103L	ctC	ctT	366	366	B.1.36	0.053399
ORF1ab/nsp8	103	L103L	ctC	ctT	275	276	B.1.2	0.002421
ORF1ab/nsp8	103	L103L	ctC	ctA	1	276	B.1.2	0.000009
ORF1ab/nsp8	103	L103L	ctC	ctT	272	272	AY.9	0.018386
ORF1ab/nsp8	103	L103L	ctC	ctT	272	272	B.1.595	0.070981
ORF1ab/nsp8	103	L103L	ctC	ctT	236	236	B.1.1.337	0.848921
ORF1ab/nsp8	103	L103L	ctC	ctT	213	220	B.1	0.001951
ORF1ab/nsp8	103	L103L	ctC	ctA	7	220	B.1	0.000064
ORF1ab/nsp8	103	L103L	ctC	ctT	211	212	AY.25	0.001269
ORF1ab/nsp8	103	L103L	ctC	ctA	1	212	AY.25	0.000006
ORF1ab/nsp8	103	L103L	ctC	ctA	197	200	AY.14	0.017338
ORF1ab/nsp8	103	L103L	ctC	ctT	3	200	AY.14	0.000264
ORF1ab/nsp8	103	L103L	ctC	ctT	182	182	B.1.1	0.003302
ORF1ab/nsp8	103	L103L	ctC	ctT	139	139	AY.42	0.005592
ORF1ab/nsp8	103	L103L	ctC	ctT	132	132	AY.9.1	0.011052
ORF1ab/nsp8	103	L103L	ctC	ctT	123	123	AZ.2.1	1
ORF1ab/nsp8	103	L103L	ctC	ctT	121	121	AY.103	0.000751
ORF1ab/nsp8	103	L103L	ctC	ctA	72	110	AY.102	0.001909
ORF1ab/nsp8	103	L103L	ctC	ctT	38	110	AY.102	0.001008
ORF1ab/nsp8	103	L103L	ctC	ctT	99	107	AY.44	0.000603
ORF1ab/nsp8	103	L103L	ctC	ctA	8	107	AY.44	0.000049
ORF1ab/nsp8	103	L103L	ctC	ctT	92	93	P.1	0.001449
ORF1ab/nsp8	103	L103L	ctC	ctA	1	93	P.1	0.000016
ORF1ab/nsp8	103	L103L	ctC	ctT	88	88	B.1.429	0.002071
ORF1ab/nsp8	103	L103L	ctC	ctT	83	83	AY.37	0.026233
ORF1ab/nsp8	103	L103L	ctC	ctT	80	80	B.1.1.153	0.087623
ORF1ab/nsp8	103	L103L	ctC	ctT	72	72	B.1.177	0.000948
ORF1ab/nsp8	103	L103I	Ctc	Atc	67	67	All	0.000013
ORF1ab/nsp8	103	L103L	ctC	ctT	60	60	AY.3	0.000597
ORF1ab/nsp8	103	L103L	ctC	ctA	31	59	AY.117	0.00262
ORF1ab/nsp8	103	L103L	ctC	ctT	28	59	AY.117	0.002366
ORF1ab/nsp8	103	L103L	ctC	ctT	59	59	AY.41	0.017343
ORF1ab/nsp8	103	L103L	ctC	ctT	58	58	AY.5	0.001198
ORF1ab/nsp8	103	L103L	ctC	ctT	48	48	B.1.36.1	0.054732
ORF1ab/nsp8	103	L103L	ctC	ctT	35	35	AY.69	0.006534
ORF1ab/nsp8	103	L103L	ctC	ctT	35	35	AY.90	0.023956
ORF1ab/nsp8	103	L103L	ctC	ctT	32	32	AY.119	0.00113
ORF1ab/nsp8	103	L103L	ctC	ctT	29	32	AY.47	0.000902
ORF1ab/nsp8	103	L103L	ctC	ctA	2	32	AY.47	0.000062
ORF1ab/nsp8	103	L103L	ctC	ctG	1	32	AY.47	0.000031
ORF1ab/nsp8	103	L103L	ctC	ctT	32	32	B.1.1.519	0.001271
ORF1ab/nsp8	103	L103L	ctC	ctT	32	32	B.1.234	0.004222
ORF1ab/nsp8	103	L103L	ctC	ctT	25	31	AY.39	0.000618
ORF1ab/nsp8	103	L103L	ctC	ctA	6	31	AY.39	0.000148
ORF1ab/nsp8	103	L103L	ctC	ctT	27	27	B.1.427	0.001363
ORF1ab/nsp8	103	L103L	ctC	ctT	26	26	AY.9.2	0.000955
ORF1ab/nsp8	103	L103L	ctC	ctT	25	25	B.1.637	0.001827
ORF1ab/nsp8	103	L103L	ctC	ctT	16	24	AY.120	0.000595
ORF1ab/nsp8	103	L103L	ctC	ctA	8	24	AY.120	0.000297
ORF1ab/nsp8	103	L103L	ctC	ctT	24	24	B.1.160	0.000749
ORF1ab/nsp8	103	L103L	ctC	ctT	24	24	B.1.36.17	0.011858
ORF1ab/nsp8	103	L103L	ctC	ctT	23	23	AY.4.2	0.000499
ORF1ab/nsp8	103	L103L	ctC	ctT	23	23	Q.8	0.003793
ORF1ab/nsp8	103	L103L	ctC	ctT	22	22	AY.98.1	0.001065
ORF1ab/nsp8	103	L103L	ctC	ctT	22	22	B.1.221	0.001563
ORF1ab/nsp8	103	L103L	ctC	ctT	22	22	B.6.4	1
ORF1ab/nsp8	103	L103L	ctC	ctT	21	21	AU.2	0.050847
ORF1ab/nsp8	103	L103L	ctC	ctT	20	21	AY.26	0.000566
ORF1ab/nsp8	103	L103L	ctC	ctA	1	21	AY.26	0.000028
ORF1ab/nsp8	103	L103L	ctC	ctT	20	21	B.1.351	0.000595
ORF1ab/nsp8	103	L103L	ctC	ctA	1	21	B.1.351	0.00003
ORF1ab/nsp8	103	L103L	ctC	ctT	20	20	B.1.177.4	0.004221
ORF1ab/nsp8	103	L103L	ctC	ctT	13	20	P.1.15	0.00302
ORF1ab/nsp8	103	L103L	ctC	ctA	4	20	P.1.15	0.000929
ORF1ab/nsp8	103	L103L	ctC	ctG	3	20	P.1.15	0.000697
ORF1ab/nsp8	103	L103F	Ctc	Ttc	19	19	All	0.000004
ORF1ab/nsp8	103	L103L	ctC	ctT	19	19	B.1.258	0.001264
ORF1ab/nsp8	103	L103L	ctC	ctT	17	18	AY.45	0.002069
ORF1ab/nsp8	103	L103L	ctC	ctA	1	18	AY.45	0.000122
ORF1ab/nsp8	103	L103L	ctC	ctT	17	18	B.1.1.318	0.00513
ORF1ab/nsp8	103	L103L	ctC	ctA	1	18	B.1.1.318	0.000302
ORF1ab/nsp8	103	L103L	ctC	ctT	18	18	B.1.525	0.002037
ORF1ab/nsp8	103	L103I	Ctc	Atc	18	18	B.1.526	0.000423
ORF1ab/nsp8	103	L103L	ctC	ctT	18	18	P.1.10	0.00485
ORF1ab/nsp8	103	L103L	ctC	ctT	17	17	AY.61	0.001781
ORF1ab/nsp8	103	L103L	ctC	ctT	17	17	Q.1	0.002148
ORF1ab/nsp8	103	L103L	ctC	ctT	16	16	AY.121	0.002165
ORF1ab/nsp8	103	L103L	ctC	ctT	15	16	B.1.243	0.001044
ORF1ab/nsp8	103	L103L	ctC	ctA	1	16	B.1.243	0.00007
ORF1ab/nsp8	103	L103L	ctC	ctT	15	16	B.1.596	0.001307
ORF1ab/nsp8	103	L103L	ctC	ctA	1	16	B.1.596	0.000087
ORF1ab/nsp8	103	L103L	ctC	ctT	15	15	AY.78	0.023112
ORF1ab/nsp8	103	L103L	ctC	ctT	15	15	B.1.1.214	0.000832
ORF1ab/nsp8	103	L103L	ctC	ctT	15	15	P.1.1	0.004765
ORF1ab/nsp8	103	L103L	ctC	ctT	14	14	B.1.369	0.003993
