CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = N78N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp778N78NN3937NsynaaCaaT98879887112074-12076

Details of the mutation N78N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp778N78NaaCaaT98879887All0.001891
ORF1ab/nsp778N78NaaCaaT22262226B.1.1.70.001993
ORF1ab/nsp778N78NaaCaaT940940Q.10.118747
ORF1ab/nsp778N78NaaCaaT832832B.1.617.20.003133
ORF1ab/nsp778N78NaaCaaT588588AY.1060.196919
ORF1ab/nsp778N78NaaCaaT572572AY.40.00089
ORF1ab/nsp778N78NaaCaaT372372AY.1020.009863
ORF1ab/nsp778N78NaaCaaT329329B.1.4290.007741
ORF1ab/nsp778N78NaaCaaT283283AY.120.089444
ORF1ab/nsp778N78NaaCaaT216216AY.5.30.072874
ORF1ab/nsp778N78NaaCaaT204204AY.430.000904
ORF1ab/nsp778N78NaaCaaT184184AY.30.00183
ORF1ab/nsp778N78NaaCaaT149149AY.440.000907
ORF1ab/nsp778N78NaaCaaT147147B.1.20.001294
ORF1ab/nsp778N78NaaCaaT114114P.10.001796
ORF1ab/nsp778N78NaaCaaT111111B.10.001017
ORF1ab/nsp778N78NaaCaaT103103AD.10.423868
ORF1ab/nsp778N78NaaCaaT9696B.1.5260.002256
ORF1ab/nsp778N78NaaCaaT8787B.1.1600.002713
ORF1ab/nsp778N78NaaCaaT8585AY.1030.000528
ORF1ab/nsp778N78NaaCaaT7777B.1.10.001397
ORF1ab/nsp778N78NaaCaaT7272AY.390.001779
ORF1ab/nsp778N78NaaCaaT6969B.1.4410.663462
ORF1ab/nsp778N78NaaCaaT6969P.1.160.025814
ORF1ab/nsp778N78NaaCaaT6767AY.1000.003082
ORF1ab/nsp778N78NaaCaaT6767B.1.3510.001992
ORF1ab/nsp778N78NaaCaaT6161AY.980.004819
ORF1ab/nsp778N78NaaCaaT6060AY.250.000361
ORF1ab/nsp778N78NaaCaaT5959AY.3.10.00503
ORF1ab/nsp778N78NaaCaaT5959B.1.177.770.042847
ORF1ab/nsp778N78NaaCaaT5353B.1.6210.004692
ORF1ab/nsp778N78NaaCaaT4444AY.90.002974
ORF1ab/nsp778N78NaaCaaT4141B.1.5960.003573
ORF1ab/nsp778N78NaaCaaT3838B.1.1770.0005
ORF1ab/nsp778N78NaaCaaT3737C.40.37
ORF1ab/nsp778N78NaaCaaT3434B.1.1.2980.02931
ORF1ab/nsp778N78NaaCaaT3333AY.200.001283
ORF1ab/nsp778N78NaaCaaT3333AY.650.017591
ORF1ab/nsp778N78NaaCaaT3030B.1.1.2970.067114
ORF1ab/nsp778N78NaaCaaT2929AY.230.002023
ORF1ab/nsp778N78NaaCaaT2828B.1.36.290.014485
ORF1ab/nsp778N78NaaCaaT2626AY.1160.007456
ORF1ab/nsp778N78NaaCaaT2525AY.1190.000883
ORF1ab/nsp778N78NaaCaaT2222AY.1170.001859
ORF1ab/nsp778N78NaaCaaT2020AY.460.002082
ORF1ab/nsp778N78NaaCaaT2020B.1.258.170.002079
ORF1ab/nsp778N78NaaCaaT1919B.1.1.5190.000755
ORF1ab/nsp778N78NaaCaaT1919B.1.36.80.019
ORF1ab/nsp778N78NaaCaaT1818B.1.2060.014682
ORF1ab/nsp778N78NaaCaaT1818P.1.150.004182
ORF1ab/nsp778N78NaaCaaT1818P.20.003359
ORF1ab/nsp778N78NaaCaaT1717AY.50.000351
