CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 10 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp810P10SP3952SnonsynCcaTca895689320.9973212119-12121

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp810P10SCcaTca89328956All0.001708
ORF1ab/nsp810P10SCcaTca50775094B.1.177.810.961189
ORF1ab/nsp810P10SCcaTca594594B.1.1.70.000532
ORF1ab/nsp810P10SCcaTca341341Z.10.985549
ORF1ab/nsp810P10SCcaTca323323AY.40.000503
ORF1ab/nsp810P10SCcaTca255255B.1.1770.003358
ORF1ab/nsp810P10SCcaTca229229B.1.1600.007142
ORF1ab/nsp810P10SCcaTca213213B.1.177.501
ORF1ab/nsp810P10SCcaTca177177B.10.001621
ORF1ab/nsp810P10SCcaTca169169B.1.2580.011246
ORF1ab/nsp810P10SCcaTca132132B.1.20.001162
ORF1ab/nsp810P10SCcaTca109109B.1.617.20.00041
ORF1ab/nsp810P10SCcaTca103103AY.420.004144
ORF1ab/nsp810P10SCcaTca9898B.1.1.3330.10549
ORF1ab/nsp810P10SCcaTca6060AY.30.000597
ORF1ab/nsp810P10SCcaTca5959AY.50.001218
ORF1ab/nsp810P10SCcaTca5757AY.1030.000354
ORF1ab/nsp810P10SCcaTca5757AY.430.000253
ORF1ab/nsp810P10SCcaTca5050AY.250.000301
ORF1ab/nsp810P10SCcaTca4242AY.440.000256
ORF1ab/nsp810P10SCcaTca4141AY.260.001161
ORF1ab/nsp810P10SCcaTca3939B.1.10.000707
ORF1ab/nsp810P10SCcaTca3434B.1.5610.013497
ORF1ab/nsp810P10SCcaTca3232B.1.5170.013664
ORF1ab/nsp810P10SCcaTca3232P.10.000504
ORF1ab/nsp810P10SCcaTca3131B.1.4290.000729
ORF1ab/nsp810P10SCcaTca2929B.1.1.3480.023089
ORF1ab/nsp810P10SCcaTca2626B.1.5960.002266
ORF1ab/nsp810P10SCcaTca2424B.1.2430.00167
ORF1ab/nsp810P10SCcaTca1919B.1.1.5190.000755
ORF1ab/nsp810P10SCcaTca1414AY.390.000346
ORF1ab/nsp810P10SCcaTca1414B.1.1260.017857
ORF1ab/nsp810P10SCcaTca1414B.1.177.600.003058
ORF1ab/nsp810P10SCcaTca1313AY.330.000868
ORF1ab/nsp810P10SCcaTca1313AY.750.000728
ORF1ab/nsp810P10SCcaTca1212B.1.36.290.006208
ORF1ab/nsp810P10SCcaTca1010AY.46.50.001984
ORF1ab/nsp810P10SCcaTca99AY.1170.000761
ORF1ab/nsp810P10SCcaTca99AY.4.20.000195
ORF1ab/nsp810P10SCcaTca88AD.20.001752
ORF1ab/nsp810P10SCcaTca88AY.290.000126
ORF1ab/nsp810P10SCcaTca88AY.870.006661
ORF1ab/nsp810P10SCcaTca88AY.90.000541
ORF1ab/nsp810P10SCcaTca88B.1.1.3620.044944
ORF1ab/nsp810P10SCcaTca88B.1.177.860.001468
ORF1ab/nsp810P10SCcaTca88B.1.2210.000568
ORF1ab/nsp810P10SCcaTca77AY.1000.000322
ORF1ab/nsp810P10SCcaTca77AY.1020.000186
ORF1ab/nsp810P10SCcaTca77AY.39.10.000277
ORF1ab/nsp810P10SCcaTca77B.1.5260.000165
ORF1ab/nsp810P10SCcaTca77C.370.000812
ORF1ab/nsp810P10SCcaTca360.166667
ORF1ab/nsp810P10SCcaTca66AY.200.000233
ORF1ab/nsp810P10SCcaTca66AY.540.000572
ORF1ab/nsp810P10SCcaTca66B.1.2400.001293
ORF1ab/nsp810P10SCcaTca66B.1.4270.000303
ORF1ab/nsp810P10SCcaTca55AY.116.10.001557
ORF1ab/nsp810P10SCcaTca55AY.590.002648
ORF1ab/nsp810P10SCcaTca55AY.9.20.000184
ORF1ab/nsp810P10SCcaTca55B.1.1.3160.004625