ORF1ab/nsp8	103	L103L	ctC	ctT	14	14	B.1.621	0.001239
ORF1ab/nsp8	103	L103L	ctC	ctT	14	14	P.1.14	0.000669
ORF1ab/nsp8	103	L103L	ctC	ctT	13	13	B.1.400	0.005577
ORF1ab/nsp8	103	L103L	ctC	ctT	13	13	B.1.526	0.000306
ORF1ab/nsp8	103	L103del	CTC	---	12	12	All	0.000002
ORF1ab/nsp8	103	L103L	ctC	ctT	12	12	AY.100	0.000552
ORF1ab/nsp8	103	L103L	ctC	ctT	12	12	AY.29	0.000189
ORF1ab/nsp8	103	L103L	ctC	ctT	12	12	AY.33	0.000801
ORF1ab/nsp8	103	L103I	Ctc	Atc	12	12	AY.46.6	0.000866
ORF1ab/nsp8	103	L103L	ctC	ctT	12	12	B.1.575	0.003641
ORF1ab/nsp8	103	L103L	ctC	ctT	11	11	AY.120.1	0.003531
ORF1ab/nsp8	103	L103L	ctC	ctT	11	11	AY.20	0.000428
ORF1ab/nsp8	103	L103L	ctC	ctT	10	10	AY.106	0.003349
ORF1ab/nsp8	103	L103L	ctC	ctT	10	10	AY.24	0.00431
ORF1ab/nsp8	103	L103L	ctC	ctT	10	10	B.1.617.1	0.00129
ORF1ab/nsp8	103	L103L	ctC	ctT	10	10	B.1.621.1	0.005058
ORF1ab/nsp8	103	L103L	ctC	ctT	10	10	C.37	0.001161
ORF1ab/nsp8	103	L103L	ctC	ctT	7	9	AY.110	0.000789
ORF1ab/nsp8	103	L103L	ctC	ctA	2	9	AY.110	0.000225
ORF1ab/nsp8	103	L103L	ctC	ctT	9	9	AY.23	0.000628
ORF1ab/nsp8	103	L103L	ctC	ctT	9	9	AY.75	0.000504
ORF1ab/nsp8	103	L103L	ctC	ctT	8	9	B	0.001022
ORF1ab/nsp8	103	L103L	ctC	ctA	1	9	B	0.000128
ORF1ab/nsp8	103	L103L	ctC	ctT	9	9	B.1.1.306	0.003946
ORF1ab/nsp8	103	L103P	cTc	cCc	8	8	All	0.000002
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	AY.46	0.000833
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	AY.46.6	0.000578
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	AY.75.1	0.001442
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	AY.98	0.000632
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	B.1.1.406	0.051948
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	B.1.456	0.026144
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	P.1.7	0.002554
ORF1ab/nsp8	103	L103L	ctC	ctT	8	8	P.2	0.001493
ORF1ab/nsp8	103	L103L	ctC	ctA	6	7	AY.107	0.002796
ORF1ab/nsp8	103	L103L	ctC	ctT	1	7	AY.107	0.000466
ORF1ab/nsp8	103	L103L	ctC	ctT	7	7	AY.39.1	0.000277
ORF1ab/nsp8	103	L103L	ctC	ctT	7	7	B.1.1.28	0.002179
ORF1ab/nsp8	103	L103L	ctC	ctT	6	7	B.1.177.81	0.001136
ORF1ab/nsp8	103	L103L	ctC	ctA	1	7	B.1.177.81	0.000189
ORF1ab/nsp8	103	L103L	ctC	ctT	7	7	B.1.258.17	0.000728
ORF1ab/nsp8	103	L103L	ctC	ctT	7	7	B.1.617.3	0.020896
ORF1ab/nsp8	103	L103L	ctC	ctT	4	6	AY.54	0.000381
ORF1ab/nsp8	103	L103L	ctC	ctA	2	6	AY.54	0.000191
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	AY.57	0.003937
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	AY.86	0.004979
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.1.284	0.000644
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.1.416	0.00543
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.1.75	0.06383
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.177.73	0.003398
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.308	0.206897
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.324	0.009631
ORF1ab/nsp8	103	L103L	ctC	ctT	6	6	B.1.351.3	0.005259
ORF1ab/nsp8	103	L103del1	cTc	c-c	2	5	All	0
ORF1ab/nsp8	103	L103del1	ctC	ct-	2	5	All	0
ORF1ab/nsp8	103	L103del1	cTC	cC-	1	5	All	0
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	AY.12	0.00158
ORF1ab/nsp8	103	L103L	ctC	ctT	4	5	AY.13	0.000644
ORF1ab/nsp8	103	L103L	ctC	ctA	1	5	AY.13	0.000161
ORF1ab/nsp8	103	L103L	ctC	ctT	4	5	AY.3.1	0.000341
ORF1ab/nsp8	103	L103L	ctC	ctA	1	5	AY.3.1	0.000085
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	AY.34.1	0.00255
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	AY.4.4	0.002046
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	AY.6	0.000206
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	AY.68	0.001369
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	AY.88	0.004421
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.147	0.003779
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.177.85	0.027174
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.177.86	0.000917
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.311	0.001373
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.36.10	0.023923
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.36.29	0.002587
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.36.8	0.005
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.433	0.015974
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	B.1.620	0.00473
ORF1ab/nsp8	103	L103L	ctC	ctT	5	5	P.1.17	0.000809
ORF1ab/nsp8	103	L103H	cTc	cAc	4	4	All	0.000001
