CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = A65V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp765A65VA3924VnonsyngCtgTt9829810.99898212035-12037
ORF1ab/nsp765A65VA3924VnonsyngCTgTA98210.0010183312035-12037

Details of the mutation A65V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp765A65VgCtgTt981982All0.000188
ORF1ab/nsp765A65VgCTgTA1982All0
ORF1ab/nsp765A65VgCtgTt213213B.1.1.70.000191
ORF1ab/nsp765A65VgCtgTt151151B.1.20.00133
ORF1ab/nsp765A65VgCtgTt138138B.1.9.40.846626
ORF1ab/nsp765A65VgCtgTt132132B.10.001209
ORF1ab/nsp765A65VgCtgTt3939AY.40.000061
ORF1ab/nsp765A65VgCtgTt2222B.1.1.5190.000874
ORF1ab/nsp765A65VgCtgTt2020B.1.1770.000263
ORF1ab/nsp765A65VgCtgTt1717AY.1030.000106
ORF1ab/nsp765A65VgCtgTt1717B.1.1600.00053
ORF1ab/nsp765A65VgCtgTt1515B.1.4290.000353
ORF1ab/nsp765A65VgCtgTt1414AY.250.000084
ORF1ab/nsp765A65VgCtgTt1414B.1.617.20.000053
ORF1ab/nsp765A65VgCtgTt1313C.36.30.007374
ORF1ab/nsp765A65VgCtgTt1111AY.440.000067
ORF1ab/nsp765A65VgCtgTt1010AY.30.000099
ORF1ab/nsp765A65VgCtgTt88AD.20.001752
ORF1ab/nsp765A65VgCtgTt77AY.1190.000247
ORF1ab/nsp765A65VgCtgTt77AY.20.002493
ORF1ab/nsp765A65VgCtgTt77AY.60.000288
ORF1ab/nsp765A65VgCtgTt77B.1.10.000127
ORF1ab/nsp765A65VgCtgTt77B.1.3510.000208
ORF1ab/nsp765A65VgCtgTt77B.1.90.04321
ORF1ab/nsp765A65VgCtgTt66AY.430.000027
ORF1ab/nsp765A65VgCtgTt55B0.000639
ORF1ab/nsp765A65VgCtgTt55C.370.00058
ORF1ab/nsp765A65VgCtgTt44B.1.2580.000266
ORF1ab/nsp765A65VgCtgTt44B.1.4250.011976
ORF1ab/nsp765A65VgCtgTt34B.1.5260.000071
ORF1ab/nsp765A65VgCTgTA14B.1.5260.000024
ORF1ab/nsp765A65VgCtgTt44B.1.9.50.022727
ORF1ab/nsp765A65VgCtgTt33AY.470.000093
ORF1ab/nsp765A65VgCtgTt33AY.90.000203
ORF1ab/nsp765A65VgCtgTt33B.1.4270.000151
ORF1ab/nsp765A65VgCtgTt33B.1.5950.000783
ORF1ab/nsp765A65VgCtgTt33B.1.5960.000261
ORF1ab/nsp765A65VgCtgTt33C.160.003181
ORF1ab/nsp765A65VgCtgTt33P.1.140.000143
ORF1ab/nsp765A65VgCtgTt220.111111
ORF1ab/nsp765A65VgCtgTt22AY.1000.000092
ORF1ab/nsp765A65VgCtgTt22AY.610.00021
ORF1ab/nsp765A65VgCtgTt22B.1.177.860.000367
ORF1ab/nsp765A65VgCtgTt22B.1.2210.000142
ORF1ab/nsp765A65VgCtgTt22B.1.258.110.000793
ORF1ab/nsp765A65VgCtgTt22P.10.000032
ORF1ab/nsp765A65VgCtgTt11A0.000387
ORF1ab/nsp765A65VgCtgTt11AE.80.000489
ORF1ab/nsp765A65VgCtgTt11AY.10.000396
ORF1ab/nsp765A65VgCtgTt11AY.1170.000085
ORF1ab/nsp765A65VgCtgTt11AY.390.000025
ORF1ab/nsp765A65VgCtgTt11AY.4.20.000022
ORF1ab/nsp765A65VgCtgTt11AY.450.000122
ORF1ab/nsp765A65VgCtgTt11AY.50.000021
ORF1ab/nsp765A65VgCtgTt11AY.750.000056
ORF1ab/nsp765A65VgCtgTt11AY.840.000437
ORF1ab/nsp765A65VgCtgTt11AY.98.10.000048
ORF1ab/nsp765A65VgCtgTt11B.1.1.2070.001182
ORF1ab/nsp765A65VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp765A65VgCtgTt11B.1.1.330.000421
ORF1ab/nsp765A65VgCtgTt11B.1.1.3850.004464
ORF1ab/nsp765A65VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp765A65VgCtgTt11B.1.1.80.003584
ORF1ab/nsp765A65VgCtgTt11B.1.160.160.000929
ORF1ab/nsp765A65VgCtgTt11B.1.160.170.001701
ORF1ab/nsp765A65VgCtgTt11B.1.177.200.001517
ORF1ab/nsp765A65VgCtgTt11B.1.177.330.001645
ORF1ab/nsp765A65VgCtgTt11B.1.177.400.005155
ORF1ab/nsp765A65VgCtgTt11B.1.177.730.000566
ORF1ab/nsp765A65VgCtgTt11B.1.177.90.001332
ORF1ab/nsp765A65VgCtgTt11B.1.258.50.008772
ORF1ab/nsp765A65VgCtgTt11B.1.3240.001605
ORF1ab/nsp765A65VgCtgTt11B.1.3460.001311
ORF1ab/nsp765A65VgCtgTt11B.1.360.000146
ORF1ab/nsp765A65VgCtgTt11B.1.4700.001404
ORF1ab/nsp765A65VgCtgTt11B.1.4800.002488
ORF1ab/nsp765A65VgCtgTt11B.1.5710.009709
ORF1ab/nsp765A65VgCtgTt11B.1.5990.00365
ORF1ab/nsp765A65VgCtgTt11B.1.6090.000479
ORF1ab/nsp765A65VgCtgTt11B.1.617.10.000129
ORF1ab/nsp765A65VgCtgTt11B.1.6210.000089
ORF1ab/nsp765A65VgCtgTt11P.20.000187
ORF1ab/nsp765A65VgCtgTt11Q.40.000455
ORF1ab/nsp765A65VgCtgTt11Q.80.000165
ORF1ab/nsp765A65VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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