CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 78

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp778N78NN3937NsynaaCaaT98879887112074-12076
ORF1ab/nsp778N78SN3937SnonsynaAcaGc126812670.99921112074-12076
ORF1ab/nsp778N78SN3937SnonsynaACaGT126810.00078864412074-12076
ORF1ab/nsp778N78DN3937DnonsynAacGac7777112074-12076
ORF1ab/nsp778N78KN3937KnonsynaaCaaA30160.53333312074-12076
ORF1ab/nsp778N78KN3937KnonsynaaCaaG30140.46666712074-12076
ORF1ab/nsp778N78delN3937deldelAAC---1515112074-12076
ORF1ab/nsp778N78YN3937YnonsynAacTac1212112074-12076
ORF1ab/nsp778N78HN3937HnonsynAacCac88112074-12076
ORF1ab/nsp778N78IN3937InonsynaAcaTc430.7512074-12076
ORF1ab/nsp778N78IN3937InonsynaACaTA410.2512074-12076
ORF1ab/nsp778N78TN3937TnonsynaAcaCc320.66666712074-12076
ORF1ab/nsp778N78TN3937TnonsynaACaCA310.33333312074-12076
ORF1ab/nsp778N78LN3937LnonsynAACTTA22112074-12076
ORF1ab/nsp778N78del1N3937del1delAac-ac22112074-12076
ORF1ab/nsp778N78QN3937QnonsynAaCCaA11112074-12076
ORF1ab/nsp778N78del2N3937del2delAAC--T11112074-12076

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp778N78NaaCaaT98879887All0.001891
ORF1ab/nsp778N78NaaCaaT22262226B.1.1.70.001993
ORF1ab/nsp778N78SaAcaGc12671268All0.000242
ORF1ab/nsp778N78SaACaGT11268All0
ORF1ab/nsp778N78NaaCaaT940940Q.10.118747
ORF1ab/nsp778N78NaaCaaT832832B.1.617.20.003133
ORF1ab/nsp778N78NaaCaaT588588AY.1060.196919
ORF1ab/nsp778N78NaaCaaT572572AY.40.00089
ORF1ab/nsp778N78NaaCaaT372372AY.1020.009863
ORF1ab/nsp778N78NaaCaaT329329B.1.4290.007741
ORF1ab/nsp778N78NaaCaaT283283AY.120.089444
ORF1ab/nsp778N78SaAcaGc276276B.1.4690.99639
ORF1ab/nsp778N78NaaCaaT216216AY.5.30.072874
ORF1ab/nsp778N78NaaCaaT204204AY.430.000904
ORF1ab/nsp778N78NaaCaaT184184AY.30.00183
ORF1ab/nsp778N78SaAcaGc155155B.1.617.20.000584
ORF1ab/nsp778N78NaaCaaT149149AY.440.000907
ORF1ab/nsp778N78NaaCaaT147147B.1.20.001294
ORF1ab/nsp778N78NaaCaaT114114P.10.001796
ORF1ab/nsp778N78NaaCaaT111111B.10.001017
ORF1ab/nsp778N78NaaCaaT103103AD.10.423868
ORF1ab/nsp778N78NaaCaaT9696B.1.5260.002256
ORF1ab/nsp778N78SaAcaGc9494B.1.1.70.000084
ORF1ab/nsp778N78NaaCaaT8787B.1.1600.002713
ORF1ab/nsp778N78NaaCaaT8585AY.1030.000528
ORF1ab/nsp778N78DAacGac7777All0.000015
ORF1ab/nsp778N78NaaCaaT7777B.1.10.001397
ORF1ab/nsp778N78SaAcaGc7273B.10.000659