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	AY.111	0.000733
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	AY.38	0.001997
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	AY.4.2.1	0.000596
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	AY.56	0.006421
ORF1ab/nsp8	103	L103L	ctC	ctT	2	4	AY.63	0.000774
ORF1ab/nsp8	103	L103L	ctC	ctA	2	4	AY.63	0.000774
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	AY.84	0.00175
ORF1ab/nsp8	103	L103I	Ctc	Atc	4	4	B.1	0.000037
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.1.110	0.363636
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.1.302	0.008299
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.1.351	0.011173
ORF1ab/nsp8	103	L103I	Ctc	Atc	4	4	B.1.1.7	0.000004
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.177.35	0.002764
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.177.56	0.00267
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.177.60	0.000874
ORF1ab/nsp8	103	L103L	ctC	ctT	3	4	B.1.396	0.002117
ORF1ab/nsp8	103	L103L	ctC	ctA	1	4	B.1.396	0.000706
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.499	0.004202
ORF1ab/nsp8	103	L103L	ctC	ctT	4	4	B.1.609	0.001918
ORF1ab/nsp8	103	L103I	Ctc	Atc	4	4	B.1.617.2	0.000015
ORF1ab/nsp8	103	L103L	ctC	ctT	3	4	R.1	0.00027
ORF1ab/nsp8	103	L103L	ctC	ctG	1	4	R.1	0.00009
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AA.1	0.021739
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.108	0.003308
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.116	0.00086
ORF1ab/nsp8	103	L103I	Ctc	Atc	3	3	AY.14	0.000264
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.21	0.005693
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.34	0.000291
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.35	0.000699
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.36	0.000445
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.46.4	0.000494
ORF1ab/nsp8	103	L103L	ctC	ctT	2	3	AY.52	0.001629
ORF1ab/nsp8	103	L103L	ctC	ctA	1	3	AY.52	0.000814
ORF1ab/nsp8	103	L103L	ctC	ctT	2	3	AY.71	0.00095
ORF1ab/nsp8	103	L103L	ctC	ctA	1	3	AY.71	0.000475
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.74	0.000347
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.82	0.004071
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	AY.87	0.002498
ORF1ab/nsp8	103	L103F	Ctc	Ttc	3	3	B.1	0.000027
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.1.174	0.010135
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.1.198	0.004405
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.1.222	0.000612
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.1.33	0.001263
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.1.39	0.001529
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.1.398	0.009677
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.177.7	0.000495
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.177.82	0.001432
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.199	0.012397
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.258.22	0.008
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.313	0.019737
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.326	0.022727
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.36.33	0.022727
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.36.38	0.004926
ORF1ab/nsp8	103	L103I	Ctc	Atc	3	3	B.1.429	0.000071
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.466.2	0.001174
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.471	0.008197
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.1.93	0.002801
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	B.40	0.001093
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	D.2	0.000225
ORF1ab/nsp8	103	L103L	ctC	ctT	3	3	P.5	0.041096
ORF1ab/nsp8	103	L103I	Ctc	Atc	2	2		0.111111
ORF1ab/nsp8	103	L103R	CTC	AGA	1	2	All	0
ORF1ab/nsp8	103	L103R	cTc	cGc	1	2	All	0
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	AY.1	0.000791
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	AY.115	0.010417
ORF1ab/nsp8	103	L103del	CTC	---	2	2	AY.25	0.000012
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	AY.27	0.000129
ORF1ab/nsp8	103	L103I	Ctc	Atc	2	2	AY.3	0.00002
ORF1ab/nsp8	103	L103I	Ctc	Atc	2	2	AY.4	0.000003
ORF1ab/nsp8	103	L103F	Ctc	Ttc	2	2	AY.43	0.000009
ORF1ab/nsp8	103	L103L	ctC	ctA	1	2	AY.62	0.000436
ORF1ab/nsp8	103	L103L	ctC	ctT	1	2	AY.62	0.000436
ORF1ab/nsp8	103	L103I	Ctc	Atc	2	2	AY.95	0.001522
