CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp8 | 103 | L103L | L4045L | syn | ctC | ctT | 13305 | 12402 | 0.932131 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103L | L4045L | syn | ctC | ctA | 13305 | 878 | 0.0659902 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103L | L4045L | syn | ctC | ctG | 13305 | 24 | 0.00180383 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103L | L4045L | syn | CtC | TtA | 13305 | 1 | 0.0000751597 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103I | L4045I | nonsyn | Ctc | Atc | 67 | 67 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103F | L4045F | nonsyn | Ctc | Ttc | 19 | 19 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103del | L4045del | del | CTC | --- | 12 | 12 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103P | L4045P | nonsyn | cTc | cCc | 8 | 8 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103del1 | L4045del1 | del | cTc | c-c | 5 | 2 | 0.4 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103del1 | L4045del1 | del | ctC | ct- | 5 | 2 | 0.4 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103del1 | L4045del1 | del | cTC | cC- | 5 | 1 | 0.2 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103H | L4045H | nonsyn | cTc | cAc | 4 | 4 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103R | L4045R | nonsyn | cTc | cGc | 2 | 1 | 0.5 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103R | L4045R | nonsyn | CTC | AGA | 2 | 1 | 0.5 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103Q | L4045Q | nonsyn | cTC | cAA | 1 | 1 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103N | L4045N | nonsyn | CTc | AAc | 1 | 1 | 1 | 12398-12400 |
ORF1ab/nsp8 | 103 | L103V | L4045V | nonsyn | Ctc | Gtc | 1 | 1 | 1 | 12398-12400 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 12402 | 13305 | All | 0.002372 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 878 | 13305 | All | 0.000168 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 24 | 13305 | All | 0.000005 |
ORF1ab/nsp8 | 103 | L103L | CtC | TtA | 1 | 13305 | All | 0 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4480 | 4486 | B.1.1.7 | 0.004011 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 5 | 4486 | B.1.1.7 | 0.000004 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 1 | 4486 | B.1.1.7 | 0.000001 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1205 | 1205 | AZ.2 | 0.989327 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 499 | 848 | B.1.617.2 | 0.001879 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 347 | 848 | B.1.617.2 | 0.001307 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 1 | 848 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 103 | L103L | CtC | TtA | 1 | 848 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 747 | 766 | AY.4 | 0.001163 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 17 | 766 | AY.4 | 0.000026 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 2 | 766 | AY.4 | 0.000003 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 677 | 679 | AY.43 | 0.002999 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 2 | 679 | AY.43 | 0.000009 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 366 | 366 | B.1.36 | 0.053399 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 275 | 276 | B.1.2 | 0.002421 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 276 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 272 | 272 | AY.9 | 0.018386 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 272 | 272 | B.1.595 | 0.070981 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 236 | 236 | B.1.1.337 | 0.848921 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 213 | 220 | B.1 | 0.001951 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 7 | 220 | B.1 | 0.000064 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 211 | 212 | AY.25 | 0.001269 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 212 | AY.25 | 0.000006 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 197 | 200 | AY.14 | 0.017338 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 200 | AY.14 | 0.000264 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 182 | 182 | B.1.1 | 0.003302 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 139 | 139 | AY.42 | 0.005592 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 132 | 132 | AY.9.1 | 0.011052 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 123 | 123 | AZ.2.1 | 1 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 121 | 121 | AY.103 | 0.000751 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 72 | 110 | AY.102 | 0.001909 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 38 | 110 | AY.102 | 0.001008 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 99 | 107 | AY.44 | 0.000603 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 8 | 107 | AY.44 | 0.000049 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 92 | 93 | P.1 | 0.001449 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 93 | P.1 | 0.000016 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 88 | 88 | B.1.429 | 0.002071 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 83 | 83 | AY.37 | 0.026233 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 80 | 80 | B.1.1.153 | 0.087623 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 72 | 72 | B.1.177 | 0.000948 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 67 | 67 | All | 0.000013 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 60 | 60 | AY.3 | 0.000597 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 31 | 59 | AY.117 | 0.00262 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 28 | 59 | AY.117 | 0.002366 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 59 | 59 | AY.41 | 0.017343 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 58 | 58 | AY.5 | 0.001198 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 48 | 48 | B.1.36.1 | 0.054732 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 35 | 35 | AY.69 | 0.006534 