CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = D77D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp777D77DD3936DsyngaCgaT2640126401112071-12073

Details of the mutation D77D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp777D77DgaCgaT2640126401All0.00505
ORF1ab/nsp777D77DgaCgaT2204022040AY.420.886672
ORF1ab/nsp777D77DgaCgaT800800AY.60.032903
ORF1ab/nsp777D77DgaCgaT464464B.1.1.70.000415
ORF1ab/nsp777D77DgaCgaT296296B.1.617.20.001115
ORF1ab/nsp777D77DgaCgaT287287B.1.2210.020386
ORF1ab/nsp777D77DgaCgaT240240B.10.002198
ORF1ab/nsp777D77DgaCgaT221221AY.430.000979
ORF1ab/nsp777D77DgaCgaT201201B.1.10.003646
ORF1ab/nsp777D77DgaCgaT189189P.20.035274
ORF1ab/nsp777D77DgaCgaT152152B.1.20.001338
ORF1ab/nsp777D77DgaCgaT141141AY.1030.000875
ORF1ab/nsp777D77DgaCgaT8989AY.440.000542
ORF1ab/nsp777D77DgaCgaT8989B.1.1770.001172
ORF1ab/nsp777D77DgaCgaT7878B.1.5260.001833
ORF1ab/nsp777D77DgaCgaT7171B.1.2430.004941
ORF1ab/nsp777D77DgaCgaT7070B.1.3510.002081
ORF1ab/nsp777D77DgaCgaT6464B.1.1.5260.22695
ORF1ab/nsp777D77DgaCgaT5151AY.750.002857
ORF1ab/nsp777D77DgaCgaT4848AY.39.10.001901
ORF1ab/nsp777D77DgaCgaT4040AY.250.000241
ORF1ab/nsp777D77DgaCgaT3838Q.20.023313
ORF1ab/nsp777D77DgaCgaT3434B.1.2400.007329
ORF1ab/nsp777D77DgaCgaT3434P.10.000536
ORF1ab/nsp777D77DgaCgaT2929AY.40.000045
ORF1ab/nsp777D77DgaCgaT2525AY.1200.000929
ORF1ab/nsp777D77DgaCgaT2424B.1.3670.019017
ORF1ab/nsp777D77DgaCgaT2424B.1.6180.096774
ORF1ab/nsp777D77DgaCgaT2323B.1.2410.018669
ORF1ab/nsp777D77DgaCgaT1919AY.260.000538
ORF1ab/nsp777D77DgaCgaT1919B.1.2580.001264
ORF1ab/nsp777D77DgaCgaT1818B.1.1600.000561
ORF1ab/nsp777D77DgaCgaT1717AY.4.20.000369
ORF1ab/nsp777D77DgaCgaT1717AY.470.000529
ORF1ab/nsp777D77DgaCgaT1515D.41
ORF1ab/nsp777D77DgaCgaT1515P.1.150.003485
ORF1ab/nsp777D77DgaCgaT1414B.1.3610.018041
ORF1ab/nsp777D77DgaCgaT1313A.2.50.006487
ORF1ab/nsp777D77DgaCgaT1313AY.1190.000459
ORF1ab/nsp777D77DgaCgaT1313AY.99.20.001198
ORF1ab/nsp777D77DgaCgaT1313B.1.1.460.056769
ORF1ab/nsp777D77DgaCgaT1313B.1.5950.003392
ORF1ab/nsp777D77DgaCgaT1313P.60.040881
ORF1ab/nsp777D77DgaCgaT1212AY.46.60.000866
ORF1ab/nsp777D77DgaCgaT1212AY.9.20.000441
ORF1ab/nsp777D77DgaCgaT1212B.1.1.1330.101695
ORF1ab/nsp777D77DgaCgaT1212B.1.258.40.041379