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.1	0.000653
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.176	0.000879
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.243	0.008163
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.249	0.142857
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.294	0.002532
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.311	0.000716
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.521	0.010695
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.58	0.010753
ORF1ab/nsp8	103	L103P	cTc	cCc	2	2	B.1.1.7	0.000002
ORF1ab/nsp8	103	L103F	Ctc	Ttc	2	2	B.1.1.7	0.000002
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.1.99	0.047619
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.111	0.00235
ORF1ab/nsp8	103	L103del	CTC	---	2	2	B.1.177	0.000026
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.177.41	0.005
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.177.42	0.001789
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.239	0.002442
ORF1ab/nsp8	103	L103I	Ctc	Atc	2	2	B.1.265	0.002541
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.320	0.002491
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.346	0.002621
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.356	0.003454
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.36.22	0.002415
ORF1ab/nsp8	103	L103L	ctC	ctA	1	2	B.1.375	0.00082
ORF1ab/nsp8	103	L103L	ctC	ctT	1	2	B.1.375	0.00082
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.411	0.007407
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.469	0.00722
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.509	0.001732
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.524	0.002813
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.564	0.000852
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.597	0.009259
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	B.1.600	0.011696
ORF1ab/nsp8	103	L103del	CTC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp8	103	L103F	Ctc	Ttc	2	2	B.1.617.2	0.000008
ORF1ab/nsp8	103	L103L	ctC	ctT	1	2	B.6	0.00091
ORF1ab/nsp8	103	L103L	ctC	ctA	1	2	B.6	0.00091
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	C.35	0.001548
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	Q.3	0.00029
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	Q.4	0.00091
ORF1ab/nsp8	103	L103L	ctC	ctT	2	2	Q.6	0.013245
ORF1ab/nsp8	103	L103H	cTc	cAc	1	1		0.055556
ORF1ab/nsp8	103	L103N	CTc	AAc	1	1		0.055556
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1		0.055556
ORF1ab/nsp8	103	L103L	ctC	ctA	1	1	A	0.000387
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	A.1	0.000282
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	A.2.5	0.000499
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	A.23	0.010526
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	A.27	0.001656
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	AD.2	0.000219
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AE.8	0.000489
ORF1ab/nsp8	103	L103N	CTc	AAc	1	1	All	0
ORF1ab/nsp8	103	L103Q	cTC	cAA	1	1	All	0
ORF1ab/nsp8	103	L103V	Ctc	Gtc	1	1	All	0
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AT.1	0.005128
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.101	0.00049
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	AY.102	0.000027
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.105	0.000643
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.113	0.000142
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.114	0.000231
ORF1ab/nsp8	103	L103del	CTC	---	1	1	AY.120	0.000037
ORF1ab/nsp8	103	L103del1	cTC	cC-	1	1	AY.120.1	0.000321
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.120.2	0.001285
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.23.1	0.000417
ORF1ab/nsp8	103	L103R	CTC	AGA	1	1	AY.24	0.000431
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	AY.39	0.000025
ORF1ab/nsp8	103	L103P	cTc	cCc	1	1	AY.4	0.000002
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	AY.4	0.000002
ORF1ab/nsp8	103	L103R	cTc	cGc	1	1	AY.4	0.000002
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.4.5	0.000107
ORF1ab/nsp8	103	L103del	CTC	---	1	1	AY.44	0.000006
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	AY.45	0.000122
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	AY.46	0.000104
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.46.1	0.001027
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.46.3	0.000934