ORF1ab/nsp810P10SCcaTca55B.1.1.3730.119048
ORF1ab/nsp810P10SCcaTca55B.1.2370.024876
ORF1ab/nsp810P10SCcaTca55B.1.258.170.00052
ORF1ab/nsp810P10SCcaTca44A.2.50.001996
ORF1ab/nsp810P10SCcaTca44AY.1180.000251
ORF1ab/nsp810P10SCcaTca44AY.1190.000141
ORF1ab/nsp810P10SCcaTca44AY.450.000487
ORF1ab/nsp810P10SCcaTca44AY.610.000419
ORF1ab/nsp810P10SCcaTca44AY.99.20.000369
ORF1ab/nsp810P10SCcaTca44B0.000511
ORF1ab/nsp810P10SCcaTca44B.1.1.2220.000816
ORF1ab/nsp810P10SCcaTca44B.1.177.720.013559
ORF1ab/nsp810P10SCcaTca44B.1.360.000584
ORF1ab/nsp810P10SCcaTca44B.1.5250.000453
ORF1ab/nsp810P10SCcaTca44B.1.5970.018519
ORF1ab/nsp810P10SCcaTca44R.10.00036
ORF1ab/nsp810P10SCcaTca33AY.1200.000112
ORF1ab/nsp810P10SCcaTca33AY.470.000093
ORF1ab/nsp810P10SCcaTca33AY.850.001282
ORF1ab/nsp810P10SCcaTca33B.1.1.4320.003797
ORF1ab/nsp810P10SCcaTca33B.1.177.210.000229
ORF1ab/nsp810P10SCcaTca33B.1.177.730.001699
ORF1ab/nsp810P10SCcaTca33B.1.4710.008197
ORF1ab/nsp810P10SCcaTca33B.1.6280.001057
ORF1ab/nsp810P10SCcaTca22AU.20.004843
ORF1ab/nsp810P10SCcaTca22AY.240.000862
ORF1ab/nsp810P10SCcaTca22AY.34.10.00102
ORF1ab/nsp810P10SCcaTca22AY.660.002139
ORF1ab/nsp810P10SCcaTca22AY.98.10.000097
ORF1ab/nsp810P10SCcaTca22B.1.1.2690.002706
ORF1ab/nsp810P10SCcaTca22B.1.1.2840.000215
ORF1ab/nsp810P10SCcaTca22B.1.1.3120.003824
ORF1ab/nsp810P10SCcaTca22B.1.1.3170.000823
ORF1ab/nsp810P10SCcaTca22B.1.1.3180.000604
ORF1ab/nsp810P10SCcaTca22B.1.1.330.000842
ORF1ab/nsp810P10SCcaTca22B.1.1.340.026316
ORF1ab/nsp810P10SCcaTca22B.1.1.370.000386
ORF1ab/nsp810P10SCcaTca22B.1.1.390.001019
ORF1ab/nsp810P10SCcaTca22B.1.1.4860.003155
ORF1ab/nsp810P10SCcaTca22B.1.1.500.001358
ORF1ab/nsp810P10SCcaTca22B.1.177.320.002699
ORF1ab/nsp810P10SCcaTca22B.1.1890.008584
ORF1ab/nsp810P10SCcaTca22B.1.243.20.028986
ORF1ab/nsp810P10SCcaTca22B.1.2790.001027
ORF1ab/nsp810P10SCcaTca22B.1.2890.005319
ORF1ab/nsp810P10SCcaTca22B.1.3510.000059
ORF1ab/nsp810P10SCcaTca22B.1.36.160.002849
ORF1ab/nsp810P10SCcaTca22B.1.36.180.00084
ORF1ab/nsp810P10SCcaTca22B.1.428.30.025641
ORF1ab/nsp810P10SCcaTca22B.1.4970.00063
ORF1ab/nsp810P10SCcaTca22B.1.5240.002813
ORF1ab/nsp810P10SCcaTca22B.1.5490.014388
ORF1ab/nsp810P10SCcaTca22B.1.6180.008065
ORF1ab/nsp810P10SCcaTca22B.1.6210.000177
ORF1ab/nsp810P10SCcaTca22B.1.9.50.011364
ORF1ab/nsp810P10SCcaTca22P.1.140.000096
ORF1ab/nsp810P10SCcaTca22P.20.000373
ORF1ab/nsp810P10SCcaTca22Q.30.00029
ORF1ab/nsp810P10SCcaTca22Q.80.00033
ORF1ab/nsp810P10SCcaTca11A0.000387
ORF1ab/nsp810P10SCcaTca11A.10.000282
ORF1ab/nsp810P10SCcaTca11AE.10.011364
ORF1ab/nsp810P10SCcaTca11AY.1130.000142
ORF1ab/nsp810P10SCcaTca11AY.120.10.000321
ORF1ab/nsp810P10SCcaTca11AY.160.00038
ORF1ab/nsp810P10SCcaTca11AY.270.000065
ORF1ab/nsp810P10SCcaTca11AY.29.10.000221
