CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = S25L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp725S25LS3884LnonsyntCatTa11772117680.9996611915-11917
ORF1ab/nsp725S25LS3884LnonsynTCaCTa1177240.00033978911915-11917

Details of the mutation S25L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp725S25LtCatTa1176811772All0.002251
ORF1ab/nsp725S25LTCaCTa411772All0.000001
ORF1ab/nsp725S25LtCatTa31253125B.1.4970.983632
ORF1ab/nsp725S25LtCatTa21662166B.10.01984
ORF1ab/nsp725S25LtCatTa11321132B.1.5090.980087
ORF1ab/nsp725S25LtCatTa949949B.1.4990.996849
ORF1ab/nsp725S25LtCatTa521521B.1.1.5190.020689
ORF1ab/nsp725S25LtCatTa395395B.1.5030.982587
ORF1ab/nsp725S25LtCatTa382382B.1.31
ORF1ab/nsp725S25LtCatTa225225B.1.5050.986842
ORF1ab/nsp725S25LtCatTa210210AY.40.000327
ORF1ab/nsp725S25LtCatTa140140B.1.1.1280.992908
ORF1ab/nsp725S25LtCatTa133133B.1.5010.977941
ORF1ab/nsp725S25LtCatTa122122B.1.1.70.000109
ORF1ab/nsp725S25LtCatTa110110B.1.4951
ORF1ab/nsp725S25LtCatTa103103B.1.20.000907
ORF1ab/nsp725S25LtCatTa100100AY.250.000601
ORF1ab/nsp725S25LtCatTa8989AY.1030.000553
ORF1ab/nsp725S25LtCatTa8787B.1.5070.977528
ORF1ab/nsp725S25LtCatTa7777B.1.617.20.00029
ORF1ab/nsp725S25LtCatTa6161B.1.2400.013149
ORF1ab/nsp725S25LtCatTa5959B.1.10.00107
ORF1ab/nsp725S25LtCatTa5858AY.4.50.006235
ORF1ab/nsp725S25LtCatTa5656AY.30.000557
ORF1ab/nsp725S25LtCatTa5555AY.50.001136
ORF1ab/nsp725S25LtCatTa5353B.1.6040.913793
ORF1ab/nsp725S25LtCatTa5353B.1.6370.003873
ORF1ab/nsp725S25LtCatTa4949B.1.4981
ORF1ab/nsp725S25LtCatTa4444B.1.3591
ORF1ab/nsp725S25LtCatTa4343AY.46.20.027319
ORF1ab/nsp725S25LtCatTa4242B.1.1.3731
ORF1ab/nsp725S25LtCatTa3939B.1.4931
ORF1ab/nsp725S25LtCatTa3939B.1.5081
ORF1ab/nsp725S25LtCatTa3838AY.390.000939
ORF1ab/nsp725S25LtCatTa3737B.1.5060.880952
ORF1ab/nsp725S25LtCatTa3232AY.430.000142
ORF1ab/nsp725S25LtCatTa3232B.1.5041
ORF1ab/nsp725S25LtCatTa2830AY.440.00017
ORF1ab/nsp725S25LTCaCTa230AY.440.000012
ORF1ab/nsp725S25LtCatTa2929B.1.4941
ORF1ab/nsp725S25LtCatTa2727B.1.3510.000803
ORF1ab/nsp725S25LtCatTa2727B.1.4290.000635
ORF1ab/nsp725S25LtCatTa2525AY.200.000972
ORF1ab/nsp725S25LtCatTa2525B.1.5960.002178
ORF1ab/nsp725S25LtCatTa2525B.1.6151
ORF1ab/nsp725S25LtCatTa2424AY.1190.000847
ORF1ab/nsp725S25LtCatTa2424B.1.1.2220.004896
ORF1ab/nsp725S25LtCatTa2424B.1.1770.000316
ORF1ab/nsp725S25LtCatTa2424B.1.6110.96
ORF1ab/nsp725S25LtCatTa2121AY.39.10.000832
ORF1ab/nsp725S25LtCatTa2020B.1.3090.952381
ORF1ab/nsp725S25LtCatTa1919B.1.5021
ORF1ab/nsp725S25LtCatTa1717B.1.5260.0004