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.46.5	0.000198
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.5.4	0.000277
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.55	0.000917
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.58	0.000907
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.59	0.00053
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.65	0.000533
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.7.1	0.000113
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.72	0.001361
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.73	0.000665
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	AY.76	0.004831
ORF1ab/nsp8	103	L103del	CTC	---	1	1	AY.8	0.000606
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.85	0.000427
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.9.2.1	0.001976
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.91	0.00073
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.92	0.000287
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	AY.96	0.002075
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	AY.99.2	0.000092
ORF1ab/nsp8	103	L103H	cTc	cAc	1	1	B	0.000128
ORF1ab/nsp8	103	L103del1	ctC	ct-	1	1	B.1	0.000009
ORF1ab/nsp8	103	L103P	cTc	cCc	1	1	B.1.1	0.000018
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.128	0.007092
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.13	0.035714
ORF1ab/nsp8	103	L103del	CTC	---	1	1	B.1.1.153	0.001095
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.170	0.001247
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.280	0.003086
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.315	0.008475
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.317	0.000412
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.343	0.020833
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.348	0.000796
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.369	0.000446
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	B.1.1.37	0.000193
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.37	0.000193
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.371	0.010417
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.372	0.000689
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	B.1.1.385	0.004464
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.397	0.002252
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.419	0.007407
ORF1ab/nsp8	103	L103L	ctC	ctA	1	1	B.1.1.437	0.010417
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	B.1.1.44	0.00241
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.46	0.004367
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.464	0.001473
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.5	0.008333
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.50	0.000679
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.523	0.001563
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.524	0.020833
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.62	0.027027
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.1.70	0.000341
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.139	0.000733
ORF1ab/nsp8	103	L103H	cTc	cAc	1	1	B.1.14	0.017544
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.160.16	0.000929
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.160.17	0.001701
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.160.29	0.004219
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.160.8	0.001289
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	B.1.177	0.000013
ORF1ab/nsp8	103	L103P	cTc	cCc	1	1	B.1.177	0.000013
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.12	0.000152
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.15	0.000631
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.33	0.001645
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.48	0.003125
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.65	0.000665
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.75	0.001041
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.76	0.002494
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.8	0.000752
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.177.80	0.001912
ORF1ab/nsp8	103	L103del	CTC	---	1	1	B.1.2	0.000009
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	B.1.214	0.003663
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.221.3	0.000833