ORF1ab/nsp778N78NaaCaaT1717P.1.40.016602
ORF1ab/nsp778N78NaaCaaT1616AY.260.000453
ORF1ab/nsp778N78NaaCaaT1616AY.290.000252
ORF1ab/nsp778N78NaaCaaT1616AY.840.006999
ORF1ab/nsp778N78NaaCaaT1616B.1.1.4340.005577
ORF1ab/nsp778N78NaaCaaT1616B.1.2320.008598
ORF1ab/nsp778N78NaaCaaT1616B.1.2430.001113
ORF1ab/nsp778N78NaaCaaT1616B.1.2580.001065
ORF1ab/nsp778N78NaaCaaT1616B.1.5640.006814
ORF1ab/nsp778N78NaaCaaT1515AY.39.10.000594
ORF1ab/nsp778N78NaaCaaT1515B.1.4260.015136
ORF1ab/nsp778N78NaaCaaT1414AY.330.000935
ORF1ab/nsp778N78NaaCaaT1414R.10.00126
ORF1ab/nsp778N78NaaCaaT1313AY.470.000404
ORF1ab/nsp778N78NaaCaaT1313AY.610.001362
ORF1ab/nsp778N78NaaCaaT1313B.1.1.2140.000721
ORF1ab/nsp778N78NaaCaaT1313B.1.3240.020867
ORF1ab/nsp778N78NaaCaaT1313B.1.5950.003392
ORF1ab/nsp778N78NaaCaaT1313P.1.140.000621
ORF1ab/nsp778N78NaaCaaT1313W.40.017568
ORF1ab/nsp778N78NaaCaaT1212AY.1130.001709
ORF1ab/nsp778N78NaaCaaT1212AY.240.005172
ORF1ab/nsp778N78NaaCaaT1212AY.920.003447
ORF1ab/nsp778N78NaaCaaT1111B.1.221.20.044177
ORF1ab/nsp778N78NaaCaaT1111B.1.3110.00302
ORF1ab/nsp778N78NaaCaaT1010AY.1200.000372
ORF1ab/nsp778N78NaaCaaT1010B.1.177.860.001835
ORF1ab/nsp778N78NaaCaaT99AY.300.003562
ORF1ab/nsp778N78NaaCaaT99AY.410.002646
ORF1ab/nsp778N78NaaCaaT99AY.60.00037
ORF1ab/nsp778N78NaaCaaT99B.1.1.2410.018634
ORF1ab/nsp778N78NaaCaaT99B.1.1.250.005117
ORF1ab/nsp778N78NaaCaaT99B.1.177.210.000688
ORF1ab/nsp778N78NaaCaaT99C.370.001045
ORF1ab/nsp778N78NaaCaaT88B.1.1.2220.001632
ORF1ab/nsp778N78NaaCaaT88B.1.1.280.00249
ORF1ab/nsp778N78NaaCaaT88B.1.1.3710.083333
ORF1ab/nsp778N78NaaCaaT88B.1.177.830.011852
ORF1ab/nsp778N78NaaCaaT88B.1.2210.000568
ORF1ab/nsp778N78NaaCaaT88B.1.5770.005498
ORF1ab/nsp778N78NaaCaaT77AY.400.00675
ORF1ab/nsp778N78NaaCaaT77AY.420.000282
ORF1ab/nsp778N78NaaCaaT77AY.450.000852
ORF1ab/nsp778N78NaaCaaT77AY.750.000392
ORF1ab/nsp778N78NaaCaaT77AY.9.10.000586
ORF1ab/nsp778N78NaaCaaT77B.1.2340.000924
ORF1ab/nsp778N78NaaCaaT77B.1.360.001021
ORF1ab/nsp778N78NaaCaaT66AY.190.006842
ORF1ab/nsp778N78NaaCaaT66AY.9.20.00022
ORF1ab/nsp778N78NaaCaaT66B.1.1.10.00196
ORF1ab/nsp778N78NaaCaaT66B.1.1.4160.00543
ORF1ab/nsp778N78NaaCaaT66B.1.1390.004399
ORF1ab/nsp778N78NaaCaaT66B.1.2400.001293
ORF1ab/nsp778N78NaaCaaT66B.1.36.380.009852
ORF1ab/nsp778N78NaaCaaT66B.1.4390.035503
ORF1ab/nsp778N78NaaCaaT66B.1.5510.007742
ORF1ab/nsp778N78NaaCaaT66B.1.5880.00546
ORF1ab/nsp778N78NaaCaaT55AY.1180.000313
ORF1ab/nsp778N78NaaCaaT55AY.1210.000677
ORF1ab/nsp778N78NaaCaaT55AY.4.20.000108