ORF1ab/nsp725S25LtCatTa1616AY.1180.001002
ORF1ab/nsp725S25LtCatTa1616B.1.6090.00767
ORF1ab/nsp725S25LtCatTa1515AY.1020.000398
ORF1ab/nsp725S25LtCatTa1414AY.330.000935
ORF1ab/nsp725S25LtCatTa1414B.1.3370.078212
ORF1ab/nsp725S25LtCatTa1414B.1.5000.736842
ORF1ab/nsp725S25LtCatTa1313B.1.5610.005161
ORF1ab/nsp725S25LtCatTa1313B.1.5970.060185
ORF1ab/nsp725S25LtCatTa1111AY.4.20.000239
ORF1ab/nsp725S25LtCatTa1111AY.60.000452
ORF1ab/nsp725S25LtCatTa1111B.1.2210.000781
ORF1ab/nsp725S25LtCatTa1010B.1.1.700.003411
ORF1ab/nsp725S25LtCatTa1010B.1.110.30.007184
ORF1ab/nsp725S25LtCatTa1010B.1.36.290.005173
ORF1ab/nsp725S25LtCatTa99AY.290.000142
ORF1ab/nsp725S25LtCatTa99AY.750.000504
ORF1ab/nsp725S25LtCatTa99AY.980.000711
ORF1ab/nsp725S25LtCatTa99B.1.4270.000454
ORF1ab/nsp725S25LtCatTa99B.1.499.11
ORF1ab/nsp725S25LtCatTa77AY.940.003099
ORF1ab/nsp725S25LtCatTa77B.1.1.4640.010309
ORF1ab/nsp725S25LtCatTa77B.1.177.810.001325
ORF1ab/nsp725S25LtCatTa77B.1.4680.04
ORF1ab/nsp725S25LtCatTa77B.1.4960.875
ORF1ab/nsp725S25LtCatTa77R.10.00063
ORF1ab/nsp725S25LtCatTa66AY.340.000582
ORF1ab/nsp725S25LtCatTa66B0.000767
ORF1ab/nsp725S25LtCatTa66B.1.1600.000187
ORF1ab/nsp725S25LtCatTa55AY.1000.00023
ORF1ab/nsp725S25LtCatTa55AY.260.000142
ORF1ab/nsp725S25LtCatTa55AY.460.00052
ORF1ab/nsp725S25LtCatTa55B.1.1.280.001556
ORF1ab/nsp725S25LtCatTa55B.1.3670.003962
ORF1ab/nsp725S25LtCatTa55B.1.3830.045045
ORF1ab/nsp725S25LtCatTa240.111111
ORF1ab/nsp725S25LTCaCTa240.111111
ORF1ab/nsp725S25LtCatTa44AY.1130.00057
ORF1ab/nsp725S25LtCatTa44AY.1140.000924
ORF1ab/nsp725S25LtCatTa44AY.1200.000149
ORF1ab/nsp725S25LtCatTa44AY.120.10.001284
ORF1ab/nsp725S25LtCatTa44AY.46.60.000289
ORF1ab/nsp725S25LtCatTa44B.1.1.5230.00625
ORF1ab/nsp725S25LtCatTa44B.1.1570.01194
ORF1ab/nsp725S25LtCatTa44B.1.360.000584
ORF1ab/nsp725S25LtCatTa44B.1.3620.006163
ORF1ab/nsp725S25LtCatTa44B.1.3980.011905
ORF1ab/nsp725S25LtCatTa44B.1.5460.014815
ORF1ab/nsp725S25LtCatTa44B.1.617.10.000516
ORF1ab/nsp725S25LtCatTa44P.10.000063
ORF1ab/nsp725S25LtCatTa33AY.116.10.000934
ORF1ab/nsp725S25LtCatTa33AY.420.000121
ORF1ab/nsp725S25LtCatTa33AY.740.000347
ORF1ab/nsp725S25LtCatTa33AY.9.20.00011
ORF1ab/nsp725S25LtCatTa33B.1.1.370.000579
ORF1ab/nsp725S25LtCatTa33B.1.177.440.001557
ORF1ab/nsp725S25LtCatTa33B.1.3020.04
ORF1ab/nsp725S25LtCatTa33B.1.595.30.078947
ORF1ab/nsp725S25LtCatTa33B.1.6210.000266
ORF1ab/nsp725S25LtCatTa22A0.000774
ORF1ab/nsp725S25LtCatTa22AU.20.004843
ORF1ab/nsp725S25LtCatTa22AY.1160.000574
ORF1ab/nsp725S25LtCatTa22AY.1210.000271
