CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp7 | 26 | S26F | S3885F | nonsyn | tCt | tTt | 4789 | 4789 | 1 | 11918-11920 |
Details of the mutation S26F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 4789 | 4789 | All | 0.000916 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1580 | 1580 | AY.44 | 0.009617 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 963 | 963 | B.1.617.2 | 0.003626 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 818 | 818 | B.1.2 | 0.007203 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 184 | 184 | AY.4 | 0.000286 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 133 | 133 | B.1.1 | 0.002413 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 126 | 126 | AY.43 | 0.000558 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 81 | 81 | B.1.264 | 1 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 54 | 54 | B.1.177 | 0.000711 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 51 | 51 | AY.25 | 0.000307 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 45 | 45 | AY.42 | 0.00181 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 42 | 42 | B.1.621 | 0.003718 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 38 | 38 | B.1.575 | 0.011529 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 37 | 37 | AY.3 | 0.000368 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 25 | 25 | B.1.429 | 0.000588 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 24 | 24 | B.1.356 | 0.041451 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 21 | 21 | B.1.264.1 | 1 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 21 | 21 | B.1.609 | 0.010067 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 17 | 17 | AY.98 | 0.001343 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 15 | 15 | B.1.1.214 | 0.000832 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 15 | 15 | B.1.234 | 0.001979 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 13 | 13 | B.1.36.16 | 0.018519 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 10 | 10 | B.1.177.44 | 0.005189 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 8 | 8 | B.1.1.37 | 0.001543 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 8 | 8 | B.1.416 | 0.010152 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 7 | 7 | C.35 | 0.005418 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | B.1.116 | 0.069767 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | B.1.632 | 0.040268 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 5 | 5 | B.1.1.241 | 0.010352 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 5 | 5 | B.1.270 | 0.02809 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 4 | 4 | B.1.1.288 | 0.007663 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 4 | 4 | B.1.258.22 | 0.010667 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.1.141 | 0.006036 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.214.1 | 0.04 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.441 | 0.019231 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.339 | 0.010526 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp7 | 26 | S26F | tCt | tTt | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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