CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp8 : CodonNum = 1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp81A1AA3943AsyngcTgcC2772680.96750912092-12094
ORF1ab/nsp81A1AA3943AsyngcTgcG27750.018050512092-12094
ORF1ab/nsp81A1AA3943AsyngcTgcA27740.014440412092-12094
ORF1ab/nsp81A1SA3943SnonsynGctTct140140112092-12094
ORF1ab/nsp81A1VA3943VnonsyngCtgTt1414112092-12094
ORF1ab/nsp81A1DA3943DnonsyngCtgAt1111112092-12094
ORF1ab/nsp81A1del2A3943del2delgCTg--1190.81818212092-12094
ORF1ab/nsp81A1del2A3943del2delGCt--t1120.18181812092-12094
ORF1ab/nsp81A1delA3943deldelGCT---77112092-12094
ORF1ab/nsp81A1del1A3943del1delgcTgc-66112092-12094
ORF1ab/nsp81A1TA3943TnonsynGctAct66112092-12094
ORF1ab/nsp81A1GA3943GnonsyngCtgGt650.83333312092-12094
ORF1ab/nsp81A1GA3943GnonsyngCTgGG610.16666712092-12094
ORF1ab/nsp81A1HA3943HnonsynGCtCAt33112092-12094
ORF1ab/nsp81A1PA3943PnonsynGctCct33112092-12094
ORF1ab/nsp81A1RA3943RnonsynGCTAGA22112092-12094
ORF1ab/nsp81A1QA3943QnonsynGCTCAG22112092-12094
ORF1ab/nsp81A1NA3943NnonsynGCtAAt11112092-12094
ORF1ab/nsp81A1CA3943CnonsynGCTTGC11112092-12094

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp81A1AgcTgcC268277All0.000051
ORF1ab/nsp81A1AgcTgcG5277All0.000001
ORF1ab/nsp81A1AgcTgcA4277All0.000001
ORF1ab/nsp81A1SGctTct140140All0.000027
ORF1ab/nsp81A1AgcTgcC9191B.1.1.4370.947917
ORF1ab/nsp81A1SGctTct5252B.1.1.70.000047
ORF1ab/nsp81A1AgcTgcC2323AY.250.000138
ORF1ab/nsp81A1AgcTgcC2222Q.10.002779
ORF1ab/nsp81A1AgcTgcC2121B.1.1.70.000019
ORF1ab/nsp81A1SGctTct1919AY.290.0003
ORF1ab/nsp81A1AgcTgcC1616AY.50.00033
ORF1ab/nsp81A1VgCtgTt1414All0.000003
ORF1ab/nsp81A1AgcTgcC1213AY.40.000019
ORF1ab/nsp81A1AgcTgcA113AY.40.000002
ORF1ab/nsp81A1AgcTgcC1112AY.430.000049
ORF1ab/nsp81A1AgcTgcA112AY.430.000004
ORF1ab/nsp81A1DgCtgAt1111All0.000002
ORF1ab/nsp81A1del2gCTg--911All0.000002
ORF1ab/nsp81A1del2GCt--t211All0
ORF1ab/nsp81A1SGctTct1010B.1.20.000088
ORF1ab/nsp81A1SGctTct99AY.440.000055
ORF1ab/nsp81A1SGctTct99B.1.4290.000212
ORF1ab/nsp81A1AgcTgcC88AY.4.20.000174
ORF1ab/nsp81A1delGCT---77All0.000001
ORF1ab/nsp81A1AgcTgcC77AY.46.50.001389
ORF1ab/nsp81A1AgcTgcC77B.10.000064
ORF1ab/nsp81A1SGctTct77B.10.000064
ORF1ab/nsp81A1TGctAct66All0.000001
ORF1ab/nsp81A1del1gcTgc-66All0.000001
