CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = L56del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp756L56del1L3915del1delcTtc-t740.57142912008-12010
ORF1ab/nsp756L56del1L3915del1delCtt-tt720.28571412008-12010
ORF1ab/nsp756L56del1L3915del1delctTct-710.14285712008-12010

Details of the mutation L56del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp756L56del1cTtc-t47All0.000001
ORF1ab/nsp756L56del1Ctt-tt27All0
ORF1ab/nsp756L56del1ctTct-17All0
ORF1ab/nsp756L56del1Ctt-tt12B.1.1.70.000001
ORF1ab/nsp756L56del1cTtc-t12B.1.1.70.000001
ORF1ab/nsp756L56del1Ctt-tt11AY.50.000021
ORF1ab/nsp756L56del1cTtc-t11B.10.000009
ORF1ab/nsp756L56del1cTtc-t11B.1.20.000009
ORF1ab/nsp756L56del1cTtc-t11B.1.617.20.000004
ORF1ab/nsp756L56del1ctTct-11C.170.055556