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 35 | 35 | AY.90 | 0.023956 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 32 | 32 | AY.119 | 0.00113 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 29 | 32 | AY.47 | 0.000902 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 2 | 32 | AY.47 | 0.000062 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 1 | 32 | AY.47 | 0.000031 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 32 | 32 | B.1.1.519 | 0.001271 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 32 | 32 | B.1.234 | 0.004222 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 25 | 31 | AY.39 | 0.000618 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 6 | 31 | AY.39 | 0.000148 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 27 | 27 | B.1.427 | 0.001363 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 26 | 26 | AY.9.2 | 0.000955 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 25 | 25 | B.1.637 | 0.001827 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 16 | 24 | AY.120 | 0.000595 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 8 | 24 | AY.120 | 0.000297 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 24 | 24 | B.1.36.17 | 0.011858 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 23 | 23 | Q.8 | 0.003793 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 22 | 22 | AY.98.1 | 0.001065 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 22 | 22 | B.6.4 | 1 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 21 | 21 | AU.2 | 0.050847 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 20 | 21 | AY.26 | 0.000566 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 21 | AY.26 | 0.000028 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 20 | 21 | B.1.351 | 0.000595 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 21 | B.1.351 | 0.00003 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 20 | 20 | B.1.177.4 | 0.004221 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 13 | 20 | P.1.15 | 0.00302 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 4 | 20 | P.1.15 | 0.000929 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 3 | 20 | P.1.15 | 0.000697 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 19 | 19 | All | 0.000004 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 17 | 18 | AY.45 | 0.002069 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 18 | AY.45 | 0.000122 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 17 | 18 | B.1.1.318 | 0.00513 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 18 | B.1.1.318 | 0.000302 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 18 | 18 | B.1.525 | 0.002037 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 18 | 18 | P.1.10 | 0.00485 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 17 | 17 | Q.1 | 0.002148 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 16 | 16 | AY.121 | 0.002165 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 15 | 16 | B.1.243 | 0.001044 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 16 | B.1.243 | 0.00007 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 15 | 16 | B.1.596 | 0.001307 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 16 | B.1.596 | 0.000087 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 15 | 15 | AY.78 | 0.023112 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 15 | 15 | B.1.1.214 | 0.000832 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 15 | 15 | P.1.1 | 0.004765 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 14 | 14 | B.1.369 | 0.003993 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 14 | 14 | B.1.621 | 0.001239 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 13 | 13 | B.1.400 | 0.005577 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 12 | 12 | All | 0.000002 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 12 | 12 | AY.46.6 | 0.000866 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 12 | 12 | B.1.575 | 0.003641 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 11 | 11 | AY.120.1 | 0.003531 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 10 | 10 | AY.106 | 0.003349 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 10 | 10 | AY.24 | 0.00431 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 10 | 10 | B.1.621.1 | 0.005058 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 7 | 9 | AY.110 | 0.000789 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 2 | 9 | AY.110 | 0.000225 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 9 | B | 0.001022 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 9 | B | 0.000128 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 9 | 9 | B.1.1.306 | 0.003946 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 8 | 8 | All | 0.000002 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | B.1.1.406 | 0.051948 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | B.1.456 | 0.026144 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | P.1.7 | 0.002554 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 6 | 7 | AY.107 | 0.002796 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 7 | AY.107 | 0.000466 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 7 | B.1.177.81 | 0.001136 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 7 | B.1.177.81 | 0.000189 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 7 | 7 | B.1.617.3 | 0.020896 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 6 | AY.54 | 0.000381 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 2 | 6 | AY.54 | 0.000191 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | AY.57 | 0.003937 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | AY.86 | 0.004979 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.1.75 | 0.06383 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.308 | 0.206897 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.324 | 0.009631 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 6 | 6 | B.1.351.3 | 0.005259 |
ORF1ab/nsp8 | 103 | L103del1 | cTc | c-c | 2 | 5 | All | 0 |