ORF1ab/nsp777D77DgaCgaT1212C.370.001393
ORF1ab/nsp777D77DgaCgaT1111B.1.177.810.002083
ORF1ab/nsp777D77DgaCgaT1010A.20.006618
ORF1ab/nsp777D77DgaCgaT1010AY.5.40.002767
ORF1ab/nsp777D77DgaCgaT1010B.1.1.330.004209
ORF1ab/nsp777D77DgaCgaT99B.1.1.3720.006198
ORF1ab/nsp777D77DgaCgaT99B.1.6210.000797
ORF1ab/nsp777D77DgaCgaT99D.20.000675
ORF1ab/nsp777D77DgaCgaT99P.1.70.002874
ORF1ab/nsp777D77DgaCgaT66A0.002322
ORF1ab/nsp777D77DgaCgaT66AY.1160.001721
ORF1ab/nsp777D77DgaCgaT66AY.330.000401
ORF1ab/nsp777D77DgaCgaT66AY.46.30.005602
ORF1ab/nsp777D77DgaCgaT66B.1.1.1210.014563
ORF1ab/nsp777D77DgaCgaT66B.1.3960.004234
ORF1ab/nsp777D77DgaCgaT55AY.1020.000133
ORF1ab/nsp777D77DgaCgaT55AY.760.024155
ORF1ab/nsp777D77DgaCgaT55B0.000639
ORF1ab/nsp777D77DgaCgaT55B.1.1.2070.00591
ORF1ab/nsp777D77DgaCgaT55B.1.177.210.000382
ORF1ab/nsp777D77DgaCgaT55B.1.177.330.008224
ORF1ab/nsp777D77DgaCgaT55B.1.617.10.000645
ORF1ab/nsp777D77DgaCgaT44B.1.1.3180.001207
ORF1ab/nsp777D77DgaCgaT44B.1.3690.001141
ORF1ab/nsp777D77DgaCgaT44P.1.90.019231
ORF1ab/nsp777D77DgaCgaT33AY.230.000209
ORF1ab/nsp777D77DgaCgaT33AY.450.000365
ORF1ab/nsp777D77DgaCgaT33B.1.351.10.115385
ORF1ab/nsp777D77DgaCgaT33B.1.5250.000339
ORF1ab/nsp777D77DgaCgaT33B.1.5960.000261
ORF1ab/nsp777D77DgaCgaT33P.1.140.000143
ORF1ab/nsp777D77DgaCgaT22AY.120.20.002571
ORF1ab/nsp777D77DgaCgaT22AY.460.000208
ORF1ab/nsp777D77DgaCgaT22AY.800.002257
ORF1ab/nsp777D77DgaCgaT22AY.920.000575
ORF1ab/nsp777D77DgaCgaT22AY.98.10.000097
ORF1ab/nsp777D77DgaCgaT22B.1.1.100.00223
ORF1ab/nsp777D77DgaCgaT22B.1.1.2220.000408
ORF1ab/nsp777D77DgaCgaT22B.1.1.3440.021505
ORF1ab/nsp777D77DgaCgaT22B.1.1.3560.017094
ORF1ab/nsp777D77DgaCgaT22B.1.177.800.003824
ORF1ab/nsp777D77DgaCgaT22B.1.220.002635
ORF1ab/nsp777D77DgaCgaT22B.1.36.80.002
ORF1ab/nsp777D77DgaCgaT22B.1.4270.000101
ORF1ab/nsp777D77DgaCgaT22B.1.6190.001742
ORF1ab/nsp777D77DgaCgaT11A.23.10.000704
ORF1ab/nsp777D77DgaCgaT11AY.1000.000046
ORF1ab/nsp777D77DgaCgaT11AY.160.00038
ORF1ab/nsp777D77DgaCgaT11AY.290.000016
ORF1ab/nsp777D77DgaCgaT11AY.34.10.00051
ORF1ab/nsp777D77DgaCgaT11AY.390.000025
ORF1ab/nsp777D77DgaCgaT11AY.4.2.10.000149
ORF1ab/nsp777D77DgaCgaT11AY.4.50.000107
ORF1ab/nsp777D77DgaCgaT11AY.520.000814
ORF1ab/nsp777D77DgaCgaT11AY.530.000288