ORF1ab/nsp778N78NaaCaaT55AY.670.002321
ORF1ab/nsp778N78NaaCaaT55AY.7.20.002796
ORF1ab/nsp778N78NaaCaaT55B.1.1.3060.002192
ORF1ab/nsp778N78NaaCaaT55B.1.177.70.000824
ORF1ab/nsp778N78NaaCaaT55B.1.177.730.002831
ORF1ab/nsp778N78NaaCaaT55B.1.2230.013889
ORF1ab/nsp778N78NaaCaaT55B.1.416.10.007812
ORF1ab/nsp778N78NaaCaaT55B.1.6030.053191
ORF1ab/nsp778N78NaaCaaT55B.1.6370.000365
ORF1ab/nsp778N78NaaCaaT55C.36.30.002836
ORF1ab/nsp778N78NaaCaaT44AY.1140.000924
ORF1ab/nsp778N78NaaCaaT44AY.270.000259
ORF1ab/nsp778N78NaaCaaT44AY.340.000388
ORF1ab/nsp778N78NaaCaaT44AY.360.000593
ORF1ab/nsp778N78NaaCaaT44AY.4.50.00043
ORF1ab/nsp778N78NaaCaaT44AY.790.004843
ORF1ab/nsp778N78NaaCaaT44AY.910.002922
ORF1ab/nsp778N78NaaCaaT44B0.000511
ORF1ab/nsp778N78NaaCaaT44B.1.1.1860.013746
ORF1ab/nsp778N78NaaCaaT44B.1.1.4200.004024
ORF1ab/nsp778N78NaaCaaT44B.1.1.5280.019231
ORF1ab/nsp778N78NaaCaaT44B.1.177.40.000844
ORF1ab/nsp778N78NaaCaaT44B.1.351.20.00121
ORF1ab/nsp778N78NaaCaaT44B.1.4110.014815
ORF1ab/nsp778N78NaaCaaT44B.1.4130.017021
ORF1ab/nsp778N78NaaCaaT44B.1.5250.000453
ORF1ab/nsp778N78NaaCaaT44B.1.621.10.002023
ORF1ab/nsp778N78NaaCaaT44C.180.010363
ORF1ab/nsp778N78NaaCaaT44D.20.0003
ORF1ab/nsp778N78NaaCaaT44P.1.100.001078
ORF1ab/nsp778N78NaaCaaT33AY.1100.000338
ORF1ab/nsp778N78NaaCaaT33AY.130.000483
ORF1ab/nsp778N78NaaCaaT33AY.140.000264
ORF1ab/nsp778N78NaaCaaT33AY.160.001139
ORF1ab/nsp778N78NaaCaaT33AY.20.001068
ORF1ab/nsp778N78NaaCaaT33AY.46.20.001906
ORF1ab/nsp778N78NaaCaaT33AY.46.60.000217
ORF1ab/nsp778N78NaaCaaT33AY.480.001395
ORF1ab/nsp778N78NaaCaaT33AY.5.40.00083
ORF1ab/nsp778N78NaaCaaT33AY.580.002722
ORF1ab/nsp778N78NaaCaaT33AY.690.00056
ORF1ab/nsp778N78NaaCaaT33AY.75.10.000541
ORF1ab/nsp778N78NaaCaaT33B.1.1.1290.027523
ORF1ab/nsp778N78NaaCaaT33B.1.1.2630.004673
ORF1ab/nsp778N78NaaCaaT33B.1.1.3160.002775
ORF1ab/nsp778N78NaaCaaT33B.1.1.370.000579
ORF1ab/nsp778N78NaaCaaT33B.1.1.830.00813
ORF1ab/nsp778N78NaaCaaT33B.1.1280.001906
ORF1ab/nsp778N78NaaCaaT33B.1.36.170.001482
ORF1ab/nsp778N78NaaCaaT33B.1.4270.000151
ORF1ab/nsp778N78NaaCaaT33Q.80.000495
ORF1ab/nsp778N78NaaCaaT22A0.000774
ORF1ab/nsp778N78NaaCaaT22A.10.000564
ORF1ab/nsp778N78NaaCaaT22A.2.50.000998
ORF1ab/nsp778N78NaaCaaT22A.50.003846
ORF1ab/nsp778N78NaaCaaT22AD.20.000438
ORF1ab/nsp778N78NaaCaaT22AY.10.000791
ORF1ab/nsp778N78NaaCaaT22AY.1050.001286
ORF1ab/nsp778N78NaaCaaT22AY.1110.000366
ORF1ab/nsp778N78NaaCaaT22AY.380.000999
ORF1ab/nsp778N78NaaCaaT22AY.46.50.000397