ORF1ab/nsp8 | 103 | L103del1 | ctC | ct- | 2 | 5 | All | 0 |
ORF1ab/nsp8 | 103 | L103del1 | cTC | cC- | 1 | 5 | All | 0 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 5 | AY.13 | 0.000644 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 5 | AY.13 | 0.000161 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 5 | AY.3.1 | 0.000341 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 5 | AY.3.1 | 0.000085 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.147 | 0.003779 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.177.85 | 0.027174 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.36.10 | 0.023923 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.433 | 0.015974 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | B.1.620 | 0.00473 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp8 | 103 | L103H | cTc | cAc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | AY.56 | 0.006421 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 4 | AY.63 | 0.000774 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 2 | 4 | AY.63 | 0.000774 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.1.110 | 0.363636 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.1.302 | 0.008299 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.1.351 | 0.011173 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.177.35 | 0.002764 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.177.56 | 0.00267 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 4 | B.1.396 | 0.002117 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 4 | B.1.396 | 0.000706 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 4 | R.1 | 0.00027 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctG | 1 | 4 | R.1 | 0.00009 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AA.1 | 0.021739 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.21 | 0.005693 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 3 | AY.52 | 0.001629 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 3 | AY.52 | 0.000814 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 3 | AY.71 | 0.00095 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 3 | AY.71 | 0.000475 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.1.398 | 0.009677 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.199 | 0.012397 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.258.22 | 0.008 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.313 | 0.019737 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.326 | 0.022727 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.36.33 | 0.022727 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.471 | 0.008197 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.1.93 | 0.002801 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 3 | 3 | P.5 | 0.041096 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 2 | 2 | 0.111111 | |
ORF1ab/nsp8 | 103 | L103R | CTC | AGA | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 103 | L103R | cTc | cGc | 1 | 2 | All | 0 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | AY.115 | 0.010417 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 2 | AY.62 | 0.000436 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 2 | AY.62 | 0.000436 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.249 | 0.142857 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.58 | 0.010753 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.1.99 | 0.047619 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.177.41 | 0.005 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 2 | B.1.375 | 0.00082 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 2 | B.1.375 | 0.00082 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.411 | 0.007407 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 2 | B.6 | 0.00091 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 2 | B.6 | 0.00091 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 2 | 2 | Q.6 | 0.013245 |
ORF1ab/nsp8 | 103 | L103H | cTc | cAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp8 | 103 | L103N | CTc | AAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | 0.055556 | |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp8 | 103 | L103N | CTc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 103 | L103Q | cTC | cAA | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 103 | L103V | Ctc | Gtc | 1 | 1 | All | 0 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp8 | 103 | L103del1 | cTC | cC- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp8 | 103 | L103R | CTC | AGA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 103 | L103R | cTc | cGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp8 | 103 | L103H | cTc | cAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp8 | 103 | L103del1 | ctC | ct- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp8 | 103 | L103H | cTc | cAc | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.274 | 0.011905 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp8 | 103 | L103H | cTc | cAc | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp8 | 103 | L103del1 | cTc | c-c | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp8 | 103 | L103Q | cTC | cAA | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp8 | 103 | L103del1 | ctC | ct- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp8 | 103 | L103del1 | cTc | c-c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 103 | L103P | cTc | cCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 103 | L103V | Ctc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp8 | 103 | L103I | Ctc | Atc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp8 | 103 | L103F | Ctc | Ttc | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp8 | 103 | L103del | CTC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | Y.1 | 0.012821 |
ORF1ab/nsp8 | 103 | L103L | ctC | ctT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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