ORF1ab/nsp81A1GgCtgGt56All0.000001
ORF1ab/nsp81A1GgCTgGG16All0
ORF1ab/nsp81A1SGctTct55AY.1020.000133
ORF1ab/nsp81A1AgcTgcC55AY.230.000349
ORF1ab/nsp81A1AgcTgcC55B.1.617.20.000019
ORF1ab/nsp81A1DgCtgAt55P.10.000079
ORF1ab/nsp81A1HGCtCAt33All0.000001
ORF1ab/nsp81A1PGctCct33All0.000001
ORF1ab/nsp81A1del2gCTg--33AY.39.10.000119
ORF1ab/nsp81A1SGctTct33AY.40.000005
ORF1ab/nsp81A1SGctTct33AY.430.000013
ORF1ab/nsp81A1VgCtgTt33B.10.000027
ORF1ab/nsp81A1SGctTct33B.1.1770.00004
ORF1ab/nsp81A1AgcTgcC33B.1.20.000026
ORF1ab/nsp81A1AgcTgcG23B.1.4290.000047
ORF1ab/nsp81A1AgcTgcC13B.1.4290.000024
ORF1ab/nsp81A1delGCT---220.111111
ORF1ab/nsp81A1del2GCt--t220.111111
ORF1ab/nsp81A1HGCtCAt220.111111
ORF1ab/nsp81A1QGCTCAG220.111111
ORF1ab/nsp81A1GgCtgGt120.055556
ORF1ab/nsp81A1GgCTgGG120.055556
ORF1ab/nsp81A1RGCTAGA22All0
ORF1ab/nsp81A1QGCTCAG22All0
ORF1ab/nsp81A1AgcTgcC22AY.1020.000053
ORF1ab/nsp81A1AgcTgcG22AY.200.000078
ORF1ab/nsp81A1VgCtgTt22AY.250.000012
ORF1ab/nsp81A1SGctTct22AY.250.000012
ORF1ab/nsp81A1del2gCTg--22AY.300.000791
ORF1ab/nsp81A1AgcTgcC22AY.390.000049
ORF1ab/nsp81A1DgCtgAt22AY.40.000003
ORF1ab/nsp81A1del2gCTg--22AY.850.000854
ORF1ab/nsp81A1TGctAct22B.10.000018
ORF1ab/nsp81A1AgcTgcC22B.1.10.000036
ORF1ab/nsp81A1SGctTct22B.1.1.2690.002706
ORF1ab/nsp81A1VgCtgTt22B.1.1.70.000002
ORF1ab/nsp81A1delGCT---22B.1.1.70.000002
ORF1ab/nsp81A1GgCtgGt22B.1.1.70.000002
ORF1ab/nsp81A1TGctAct22B.1.1.70.000002
ORF1ab/nsp81A1VgCtgTt22D.20.00015
ORF1ab/nsp81A1SGctTct22Q.80.00033
ORF1ab/nsp81A1AgcTgcC22V.20.064516
ORF1ab/nsp81A1AgcTgcG110.055556
ORF1ab/nsp81A1TGctAct110.055556
ORF1ab/nsp81A1NGCtAAt11All0
ORF1ab/nsp81A1CGCTTGC11All0
ORF1ab/nsp81A1SGctTct11AY.1000.000046
ORF1ab/nsp81A1del2gCTg--11AY.1030.000006
ORF1ab/nsp81A1AgcTgcA11AY.1030.000006
ORF1ab/nsp81A1SGctTct11AY.1030.000006
ORF1ab/nsp81A1AgcTgcC11AY.1100.000113
ORF1ab/nsp81A1SGctTct11AY.1190.000035
ORF1ab/nsp81A1AgcTgcC11AY.1190.000035
ORF1ab/nsp81A1del1gcTgc-11AY.250.000006
ORF1ab/nsp81A1AgcTgcC11AY.290.000016
ORF1ab/nsp81A1delGCT---11AY.30.00001
ORF1ab/nsp81A1AgcTgcC11AY.360.000148
ORF1ab/nsp81A1del1gcTgc-11AY.40.000002
ORF1ab/nsp81A1SGctTct11AY.4.40.000409
ORF1ab/nsp81A1DgCtgAt11AY.4.50.000107
ORF1ab/nsp81A1AgcTgcC11AY.420.00004
ORF1ab/nsp81A1AgcTgcC11AY.440.000006