ORF1ab/nsp778N78NaaCaaT22AY.530.000575
ORF1ab/nsp778N78NaaCaaT22AY.540.000191
ORF1ab/nsp778N78NaaCaaT22AY.550.001835
ORF1ab/nsp778N78NaaCaaT22AY.560.00321
ORF1ab/nsp778N78NaaCaaT22AY.70.000392
ORF1ab/nsp778N78NaaCaaT22AY.740.000231
ORF1ab/nsp778N78NaaCaaT22AY.770.002255
ORF1ab/nsp778N78NaaCaaT22AY.810.003984
ORF1ab/nsp778N78NaaCaaT22AY.98.10.000097
ORF1ab/nsp778N78NaaCaaT22B.1.1.1680.052632
ORF1ab/nsp778N78NaaCaaT22B.1.1.3170.000823
ORF1ab/nsp778N78NaaCaaT22B.1.1.330.000842
ORF1ab/nsp778N78NaaCaaT22B.1.1.3650.011173
ORF1ab/nsp778N78NaaCaaT22B.1.1.4590.030769
ORF1ab/nsp778N78NaaCaaT22B.1.1.5070.017391
ORF1ab/nsp778N78NaaCaaT22B.1.1110.00235
ORF1ab/nsp778N78NaaCaaT22B.1.177.100.001756
ORF1ab/nsp778N78NaaCaaT22B.1.2360.004107
ORF1ab/nsp778N78NaaCaaT22B.1.3200.002491
ORF1ab/nsp778N78NaaCaaT22B.1.36.10.002281
ORF1ab/nsp778N78NaaCaaT22B.1.3770.009132
ORF1ab/nsp778N78NaaCaaT22B.1.3890.002004
ORF1ab/nsp778N78NaaCaaT22B.1.4320.022472
ORF1ab/nsp778N78NaaCaaT22B.1.4700.002809
ORF1ab/nsp778N78NaaCaaT22B.1.4800.004975
ORF1ab/nsp778N78NaaCaaT22B.1.5330.019231
ORF1ab/nsp778N78NaaCaaT22B.1.6090.000959
ORF1ab/nsp778N78NaaCaaT22C.360.001821
ORF1ab/nsp778N78NaaCaaT22P.1.120.000968
ORF1ab/nsp778N78NaaCaaT11AJ.10.045455
ORF1ab/nsp778N78NaaCaaT11AW.10.003049
ORF1ab/nsp778N78NaaCaaT11AY.1010.00049
ORF1ab/nsp778N78NaaCaaT11AY.1040.001984
ORF1ab/nsp778N78NaaCaaT11AY.1090.00074
ORF1ab/nsp778N78NaaCaaT11AY.120.10.000321
ORF1ab/nsp778N78NaaCaaT11AY.16.10.00047
ORF1ab/nsp778N78NaaCaaT11AY.280.00189
ORF1ab/nsp778N78NaaCaaT11AY.29.10.000221
ORF1ab/nsp778N78NaaCaaT11AY.34.10.00051
ORF1ab/nsp778N78NaaCaaT11AY.350.000233
ORF1ab/nsp778N78NaaCaaT11AY.46.40.000165
ORF1ab/nsp778N78NaaCaaT11AY.520.000814
ORF1ab/nsp778N78NaaCaaT11AY.570.000656
ORF1ab/nsp778N78NaaCaaT11AY.590.00053
ORF1ab/nsp778N78NaaCaaT11AY.680.000274
ORF1ab/nsp778N78NaaCaaT11AY.730.000665
ORF1ab/nsp778N78NaaCaaT11AY.820.001357
ORF1ab/nsp778N78NaaCaaT11AY.850.000427
ORF1ab/nsp778N78NaaCaaT11AY.880.000884
ORF1ab/nsp778N78NaaCaaT11AY.890.004902
ORF1ab/nsp778N78NaaCaaT11AY.940.000443
ORF1ab/nsp778N78NaaCaaT11AY.950.000761
ORF1ab/nsp778N78NaaCaaT11AY.970.001701
ORF1ab/nsp778N78NaaCaaT11AY.99.10.001553
ORF1ab/nsp778N78NaaCaaT11AY.99.20.000092
ORF1ab/nsp778N78NaaCaaT11AZ.20.000821
ORF1ab/nsp778N78NaaCaaT11B.1.1.100.001115
ORF1ab/nsp778N78NaaCaaT11B.1.1.150.013514
ORF1ab/nsp778N78NaaCaaT11B.1.1.1530.001095
ORF1ab/nsp778N78NaaCaaT11B.1.1.1570.000913
ORF1ab/nsp778N78NaaCaaT11B.1.1.1700.001247