ORF1ab/nsp777D77DgaCgaT11AY.680.000274
ORF1ab/nsp777D77DgaCgaT11AY.700.000209
ORF1ab/nsp777D77DgaCgaT11AY.870.000833
ORF1ab/nsp777D77DgaCgaT11AY.90.000068
ORF1ab/nsp777D77DgaCgaT11B.1.1.10.000327
ORF1ab/nsp777D77DgaCgaT11B.1.1.1810.004545
ORF1ab/nsp777D77DgaCgaT11B.1.1.2560.013699
ORF1ab/nsp777D77DgaCgaT11B.1.1.2740.005051
ORF1ab/nsp777D77DgaCgaT11B.1.1.2770.000759
ORF1ab/nsp777D77DgaCgaT11B.1.1.2880.001916
ORF1ab/nsp777D77DgaCgaT11B.1.1.3260.001761
ORF1ab/nsp777D77DgaCgaT11B.1.1.370.000193
ORF1ab/nsp777D77DgaCgaT11B.1.1.390.00051
ORF1ab/nsp777D77DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp777D77DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp777D77DgaCgaT11B.1.1.630.000386
ORF1ab/nsp777D77DgaCgaT11B.1.1.830.00271
ORF1ab/nsp777D77DgaCgaT11B.1.130.002375
ORF1ab/nsp777D77DgaCgaT11B.1.160.280.002924
ORF1ab/nsp777D77DgaCgaT11B.1.1690.014925
ORF1ab/nsp777D77DgaCgaT11B.1.177.170.000821
ORF1ab/nsp777D77DgaCgaT11B.1.177.200.001517
ORF1ab/nsp777D77DgaCgaT11B.1.177.570.000281
ORF1ab/nsp777D77DgaCgaT11B.1.177.60.000977
ORF1ab/nsp777D77DgaCgaT11B.1.177.600.000218
ORF1ab/nsp777D77DgaCgaT11B.1.177.650.000665
ORF1ab/nsp777D77DgaCgaT11B.1.177.790.002342
ORF1ab/nsp777D77DgaCgaT11B.1.177.80.000752
ORF1ab/nsp777D77DgaCgaT11B.1.177.830.001481
ORF1ab/nsp777D77DgaCgaT11B.1.177.860.000183
ORF1ab/nsp777D77DgaCgaT11B.1.2340.000132
ORF1ab/nsp777D77DgaCgaT11B.1.3110.000275
ORF1ab/nsp777D77DgaCgaT11B.1.3750.00082
ORF1ab/nsp777D77DgaCgaT11B.1.4290.000024
ORF1ab/nsp777D77DgaCgaT11B.1.438.10.000107
ORF1ab/nsp777D77DgaCgaT11B.1.5650.00081
ORF1ab/nsp777D77DgaCgaT11B.1.5760.000907
ORF1ab/nsp777D77DgaCgaT11B.1.6020.006536
ORF1ab/nsp777D77DgaCgaT11B.1.6090.000479
ORF1ab/nsp777D77DgaCgaT11B.40.002208
ORF1ab/nsp777D77DgaCgaT11B.400.000364
ORF1ab/nsp777D77DgaCgaT11C.10.002392
ORF1ab/nsp777D77DgaCgaT11C.300.001727
ORF1ab/nsp777D77DgaCgaT11P.1.10.000318
ORF1ab/nsp777D77DgaCgaT11P.1.120.000484
ORF1ab/nsp777D77DgaCgaT11P.1.130.000898
ORF1ab/nsp777D77DgaCgaT11P.1.170.000162
ORF1ab/nsp777D77DgaCgaT11P.1.20.001156
ORF1ab/nsp777D77DgaCgaT11P.1.40.000977
ORF1ab/nsp777D77DgaCgaT11Q.10.000126
ORF1ab/nsp777D77DgaCgaT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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