ORF1ab/nsp725S25LtCatTa22AY.160.000759
ORF1ab/nsp725S25LtCatTa22AY.230.000139
ORF1ab/nsp725S25LtCatTa22AY.270.000129
ORF1ab/nsp725S25LtCatTa22AY.98.10.000097
ORF1ab/nsp725S25LtCatTa22AY.99.20.000184
ORF1ab/nsp725S25LtCatTa22B.1.1.2140.000111
ORF1ab/nsp725S25LtCatTa22B.1.1.2690.002706
ORF1ab/nsp725S25LtCatTa22B.1.1.2940.002532
ORF1ab/nsp725S25LtCatTa22B.1.1.2970.004474
ORF1ab/nsp725S25LtCatTa22B.1.1.3040.005618
ORF1ab/nsp725S25LtCatTa22B.1.1.3480.001592
ORF1ab/nsp725S25LtCatTa22B.1.1.3620.011236
ORF1ab/nsp725S25LtCatTa22B.1.1.3980.006452
ORF1ab/nsp725S25LtCatTa22B.1.1.4090.005666
ORF1ab/nsp725S25LtCatTa22B.1.1.500.001358
ORF1ab/nsp725S25LtCatTa22B.1.1.5260.007092
ORF1ab/nsp725S25LtCatTa22B.1.1260.002551
ORF1ab/nsp725S25LtCatTa22B.1.177.560.001335
ORF1ab/nsp725S25LtCatTa22B.1.177.730.001133
ORF1ab/nsp725S25LtCatTa22B.1.2580.000133
ORF1ab/nsp725S25LtCatTa22B.1.3330.021053
ORF1ab/nsp725S25LtCatTa22B.1.3490.00143
ORF1ab/nsp725S25LtCatTa22B.1.36.180.00084
ORF1ab/nsp725S25LtCatTa22B.1.3810.015625
ORF1ab/nsp725S25LtCatTa22B.1.4340.105263
ORF1ab/nsp725S25LtCatTa22B.1.5410.00885
ORF1ab/nsp725S25LtCatTa22B.1.5820.000981
ORF1ab/nsp725S25LtCatTa22C.380.016129
ORF1ab/nsp725S25LtCatTa22P.1.100.000539
ORF1ab/nsp725S25LtCatTa22Q.10.000253
ORF1ab/nsp725S25LtCatTa11A.210.00277
ORF1ab/nsp725S25LtCatTa11AY.1040.001984
ORF1ab/nsp725S25LtCatTa11AY.1080.001103
ORF1ab/nsp725S25LtCatTa11AY.140.000088
ORF1ab/nsp725S25LtCatTa11AY.39.1.10.000725
ORF1ab/nsp725S25LtCatTa11AY.4.2.10.000149
ORF1ab/nsp725S25LtCatTa11AY.450.000122
ORF1ab/nsp725S25LtCatTa11AY.46.40.000165
ORF1ab/nsp725S25LtCatTa11AY.470.000031
ORF1ab/nsp725S25LtCatTa11AY.5.40.000277
ORF1ab/nsp725S25LtCatTa11AY.510.000909
ORF1ab/nsp725S25LtCatTa11AY.530.000288
ORF1ab/nsp725S25LtCatTa11AY.540.000095
ORF1ab/nsp725S25LtCatTa11AY.550.000917
ORF1ab/nsp725S25LtCatTa11AY.570.000656
ORF1ab/nsp725S25LtCatTa11AY.870.000833
ORF1ab/nsp725S25LtCatTa11AY.880.000884
ORF1ab/nsp725S25LtCatTa11AY.950.000761
ORF1ab/nsp725S25LtCatTa11AY.99.10.001553
ORF1ab/nsp725S25LtCatTa11B.1.1.10.000327
ORF1ab/nsp725S25LtCatTa11B.1.1.120.007463
ORF1ab/nsp725S25LtCatTa11B.1.1.1700.001247
ORF1ab/nsp725S25LtCatTa11B.1.1.1750.076923
ORF1ab/nsp725S25LtCatTa11B.1.1.2360.006897
ORF1ab/nsp725S25LtCatTa11B.1.1.2740.005051
ORF1ab/nsp725S25LtCatTa11B.1.1.3060.000438
ORF1ab/nsp725S25LtCatTa11B.1.1.3170.000412
ORF1ab/nsp725S25LtCatTa11B.1.1.3260.001761
ORF1ab/nsp725S25LtCatTa11B.1.1.3330.001076
ORF1ab/nsp725S25LtCatTa11B.1.1.3350.012987
