CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = D67D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp767D67DD3926DsyngaCgaT31663166112041-12043

Details of the mutation D67D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp767D67DgaCgaT31663166All0.000606
ORF1ab/nsp767D67DgaCgaT832832B.1.36.10.948689
ORF1ab/nsp767D67DgaCgaT497497B.1.1.70.000445
ORF1ab/nsp767D67DgaCgaT242242B.1.1490.828767
ORF1ab/nsp767D67DgaCgaT143143AY.40.000223
ORF1ab/nsp767D67DgaCgaT133133AY.4.50.014296
ORF1ab/nsp767D67DgaCgaT8686B.1.617.20.000324
ORF1ab/nsp767D67DgaCgaT8080P.10.00126
ORF1ab/nsp767D67DgaCgaT7979AK.11
ORF1ab/nsp767D67DgaCgaT5959B.10.00054
ORF1ab/nsp767D67DgaCgaT5757B.1.10.001034
ORF1ab/nsp767D67DgaCgaT5353AY.430.000235
ORF1ab/nsp767D67DgaCgaT5050AY.930.013654
ORF1ab/nsp767D67DgaCgaT4848B.1.2210.00341
ORF1ab/nsp767D67DgaCgaT4444AY.200.00171
ORF1ab/nsp767D67DgaCgaT3535B.1.20.000308
ORF1ab/nsp767D67DgaCgaT3333AY.30.000328
ORF1ab/nsp767D67DgaCgaT3333AY.440.000201
ORF1ab/nsp767D67DgaCgaT3232AY.250.000192
ORF1ab/nsp767D67DgaCgaT3131AY.1030.000192
ORF1ab/nsp767D67DgaCgaT2929B.1.1770.000382
ORF1ab/nsp767D67DgaCgaT2929B.1.617.10.00374
ORF1ab/nsp767D67DgaCgaT2828B.1.1.1590.130841
ORF1ab/nsp767D67DgaCgaT2424B.1.1600.000749
ORF1ab/nsp767D67DgaCgaT1818AY.390.000445
ORF1ab/nsp767D67DgaCgaT1818B.1.258.170.001871
ORF1ab/nsp767D67DgaCgaT1818B.1.5260.000423
ORF1ab/nsp767D67DgaCgaT1717B.1.177.810.003218
ORF1ab/nsp767D67DgaCgaT1616B.1.4290.000376
ORF1ab/nsp767D67DgaCgaT1515AY.1020.000398
ORF1ab/nsp767D67DgaCgaT1414B.1.4970.004407
ORF1ab/nsp767D67DgaCgaT1313AY.60.000535
ORF1ab/nsp767D67DgaCgaT1313B.1.2580.000865
ORF1ab/nsp767D67DgaCgaT1313B.1.3510.000386
ORF1ab/nsp767D67DgaCgaT1313B.1.5610.005161
ORF1ab/nsp767D67DgaCgaT1212AY.50.000248
ORF1ab/nsp767D67DgaCgaT1111B.1.4270.000555
ORF1ab/nsp767D67DgaCgaT1111B.1.6190.009582
ORF1ab/nsp767D67DgaCgaT1010AY.1170.000845
ORF1ab/nsp767D67DgaCgaT1010B.1.214.30.071429
ORF1ab/nsp767D67DgaCgaT88AY.120.10.002568
ORF1ab/nsp767D67DgaCgaT88B.1.177.860.001468
ORF1ab/nsp767D67DgaCgaT88B.1.214.20.004796
ORF1ab/nsp767D67DgaCgaT88B.1.2430.000557
ORF1ab/nsp767D67DgaCgaT77AY.290.00011
ORF1ab/nsp767D67DgaCgaT77B.1.466.20.002739
ORF1ab/nsp767D67DgaCgaT77P.30.011164
ORF1ab/nsp767D67DgaCgaT55AY.4.20.000108
ORF1ab/nsp767D67DgaCgaT55B.1.1.3160.004625
ORF1ab/nsp767D67DgaCgaT55B.1.1.5190.000199
ORF1ab/nsp767D67DgaCgaT55C.370.00058
ORF1ab/nsp767D67DgaCgaT44AY.750.000224
ORF1ab/nsp767D67DgaCgaT44AY.98.10.000194
ORF1ab/nsp767D67DgaCgaT44B.1.1.280.001245
ORF1ab/nsp767D67DgaCgaT44B.1.177.210.000306
