CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : Mut = A42A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp742A42AA3901AsyngcTgcC78710.91025611966-11968
ORF1ab/nsp742A42AA3901AsyngcTgcA7850.064102611966-11968
ORF1ab/nsp742A42AA3901AsyngcTgcG7820.02564111966-11968

Details of the mutation A42A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp742A42AgcTgcC7178All0.000014
ORF1ab/nsp742A42AgcTgcA578All0.000001
ORF1ab/nsp742A42AgcTgcG278All0
ORF1ab/nsp742A42AgcTgcC1616B.1.1.70.000014
ORF1ab/nsp742A42AgcTgcC89B.1.617.20.00003
ORF1ab/nsp742A42AgcTgcA19B.1.617.20.000004
ORF1ab/nsp742A42AgcTgcC77AY.440.000043
ORF1ab/nsp742A42AgcTgcC55B.1.1.2140.000277
ORF1ab/nsp742A42AgcTgcC55B.1.3510.000149
ORF1ab/nsp742A42AgcTgcC44AY.50.000083
ORF1ab/nsp742A42AgcTgcC23AY.1030.000012
ORF1ab/nsp742A42AgcTgcA13AY.1030.000006
ORF1ab/nsp742A42AgcTgcC33AY.30.00003
ORF1ab/nsp742A42AgcTgcC33B.10.000027
ORF1ab/nsp742A42AgcTgcC22AY.430.000009
ORF1ab/nsp742A42AgcTgcC22B.1.2220.003384
ORF1ab/nsp742A42AgcTgcA11A0.000387
ORF1ab/nsp742A42AgcTgcC11AY.200.000039
ORF1ab/nsp742A42AgcTgcG11AY.230.00007
ORF1ab/nsp742A42AgcTgcC11AY.40.000002
ORF1ab/nsp742A42AgcTgcC11AY.4.20.000022
ORF1ab/nsp742A42AgcTgcC11AY.460.000104
ORF1ab/nsp742A42AgcTgcC11AY.490.003195
ORF1ab/nsp742A42AgcTgcC11AY.75.10.00018
ORF1ab/nsp742A42AgcTgcC11AY.90.000068
ORF1ab/nsp742A42AgcTgcA11B.1.10.000018
ORF1ab/nsp742A42AgcTgcC11B.1.1.460.004367
ORF1ab/nsp742A42AgcTgcC11B.1.1.50.008333
ORF1ab/nsp742A42AgcTgcC11B.1.1770.000013
ORF1ab/nsp742A42AgcTgcA11B.1.177.210.000076
ORF1ab/nsp742A42AgcTgcG11B.1.3320.003497
ORF1ab/nsp742A42AgcTgcC11B.1.4270.00005
ORF1ab/nsp742A42AgcTgcC11B.1.4290.000024
ORF1ab/nsp742A42AgcTgcC11B.1.5950.000261
ORF1ab/nsp742A42AgcTgcC11B.1.617.10.000129