ORF1ab/nsp778N78SaACaGT173B.10.000009
ORF1ab/nsp778N78NaaCaaT7272AY.390.001779
ORF1ab/nsp778N78SaAcaGc7272AY.430.000319
ORF1ab/nsp778N78NaaCaaT6969B.1.4410.663462
ORF1ab/nsp778N78NaaCaaT6969P.1.160.025814
ORF1ab/nsp778N78NaaCaaT6767AY.1000.003082
ORF1ab/nsp778N78NaaCaaT6767B.1.3510.001992
ORF1ab/nsp778N78NaaCaaT6161AY.980.004819
ORF1ab/nsp778N78NaaCaaT6060AY.250.000361
ORF1ab/nsp778N78NaaCaaT5959AY.3.10.00503
ORF1ab/nsp778N78NaaCaaT5959B.1.177.770.042847
ORF1ab/nsp778N78SaAcaGc5656AY.1030.000348
ORF1ab/nsp778N78SaAcaGc5656AY.40.000087
ORF1ab/nsp778N78NaaCaaT5353B.1.6210.004692
ORF1ab/nsp778N78NaaCaaT4444AY.90.002974
ORF1ab/nsp778N78NaaCaaT4141B.1.5960.003573
ORF1ab/nsp778N78NaaCaaT3838B.1.1770.0005
ORF1ab/nsp778N78NaaCaaT3737C.40.37
ORF1ab/nsp778N78NaaCaaT3434B.1.1.2980.02931
ORF1ab/nsp778N78NaaCaaT3333AY.200.001283
ORF1ab/nsp778N78NaaCaaT3333AY.650.017591
ORF1ab/nsp778N78SaAcaGc3333B.1.177.370.891892
ORF1ab/nsp778N78SaAcaGc3232B.1.1.10.010454
ORF1ab/nsp778N78KaaCaaA1630All0.000003
ORF1ab/nsp778N78KaaCaaG1430All0.000003
ORF1ab/nsp778N78SaAcaGc3030AY.250.00018
ORF1ab/nsp778N78SaAcaGc3030AY.440.000183
ORF1ab/nsp778N78NaaCaaT3030B.1.1.2970.067114
ORF1ab/nsp778N78NaaCaaT2929AY.230.002023
ORF1ab/nsp778N78SaAcaGc2929B.1.1770.000382
ORF1ab/nsp778N78NaaCaaT2828B.1.36.290.014485
ORF1ab/nsp778N78NaaCaaT2626AY.1160.007456
ORF1ab/nsp778N78SaAcaGc2626B.1.20.000229
ORF1ab/nsp778N78NaaCaaT2525AY.1190.000883
ORF1ab/nsp778N78NaaCaaT2222AY.1170.001859
ORF1ab/nsp778N78NaaCaaT2020AY.460.002082
ORF1ab/nsp778N78NaaCaaT2020B.1.258.170.002079
ORF1ab/nsp778N78DAacGac1919B.1.1.2160.016919
ORF1ab/nsp778N78NaaCaaT1919B.1.1.5190.000755
ORF1ab/nsp778N78NaaCaaT1919B.1.36.80.019
ORF1ab/nsp778N78NaaCaaT1818B.1.2060.014682
ORF1ab/nsp778N78NaaCaaT1818P.1.150.004182
ORF1ab/nsp778N78NaaCaaT1818P.20.003359
ORF1ab/nsp778N78NaaCaaT1717AY.50.000351
ORF1ab/nsp778N78NaaCaaT1717P.1.40.016602
ORF1ab/nsp778N78NaaCaaT1616AY.260.000453
ORF1ab/nsp778N78NaaCaaT1616AY.290.000252
ORF1ab/nsp778N78NaaCaaT1616AY.840.006999
ORF1ab/nsp778N78NaaCaaT1616B.1.1.4340.005577
ORF1ab/nsp778N78NaaCaaT1616B.1.2320.008598
ORF1ab/nsp778N78NaaCaaT1616B.1.2430.001113
ORF1ab/nsp778N78NaaCaaT1616B.1.2580.001065
ORF1ab/nsp778N78SaAcaGc1616B.1.4270.000808
ORF1ab/nsp778N78NaaCaaT1616B.1.5640.006814
ORF1ab/nsp778N78delAAC---1515All0.000003
