CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = C72S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp772C72SC3931SnonsynTgtAgt8718490.97474212056-12058
ORF1ab/nsp772C72SC3931SnonsyntGttCt871220.025258312056-12058

Details of the mutation C72S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp772C72STgtAgt849871All0.000162
ORF1ab/nsp772C72StGttCt22871All0.000004
ORF1ab/nsp772C72STgtAgt802802AY.600.752345
ORF1ab/nsp772C72StGttCt1213B.1.20.000106
ORF1ab/nsp772C72STgtAgt113B.1.20.000009
ORF1ab/nsp772C72StGttCt88AY.46.60.000578
ORF1ab/nsp772C72STgtAgt88B.1.1.70.000007
ORF1ab/nsp772C72STgtAgt77AY.470.000218
ORF1ab/nsp772C72STgtAgt440.222222
ORF1ab/nsp772C72STgtAgt33AY.1000.000138
ORF1ab/nsp772C72STgtAgt33AY.430.000013
ORF1ab/nsp772C72STgtAgt22AY.670.000929
ORF1ab/nsp772C72STgtAgt22AY.75.10.000361
ORF1ab/nsp772C72StGttCt12B.10.000009
ORF1ab/nsp772C72STgtAgt12B.10.000009
ORF1ab/nsp772C72STgtAgt22B.1.1770.000026
ORF1ab/nsp772C72STgtAgt22B.1.2580.000133
ORF1ab/nsp772C72STgtAgt11AY.130.000161
ORF1ab/nsp772C72StGttCt11AY.260.000028
ORF1ab/nsp772C72STgtAgt11AY.40.000002
ORF1ab/nsp772C72STgtAgt11AY.440.000006
ORF1ab/nsp772C72STgtAgt11AY.550.000917
ORF1ab/nsp772C72STgtAgt11AY.750.000056
ORF1ab/nsp772C72STgtAgt11AY.880.000884
ORF1ab/nsp772C72STgtAgt11AY.930.000273
ORF1ab/nsp772C72STgtAgt11B.1.10.000018
ORF1ab/nsp772C72STgtAgt11B.1.1.2220.000204
ORF1ab/nsp772C72STgtAgt11B.1.177.210.000076
ORF1ab/nsp772C72STgtAgt11B.1.617.20.000004
ORF1ab/nsp772C72STgtAgt11B.1.6370.000073