ORF1ab/nsp810P10SCcaTca11AY.360.000148
ORF1ab/nsp810P10SCcaTca11AY.370.000316
ORF1ab/nsp810P10SCcaTca11AY.380.000499
ORF1ab/nsp810P10SCcaTca11AY.4.2.10.000149
ORF1ab/nsp810P10SCcaTca11AY.46.30.000934
ORF1ab/nsp810P10SCcaTca11AY.46.40.000165
ORF1ab/nsp810P10SCcaTca11AY.5.40.000277
ORF1ab/nsp810P10SCcaTca11AY.520.000814
ORF1ab/nsp810P10SCcaTca11AY.530.000288
ORF1ab/nsp810P10SCcaTca11AY.570.000656
ORF1ab/nsp810P10SCcaTca11AY.60.000041
ORF1ab/nsp810P10SCcaTca11AY.620.000436
ORF1ab/nsp810P10SCcaTca11AY.680.000274
ORF1ab/nsp810P10SCcaTca11AY.790.001211
ORF1ab/nsp810P10SCcaTca11AY.880.000884
ORF1ab/nsp810P10SCcaTca11AY.910.00073
ORF1ab/nsp810P10SCcaTca11AY.930.000273
ORF1ab/nsp810P10SCcaTca11AY.980.000079
ORF1ab/nsp810P10SCcaTca11B.1.1.100.001115
ORF1ab/nsp810P10SCcaTca11B.1.1.1320.014925
ORF1ab/nsp810P10SCcaTca11B.1.1.1410.002012
ORF1ab/nsp810P10SCcaTca11B.1.1.1630.007634
ORF1ab/nsp810P10SCcaTca11B.1.1.2140.000055
ORF1ab/nsp810P10SCcaTca11B.1.1.2160.00089
ORF1ab/nsp810P10SCcaTca11B.1.1.2170.003636
ORF1ab/nsp810P10SCcaTca11B.1.1.2270.004348
ORF1ab/nsp810P10SCcaTca11B.1.1.3060.000438
ORF1ab/nsp810P10SCcaTca11B.1.1.3690.000446
ORF1ab/nsp810P10SCcaTca11B.1.1.3720.000689
ORF1ab/nsp810P10SCcaTca11B.1.1.4090.002833
ORF1ab/nsp810P10SCcaTca11B.1.1.4120.007634
ORF1ab/nsp810P10SCcaTca11B.1.1.460.004367
ORF1ab/nsp810P10SCcaTca11B.1.1.700.000341
ORF1ab/nsp810P10SCcaTca11B.1.1110.001175
ORF1ab/nsp810P10SCcaTca11B.1.160.180.007299
ORF1ab/nsp810P10SCcaTca11B.1.160.330.004425
ORF1ab/nsp810P10SCcaTca11B.1.1640.014925
ORF1ab/nsp810P10SCcaTca11B.1.177.120.000152
ORF1ab/nsp810P10SCcaTca11B.1.177.40.000211
ORF1ab/nsp810P10SCcaTca11B.1.177.70.000165
ORF1ab/nsp810P10SCcaTca11B.1.177.750.001041
ORF1ab/nsp810P10SCcaTca11B.1.177.850.005435
ORF1ab/nsp810P10SCcaTca11B.1.220.001318
ORF1ab/nsp810P10SCcaTca11B.1.2230.002778
ORF1ab/nsp810P10SCcaTca11B.1.2340.000132
ORF1ab/nsp810P10SCcaTca11B.1.258.110.000396
ORF1ab/nsp810P10SCcaTca11B.1.3110.000275
ORF1ab/nsp810P10SCcaTca11B.1.3240.001605
ORF1ab/nsp810P10SCcaTca11B.1.3320.003497
ORF1ab/nsp810P10SCcaTca11B.1.36.310.001751
ORF1ab/nsp810P10SCcaTca11B.1.36.380.001642
ORF1ab/nsp810P10SCcaTca11B.1.36.80.001
ORF1ab/nsp810P10SCcaTca11B.1.3980.002976
ORF1ab/nsp810P10SCcaTca11B.1.4330.003195
ORF1ab/nsp810P10SCcaTca11B.1.4590.004082
ORF1ab/nsp810P10SCcaTca11B.1.5030.002488
ORF1ab/nsp810P10SCcaTca11B.1.5380.008065
ORF1ab/nsp810P10SCcaTca11B.1.5680.001111
ORF1ab/nsp810P10SCcaTca11B.1.5950.000261
ORF1ab/nsp810P10SCcaTca11B.1.621.10.000506
ORF1ab/nsp810P10SCcaTca11B.1.6250.002353
ORF1ab/nsp810P10SCcaTca11B.1.6370.000073
ORF1ab/nsp810P10SCcaTca11C.10.002392
ORF1ab/nsp810P10SCcaTca11C.140.004329
ORF1ab/nsp810P10SCcaTca11C.170.055556

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.