ORF1ab/nsp778N78NaaCaaT11B.1.1.1760.000439
ORF1ab/nsp778N78NaaCaaT11B.1.1.2160.00089
ORF1ab/nsp778N78NaaCaaT11B.1.1.2200.001859
ORF1ab/nsp778N78NaaCaaT11B.1.1.2770.000759
ORF1ab/nsp778N78NaaCaaT11B.1.1.2800.003086
ORF1ab/nsp778N78NaaCaaT11B.1.1.2910.000742
ORF1ab/nsp778N78NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp778N78NaaCaaT11B.1.1.3180.000302
ORF1ab/nsp778N78NaaCaaT11B.1.1.3220.008772
ORF1ab/nsp778N78NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp778N78NaaCaaT11B.1.1.390.00051
ORF1ab/nsp778N78NaaCaaT11B.1.1.460.004367
ORF1ab/nsp778N78NaaCaaT11B.1.1.5210.005348
ORF1ab/nsp778N78NaaCaaT11B.1.1570.002985
ORF1ab/nsp778N78NaaCaaT11B.1.160.300.002976
ORF1ab/nsp778N78NaaCaaT11B.1.160.320.004292
ORF1ab/nsp778N78NaaCaaT11B.1.1620.005025
ORF1ab/nsp778N78NaaCaaT11B.1.177.50.001242
ORF1ab/nsp778N78NaaCaaT11B.1.177.600.000218
ORF1ab/nsp778N78NaaCaaT11B.1.1820.007246
ORF1ab/nsp778N78NaaCaaT11B.1.1890.004292
ORF1ab/nsp778N78NaaCaaT11B.1.1950.005025
ORF1ab/nsp778N78NaaCaaT11B.1.221.30.000833
ORF1ab/nsp778N78NaaCaaT11B.1.2390.001221
ORF1ab/nsp778N78NaaCaaT11B.1.243.10.022222
ORF1ab/nsp778N78NaaCaaT11B.1.258.190.007092
ORF1ab/nsp778N78NaaCaaT11B.1.258.30.001675
ORF1ab/nsp778N78NaaCaaT11B.1.3280.03125
ORF1ab/nsp778N78NaaCaaT11B.1.36.190.009259
ORF1ab/nsp778N78NaaCaaT11B.1.36.210.00216
ORF1ab/nsp778N78NaaCaaT11B.1.36.260.002857
ORF1ab/nsp778N78NaaCaaT11B.1.36.360.000602
ORF1ab/nsp778N78NaaCaaT11B.1.3690.000285
ORF1ab/nsp778N78NaaCaaT11B.1.390.003906
ORF1ab/nsp778N78NaaCaaT11B.1.4080.00369
ORF1ab/nsp778N78NaaCaaT11B.1.4620.007246
ORF1ab/nsp778N78NaaCaaT11B.1.466.20.000391
ORF1ab/nsp778N78NaaCaaT11B.1.4710.002732
ORF1ab/nsp778N78NaaCaaT11B.1.4990.00105
ORF1ab/nsp778N78NaaCaaT11B.1.5240.001406
ORF1ab/nsp778N78NaaCaaT11B.1.5270.003704
ORF1ab/nsp778N78NaaCaaT11B.1.5610.000397
ORF1ab/nsp778N78NaaCaaT11B.1.564.10.001577
ORF1ab/nsp778N78NaaCaaT11B.1.5650.00081
ORF1ab/nsp778N78NaaCaaT11B.1.5680.001111
ORF1ab/nsp778N78NaaCaaT11B.1.5760.000907
ORF1ab/nsp778N78NaaCaaT11B.1.5820.000491
ORF1ab/nsp778N78NaaCaaT11B.1.6120.002653
ORF1ab/nsp778N78NaaCaaT11B.1.617.10.000129
ORF1ab/nsp778N78NaaCaaT11B.1.6230.000536
ORF1ab/nsp778N78NaaCaaT11B.1.80.001972
ORF1ab/nsp778N78NaaCaaT11B.1.910.002075
ORF1ab/nsp778N78NaaCaaT11C.140.004329
ORF1ab/nsp778N78NaaCaaT11N.60.007092
ORF1ab/nsp778N78NaaCaaT11P.1.130.000898
ORF1ab/nsp778N78NaaCaaT11P.1.170.000162
ORF1ab/nsp778N78NaaCaaT11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.