ORF1ab/nsp81A1HGCtCAt11AY.440.000006
ORF1ab/nsp81A1SGctTct11AY.470.000031
ORF1ab/nsp81A1AgcTgcC11AY.650.000533
ORF1ab/nsp81A1AgcTgcC11AY.730.000665
ORF1ab/nsp81A1AgcTgcC11AY.750.000056
ORF1ab/nsp81A1del2gCTg--11AY.790.001211
ORF1ab/nsp81A1GgCtgGt11AY.9.20.000037
ORF1ab/nsp81A1AgcTgcA11AY.990.001049
ORF1ab/nsp81A1AgcTgcC11B0.000128
ORF1ab/nsp81A1PGctCct11B.10.000009
ORF1ab/nsp81A1del1gcTgc-11B.10.000009
ORF1ab/nsp81A1delGCT---11B.10.000009
ORF1ab/nsp81A1CGCTTGC11B.1.10.000018
ORF1ab/nsp81A1SGctTct11B.1.10.000018
ORF1ab/nsp81A1AgcTgcC11B.1.1.3110.000358
ORF1ab/nsp81A1PGctCct11B.1.1.330.000421
ORF1ab/nsp81A1VgCtgTt11B.1.1.5190.00004
ORF1ab/nsp81A1del1gcTgc-11B.1.1.70.000001
ORF1ab/nsp81A1AgcTgcC11B.1.1.80.003584
ORF1ab/nsp81A1VgCtgTt11B.1.1600.000031
ORF1ab/nsp81A1AgcTgcC11B.1.1770.000013
ORF1ab/nsp81A1SGctTct11B.1.177.510.004566
ORF1ab/nsp81A1VgCtgTt11B.1.20.000009
ORF1ab/nsp81A1PGctCct11B.1.20.000009
ORF1ab/nsp81A1SGctTct11B.1.2060.000816
ORF1ab/nsp81A1AgcTgcC11B.1.2210.000071
ORF1ab/nsp81A1SGctTct11B.1.2600.003344
ORF1ab/nsp81A1DgCtgAt11B.1.3510.00003
ORF1ab/nsp81A1AgcTgcC11B.1.36.70.004
ORF1ab/nsp81A1AgcTgcC11B.1.3690.000285
ORF1ab/nsp81A1AgcTgcC11B.1.3710.001122
ORF1ab/nsp81A1AgcTgcC11B.1.4530.003236
ORF1ab/nsp81A1VgCtgTt11B.1.5800.004065
ORF1ab/nsp81A1SGctTct11B.1.5960.000087
ORF1ab/nsp81A1AgcTgcC11B.1.5960.000087
ORF1ab/nsp81A1AgcTgcC11B.1.6090.000479
ORF1ab/nsp81A1GgCtgGt11B.1.617.10.000129
ORF1ab/nsp81A1AgcTgcC11B.1.617.10.000129
ORF1ab/nsp81A1RGCTAGA11B.1.617.20.000004
ORF1ab/nsp81A1del1gcTgc-11B.1.617.20.000004
ORF1ab/nsp81A1TGctAct11B.1.617.20.000004
ORF1ab/nsp81A1AgcTgcC11B.1.6210.000089
ORF1ab/nsp81A1SGctTct11B.1.6280.000352
ORF1ab/nsp81A1AgcTgcC11B.1.6370.000073
ORF1ab/nsp81A1AgcTgcC11B.6.60.000889
ORF1ab/nsp81A1RGCTAGA11C.170.055556
ORF1ab/nsp81A1del1gcTgc-11C.36.30.000567
ORF1ab/nsp81A1SGctTct11C.370.000116
ORF1ab/nsp81A1SGctTct11D.20.000075
ORF1ab/nsp81A1AgcTgcC11D.20.000075
ORF1ab/nsp81A1delGCT---11N.40.004255
ORF1ab/nsp81A1AgcTgcC11N.50.001767
ORF1ab/nsp81A1NGCtAAt11P.10.000016
ORF1ab/nsp81A1VgCtgTt11P.10.000016
ORF1ab/nsp81A1AgcTgcC11P.10.000016
ORF1ab/nsp81A1SGctTct11P.1.140.000048
ORF1ab/nsp81A1DgCtgAt11P.1.150.000232
ORF1ab/nsp81A1AgcTgcC11P.20.000187
ORF1ab/nsp81A1DgCtgAt11P.20.000187