CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = S25S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp725S25SS3884SsyntcAtcG3142650.84394911915-11917
ORF1ab/nsp725S25SS3884SsyntcAtcC314440.14012711915-11917
ORF1ab/nsp725S25SS3884SsyntcAtcT31450.015923611915-11917

Details of the mutation S25S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp725S25StcAtcG265314All0.000051
ORF1ab/nsp725S25StcAtcC44314All0.000008
ORF1ab/nsp725S25StcAtcT5314All0.000001
ORF1ab/nsp725S25StcAtcG4848B.1.1.2140.002662
ORF1ab/nsp725S25StcAtcG3234AY.40.00005
ORF1ab/nsp725S25StcAtcC134AY.40.000002
ORF1ab/nsp725S25StcAtcT134AY.40.000002
ORF1ab/nsp725S25StcAtcG3234B.1.1.70.000029
ORF1ab/nsp725S25StcAtcC234B.1.1.70.000002
ORF1ab/nsp725S25StcAtcC3232AY.290.000505
ORF1ab/nsp725S25StcAtcG1416B.1.617.20.000053
ORF1ab/nsp725S25StcAtcC216B.1.617.20.000008
ORF1ab/nsp725S25StcAtcG1313AY.1210.001759
ORF1ab/nsp725S25StcAtcG99AY.1030.000056
ORF1ab/nsp725S25StcAtcG99B.1.4290.000212
ORF1ab/nsp725S25StcAtcG88AY.430.000035
ORF1ab/nsp725S25StcAtcG77B.1.1.3180.002112
ORF1ab/nsp725S25StcAtcC36AY.250.000018
ORF1ab/nsp725S25StcAtcG36AY.250.000018
ORF1ab/nsp725S25StcAtcG56AY.30.00005
ORF1ab/nsp725S25StcAtcC16AY.30.00001
ORF1ab/nsp725S25StcAtcG66AY.9.10.000502
ORF1ab/nsp725S25StcAtcG55AY.1190.000177
ORF1ab/nsp725S25StcAtcG55AY.80.00303
ORF1ab/nsp725S25StcAtcG55B.1.1600.000156
ORF1ab/nsp725S25StcAtcG55B.1.6210.000443
ORF1ab/nsp725S25StcAtcG44AY.300.001583
ORF1ab/nsp725S25StcAtcG34B.10.000027
ORF1ab/nsp725S25StcAtcT14B.10.000009
ORF1ab/nsp725S25StcAtcG44B.1.1.1630.030534
ORF1ab/nsp725S25StcAtcG44B.1.4620.028986
ORF1ab/nsp725S25StcAtcG34P.10.000047
ORF1ab/nsp725S25StcAtcC14P.10.000016
ORF1ab/nsp725S25StcAtcG33AY.440.000018
ORF1ab/nsp725S25StcAtcG23B.1.20.000018
ORF1ab/nsp725S25StcAtcT13B.1.20.000009
ORF1ab/nsp725S25StcAtcG33P.1.150.000697
ORF1ab/nsp725S25StcAtcG22AY.1000.000092
ORF1ab/nsp725S25StcAtcT12AY.4.20.000022
ORF1ab/nsp725S25StcAtcG12AY.4.20.000022
ORF1ab/nsp725S25StcAtcC12B.1.10.000018
ORF1ab/nsp725S25StcAtcG12B.1.10.000018
ORF1ab/nsp725S25StcAtcG22B.1.1.1590.009346
ORF1ab/nsp725S25StcAtcG11AY.100.00053
ORF1ab/nsp725S25StcAtcG11AY.1100.000113
ORF1ab/nsp725S25StcAtcG11AY.1130.000142
ORF1ab/nsp725S25StcAtcG11AY.1170.000085
ORF1ab/nsp725S25StcAtcG11AY.1200.000037
ORF1ab/nsp725S25StcAtcG11AY.200.000039
ORF1ab/nsp725S25StcAtcG11AY.260.000028
ORF1ab/nsp725S25StcAtcG11AY.3.10.000085
ORF1ab/nsp725S25StcAtcG11AY.330.000067
ORF1ab/nsp725S25StcAtcG11AY.39.10.00004
ORF1ab/nsp725S25StcAtcG11AY.450.000122
ORF1ab/nsp725S25StcAtcC11AY.46.60.000072
ORF1ab/nsp725S25StcAtcG11AY.470.000031
ORF1ab/nsp725S25StcAtcG11AY.540.000095
ORF1ab/nsp725S25StcAtcG11AY.730.000665
ORF1ab/nsp725S25StcAtcG11AY.840.000437
ORF1ab/nsp725S25StcAtcG11AY.920.000287
ORF1ab/nsp725S25StcAtcG11B.1.1.2630.001558
ORF1ab/nsp725S25StcAtcG11B.1.1.3060.000438
ORF1ab/nsp725S25StcAtcG11B.1.2430.00007
ORF1ab/nsp725S25StcAtcG11B.1.2580.000067
ORF1ab/nsp725S25StcAtcG11B.1.3230.020833
ORF1ab/nsp725S25StcAtcG11B.1.3510.00003
ORF1ab/nsp725S25StcAtcG11B.1.36.220.001208
ORF1ab/nsp725S25StcAtcG11B.1.4270.00005
ORF1ab/nsp725S25StcAtcG11B.1.5250.000113
ORF1ab/nsp725S25StcAtcG11P.1.140.000048
ORF1ab/nsp725S25StcAtcG11P.30.001595
ORF1ab/nsp725S25StcAtcT11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.