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.238	0.014925
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.240	0.000216
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.258.2	0.004505
ORF1ab/nsp8	103	L103P	cTc	cCc	1	1	B.1.260	0.003344
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.274	0.011905
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.298	0.002114
ORF1ab/nsp8	103	L103L	ctC	ctA	1	1	B.1.301	0.005917
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.323	0.020833
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.332	0.003497
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.349	0.000715
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.351.2	0.000303
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.36.31	0.001751
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.36.36	0.000602
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.36.37	0.002778
ORF1ab/nsp8	103	L103H	cTc	cAc	1	1	B.1.361	0.001289
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	B.1.367	0.000792
ORF1ab/nsp8	103	L103L	ctC	ctA	1	1	B.1.367	0.000792
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.382	0.008929
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.39	0.003906
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.398	0.002976
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.399	0.001934
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.401	0.008197
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.404	0.001302
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.409	0.000781
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.428	0.00102
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.432	0.011236
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.438	0.006536
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.438.1	0.000107
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.439	0.005917
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.443	0.004673
ORF1ab/nsp8	103	L103del1	cTc	c-c	1	1	B.1.468	0.005714
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.487	0.019608
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.497	0.000315
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	B.1.525	0.000113
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	B.1.526	0.000024
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.538	0.008065
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.540	0.009709
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.543	0.01
ORF1ab/nsp8	103	L103P	cTc	cCc	1	1	B.1.544	0.006024
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.556	0.007519
ORF1ab/nsp8	103	L103Q	cTC	cAA	1	1	B.1.561	0.000397
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.567	0.003333
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.568	0.001111
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.576	0.000907
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.589	0.007576
ORF1ab/nsp8	103	L103del1	ctC	ct-	1	1	B.1.617.1	0.000129
ORF1ab/nsp8	103	L103del1	cTc	c-c	1	1	B.1.617.2	0.000004
ORF1ab/nsp8	103	L103P	cTc	cCc	1	1	B.1.617.2	0.000004
ORF1ab/nsp8	103	L103V	Ctc	Gtc	1	1	B.1.617.2	0.000004
ORF1ab/nsp8	103	L103I	Ctc	Atc	1	1	B.1.621	0.000089
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.623	0.000536
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.1.632	0.006711
ORF1ab/nsp8	103	L103F	Ctc	Ttc	1	1	B.1.88.1	0.004808
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.31	0.003731
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.35	0.007812
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	B.39	0.002331
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	C.14	0.004329
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	C.8	0.004464
ORF1ab/nsp8	103	L103del	CTC	---	1	1	N.4	0.004255
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	N.4	0.004255
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	N.5	0.001767
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	P.1.13	0.000898
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	P.1.16	0.000374
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	P.1.6	0.001946
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	P.3	0.001595
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	W.1	0.008696
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	Y.1	0.012821
ORF1ab/nsp8	103	L103L	ctC	ctT	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.