ORF1ab/nsp767D67DgaCgaT44B.1.360.000584
ORF1ab/nsp767D67DgaCgaT44B.1.6210.000354
ORF1ab/nsp767D67DgaCgaT44B.1.6370.000292
ORF1ab/nsp767D67DgaCgaT44D.20.0003
ORF1ab/nsp767D67DgaCgaT33A.23.10.002113
ORF1ab/nsp767D67DgaCgaT33AU.20.007264
ORF1ab/nsp767D67DgaCgaT33AY.230.000209
ORF1ab/nsp767D67DgaCgaT33AY.460.000312
ORF1ab/nsp767D67DgaCgaT33AY.490.009585
ORF1ab/nsp767D67DgaCgaT33B.1.1.1700.003741
ORF1ab/nsp767D67DgaCgaT33B.1.3690.000856
ORF1ab/nsp767D67DgaCgaT33B.1.595.40.021898
ORF1ab/nsp767D67DgaCgaT33C.36.30.001702
ORF1ab/nsp767D67DgaCgaT33Q.20.00184
ORF1ab/nsp767D67DgaCgaT22A0.000774
ORF1ab/nsp767D67DgaCgaT22AY.1190.000071
ORF1ab/nsp767D67DgaCgaT22AY.270.000129
ORF1ab/nsp767D67DgaCgaT22AY.330.000134
ORF1ab/nsp767D67DgaCgaT22AY.360.000296
ORF1ab/nsp767D67DgaCgaT22AY.39.10.000079
ORF1ab/nsp767D67DgaCgaT22AY.420.00008
ORF1ab/nsp767D67DgaCgaT22AY.46.50.000397
ORF1ab/nsp767D67DgaCgaT22AY.99.20.000184
ORF1ab/nsp767D67DgaCgaT22B.1.1.2140.000111
ORF1ab/nsp767D67DgaCgaT22B.1.1.2910.001485
ORF1ab/nsp767D67DgaCgaT22B.1.1.3060.000877
ORF1ab/nsp767D67DgaCgaT22B.1.1.3180.000604
ORF1ab/nsp767D67DgaCgaT22B.1.1.4640.002946
ORF1ab/nsp767D67DgaCgaT22B.1.177.50.002484
ORF1ab/nsp767D67DgaCgaT22B.1.177.730.001133
ORF1ab/nsp767D67DgaCgaT22B.1.390.007812
ORF1ab/nsp767D67DgaCgaT22B.1.5170.000854
ORF1ab/nsp767D67DgaCgaT22B.1.5250.000226
ORF1ab/nsp767D67DgaCgaT22B.1.5960.000174
ORF1ab/nsp767D67DgaCgaT22B.1.6090.000959
ORF1ab/nsp767D67DgaCgaT22B.1.6280.000705
ORF1ab/nsp767D67DgaCgaT22P.1.140.000096
ORF1ab/nsp767D67DgaCgaT22P.1.150.000465
ORF1ab/nsp767D67DgaCgaT22P.20.000373
ORF1ab/nsp767D67DgaCgaT11A.2.5.20.001572
ORF1ab/nsp767D67DgaCgaT11A.270.001656
ORF1ab/nsp767D67DgaCgaT11AY.1000.000046
ORF1ab/nsp767D67DgaCgaT11AY.1070.000466
ORF1ab/nsp767D67DgaCgaT11AY.1130.000142
ORF1ab/nsp767D67DgaCgaT11AY.120.000316
ORF1ab/nsp767D67DgaCgaT11AY.1200.000037
ORF1ab/nsp767D67DgaCgaT11AY.1210.000135
ORF1ab/nsp767D67DgaCgaT11AY.20.000356
ORF1ab/nsp767D67DgaCgaT11AY.3.10.000085
ORF1ab/nsp767D67DgaCgaT11AY.340.000097
ORF1ab/nsp767D67DgaCgaT11AY.4.2.10.000149
ORF1ab/nsp767D67DgaCgaT11AY.400.000964
ORF1ab/nsp767D67DgaCgaT11AY.450.000122
ORF1ab/nsp767D67DgaCgaT11AY.46.40.000165
ORF1ab/nsp767D67DgaCgaT11AY.470.000031
ORF1ab/nsp767D67DgaCgaT11AY.5.30.000337
ORF1ab/nsp767D67DgaCgaT11AY.530.000288
ORF1ab/nsp767D67DgaCgaT11AY.540.000095
ORF1ab/nsp767D67DgaCgaT11AY.610.000105
ORF1ab/nsp767D67DgaCgaT11AY.620.000436
ORF1ab/nsp767D67DgaCgaT11AY.640.000595
ORF1ab/nsp767D67DgaCgaT11AY.740.000116
ORF1ab/nsp767D67DgaCgaT11AY.75.10.00018
ORF1ab/nsp767D67DgaCgaT11AY.850.000427
