CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp7 | 70 | K70N | K3929N | nonsyn | aaG | aaT | 784 | 764 | 0.97449 | 12050-12052 |
ORF1ab/nsp7 | 70 | K70N | K3929N | nonsyn | aaG | aaC | 784 | 20 | 0.0255102 | 12050-12052 |
Details of the mutation K70N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 764 | 784 | All | 0.000146 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 20 | 784 | All | 0.000004 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 85 | 85 | B.1.1 | 0.001542 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 81 | 82 | AY.4 | 0.000126 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 1 | 82 | AY.4 | 0.000002 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 55 | 56 | AY.43 | 0.000244 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 1 | 56 | AY.43 | 0.000004 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 51 | 51 | B.1.429 | 0.0012 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 49 | 49 | B.1.177.57 | 0.013768 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 37 | 37 | B.1.1.70 | 0.012619 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 29 | 29 | AY.44 | 0.000177 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 24 | 24 | AY.25 | 0.000144 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 9 | 16 | AY.103 | 0.000056 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 7 | 16 | AY.103 | 0.000043 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 11 | 11 | AY.5.3 | 0.003711 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 6 | 11 | B.1.177 | 0.000079 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 5 | 11 | B.1.177 | 0.000066 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 7 | 7 | AY.46.2 | 0.004447 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 7 | 7 | B.1.9.5 | 0.039773 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 5 | 6 | B.1.206 | 0.004078 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 1 | 6 | B.1.206 | 0.000816 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 5 | 5 | B.1.128 | 0.003177 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 5 | 5 | B.1.298 | 0.010571 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | AZ.3 | 0.004559 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | B.1.1.186 | 0.010309 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp7 | 70 | K70N | aaG | aaT | 1 | 1 | P.4 | 0.003802 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|