ORF1ab/nsp725S25LtCatTa11B.1.1.340.013158
ORF1ab/nsp725S25LtCatTa11B.1.1.3720.000689
ORF1ab/nsp725S25LtCatTa11B.1.1.3880.045455
ORF1ab/nsp725S25LtCatTa11B.1.1.4160.000905
ORF1ab/nsp725S25LtCatTa11B.1.1.450.014085
ORF1ab/nsp725S25LtCatTa11B.1.1.4850.016667
ORF1ab/nsp725S25LtCatTa11B.1.1.560.017857
ORF1ab/nsp725S25LtCatTa11B.1.1.80.003584
ORF1ab/nsp725S25LtCatTa11B.1.1150.021739
ORF1ab/nsp725S25LtCatTa11B.1.1400.018868
ORF1ab/nsp725S25LtCatTa11B.1.1460.004237
ORF1ab/nsp725S25LtCatTa11B.1.160.320.004292
ORF1ab/nsp725S25LtCatTa11B.1.1670.007812
ORF1ab/nsp725S25LtCatTa11B.1.177.160.000664
ORF1ab/nsp725S25LtCatTa11B.1.177.180.00116
ORF1ab/nsp725S25LtCatTa11B.1.177.210.000076
ORF1ab/nsp725S25LtCatTa11B.1.177.350.000691
ORF1ab/nsp725S25LtCatTa11B.1.177.40.000211
ORF1ab/nsp725S25LtCatTa11B.1.177.50.001242
ORF1ab/nsp725S25LtCatTa11B.1.177.600.000218
ORF1ab/nsp725S25LtCatTa11B.1.177.70.000165
ORF1ab/nsp725S25LtCatTa11B.1.1890.004292
ORF1ab/nsp725S25LtCatTa11B.1.2120.016667
ORF1ab/nsp725S25LtCatTa11B.1.2220.001692
ORF1ab/nsp725S25LtCatTa11B.1.2320.000537
ORF1ab/nsp725S25LtCatTa11B.1.2350.002519
ORF1ab/nsp725S25LtCatTa11B.1.2430.00007
ORF1ab/nsp725S25LtCatTa11B.1.3010.005917
ORF1ab/nsp725S25LtCatTa11B.1.3160.111111
ORF1ab/nsp725S25LtCatTa11B.1.351.20.000303
ORF1ab/nsp725S25LtCatTa11B.1.36.170.000494
ORF1ab/nsp725S25LtCatTa11B.1.4000.000429
ORF1ab/nsp725S25LtCatTa11B.1.4220.000812
ORF1ab/nsp725S25LtCatTa11B.1.4260.001009
ORF1ab/nsp725S25LtCatTa11B.1.4280.00102
ORF1ab/nsp725S25LtCatTa11B.1.438.10.000107
ORF1ab/nsp725S25LtCatTa11B.1.4530.003236
ORF1ab/nsp725S25LtCatTa11B.1.4660.023256
ORF1ab/nsp725S25LtCatTa11B.1.4740.001901
ORF1ab/nsp725S25LtCatTa11B.1.5170.000427
ORF1ab/nsp725S25LtCatTa11B.1.5640.000426
ORF1ab/nsp725S25LtCatTa11B.1.5740.002151
ORF1ab/nsp725S25LtCatTa11B.1.5750.000303
ORF1ab/nsp725S25LtCatTa11B.1.5950.000261
ORF1ab/nsp725S25LtCatTa11B.1.6010.030303
ORF1ab/nsp725S25LtCatTa11B.1.6050.005952
ORF1ab/nsp725S25LtCatTa11B.1.6120.002653
ORF1ab/nsp725S25LtCatTa11B.1.6190.000871
ORF1ab/nsp725S25LtCatTa11B.1.6250.002353
ORF1ab/nsp725S25LtCatTa11B.1.6270.00202
ORF1ab/nsp725S25LtCatTa11B.1.6280.000352
ORF1ab/nsp725S25LtCatTa11B.1.760.011364
ORF1ab/nsp725S25LtCatTa11B.1.810.021277
ORF1ab/nsp725S25LtCatTa11B.1.9.50.005682
ORF1ab/nsp725S25LtCatTa11B.4.10.018868
ORF1ab/nsp725S25LtCatTa11C.10.002392
ORF1ab/nsp725S25LtCatTa11C.370.000116
ORF1ab/nsp725S25LtCatTa11P.1.170.000162
ORF1ab/nsp725S25LtCatTa11P.1.20.001156
ORF1ab/nsp725S25LtCatTa11P.20.000187
ORF1ab/nsp725S25LtCatTa11R.20.014493