ORF1ab/nsp767D67DgaCgaT11AY.870.000833
ORF1ab/nsp767D67DgaCgaT11AY.90.000068
ORF1ab/nsp767D67DgaCgaT11AY.9.20.000037
ORF1ab/nsp767D67DgaCgaT11AY.900.000684
ORF1ab/nsp767D67DgaCgaT11AY.950.000761
ORF1ab/nsp767D67DgaCgaT11B.1.1.1170.009709
ORF1ab/nsp767D67DgaCgaT11B.1.1.1530.001095
ORF1ab/nsp767D67DgaCgaT11B.1.1.1860.003436
ORF1ab/nsp767D67DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp767D67DgaCgaT11B.1.1.2200.001859
ORF1ab/nsp767D67DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp767D67DgaCgaT11B.1.1.2370.005405
ORF1ab/nsp767D67DgaCgaT11B.1.1.250.000569
ORF1ab/nsp767D67DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp767D67DgaCgaT11B.1.1.3090.005848
ORF1ab/nsp767D67DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp767D67DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp767D67DgaCgaT11B.1.1.3260.001761
ORF1ab/nsp767D67DgaCgaT11B.1.1.3490.010309
ORF1ab/nsp767D67DgaCgaT11B.1.1.370.000193
ORF1ab/nsp767D67DgaCgaT11B.1.1.3710.010417
ORF1ab/nsp767D67DgaCgaT11B.1.1.3890.006061
ORF1ab/nsp767D67DgaCgaT11B.1.1.390.00051
ORF1ab/nsp767D67DgaCgaT11B.1.1.4620.008621
ORF1ab/nsp767D67DgaCgaT11B.1.1.500.000679
ORF1ab/nsp767D67DgaCgaT11B.1.1.530.013699
ORF1ab/nsp767D67DgaCgaT11B.1.1.700.000341
ORF1ab/nsp767D67DgaCgaT11B.1.1700.00431
ORF1ab/nsp767D67DgaCgaT11B.1.177.120.000152
ORF1ab/nsp767D67DgaCgaT11B.1.177.440.000519
ORF1ab/nsp767D67DgaCgaT11B.1.177.570.000281
ORF1ab/nsp767D67DgaCgaT11B.1.177.60.000977
ORF1ab/nsp767D67DgaCgaT11B.1.177.70.000165
ORF1ab/nsp767D67DgaCgaT11B.1.177.770.000726
ORF1ab/nsp767D67DgaCgaT11B.1.2100.002132
ORF1ab/nsp767D67DgaCgaT11B.1.2150.009615
ORF1ab/nsp767D67DgaCgaT11B.1.221.30.000833
ORF1ab/nsp767D67DgaCgaT11B.1.221.40.004167
ORF1ab/nsp767D67DgaCgaT11B.1.2340.000132
ORF1ab/nsp767D67DgaCgaT11B.1.2600.003344
ORF1ab/nsp767D67DgaCgaT11B.1.2650.001271
ORF1ab/nsp767D67DgaCgaT11B.1.3110.000275
ORF1ab/nsp767D67DgaCgaT11B.1.36.180.00042
ORF1ab/nsp767D67DgaCgaT11B.1.36.290.000517
ORF1ab/nsp767D67DgaCgaT11B.1.3820.008929
ORF1ab/nsp767D67DgaCgaT11B.1.3890.001002
ORF1ab/nsp767D67DgaCgaT11B.1.438.10.000107
ORF1ab/nsp767D67DgaCgaT11B.1.4560.003268
ORF1ab/nsp767D67DgaCgaT11B.1.5030.002488
ORF1ab/nsp767D67DgaCgaT11B.1.5050.004386
ORF1ab/nsp767D67DgaCgaT11B.1.5240.001406
ORF1ab/nsp767D67DgaCgaT11B.1.5330.009615
ORF1ab/nsp767D67DgaCgaT11B.1.5800.004065
ORF1ab/nsp767D67DgaCgaT11B.30.000831
ORF1ab/nsp767D67DgaCgaT11B.400.000364
ORF1ab/nsp767D67DgaCgaT11P.1.100.000269
ORF1ab/nsp767D67DgaCgaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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