ORF1ab/nsp778N78NaaCaaT1515AY.39.10.000594
ORF1ab/nsp778N78NaaCaaT1515B.1.4260.015136
ORF1ab/nsp778N78SaAcaGc1414AY.1020.000371
ORF1ab/nsp778N78NaaCaaT1414AY.330.000935
ORF1ab/nsp778N78SaAcaGc1414P.1.140.000669
ORF1ab/nsp778N78NaaCaaT1414R.10.00126
ORF1ab/nsp778N78DAacGac1313AY.40.00002
ORF1ab/nsp778N78NaaCaaT1313AY.470.000404
ORF1ab/nsp778N78NaaCaaT1313AY.610.001362
ORF1ab/nsp778N78NaaCaaT1313B.1.1.2140.000721
ORF1ab/nsp778N78SaAcaGc1313B.1.1.410.082278
ORF1ab/nsp778N78NaaCaaT1313B.1.3240.020867
ORF1ab/nsp778N78NaaCaaT1313B.1.5950.003392
ORF1ab/nsp778N78NaaCaaT1313P.1.140.000621
ORF1ab/nsp778N78NaaCaaT1313W.40.017568
ORF1ab/nsp778N78YAacTac1212All0.000002
ORF1ab/nsp778N78NaaCaaT1212AY.1130.001709
ORF1ab/nsp778N78NaaCaaT1212AY.240.005172
ORF1ab/nsp778N78SaAcaGc1212AY.460.001249
ORF1ab/nsp778N78NaaCaaT1212AY.920.003447
ORF1ab/nsp778N78NaaCaaT1111B.1.221.20.044177
ORF1ab/nsp778N78NaaCaaT1111B.1.3110.00302
ORF1ab/nsp778N78NaaCaaT1010AY.1200.000372
ORF1ab/nsp778N78SaAcaGc1010AY.630.003868
ORF1ab/nsp778N78NaaCaaT1010B.1.177.860.001835
ORF1ab/nsp778N78NaaCaaT99AY.300.003562
ORF1ab/nsp778N78NaaCaaT99AY.410.002646
ORF1ab/nsp778N78NaaCaaT99AY.60.00037
ORF1ab/nsp778N78NaaCaaT99B.1.1.2410.018634
ORF1ab/nsp778N78NaaCaaT99B.1.1.250.005117
ORF1ab/nsp778N78NaaCaaT99B.1.177.210.000688
ORF1ab/nsp778N78NaaCaaT99C.370.001045
ORF1ab/nsp778N78HAacCac88All0.000002
ORF1ab/nsp778N78SaAcaGc88AY.390.000198
ORF1ab/nsp778N78NaaCaaT88B.1.1.2220.001632
ORF1ab/nsp778N78NaaCaaT88B.1.1.280.00249
ORF1ab/nsp778N78NaaCaaT88B.1.1.3710.083333
ORF1ab/nsp778N78NaaCaaT88B.1.177.830.011852
ORF1ab/nsp778N78NaaCaaT88B.1.2210.000568
ORF1ab/nsp778N78NaaCaaT88B.1.5770.005498
ORF1ab/nsp778N78DAacGac77AY.39.10.000277
ORF1ab/nsp778N78SaAcaGc77AY.4.40.002864
ORF1ab/nsp778N78NaaCaaT77AY.400.00675
ORF1ab/nsp778N78NaaCaaT77AY.420.000282
ORF1ab/nsp778N78NaaCaaT77AY.450.000852
ORF1ab/nsp778N78NaaCaaT77AY.750.000392
ORF1ab/nsp778N78NaaCaaT77AY.9.10.000586
ORF1ab/nsp778N78SaAcaGc77B.1.1.2220.001428
ORF1ab/nsp778N78NaaCaaT77B.1.2340.000924
ORF1ab/nsp778N78NaaCaaT77B.1.360.001021
ORF1ab/nsp778N78SaAcaGc77B.1.4290.000165
ORF1ab/nsp778N78NaaCaaT66AY.190.006842
ORF1ab/nsp778N78SaAcaGc66AY.200.000233
ORF1ab/nsp778N78SaAcaGc66AY.260.00017
ORF1ab/nsp778N78NaaCaaT66AY.9.20.00022
ORF1ab/nsp778N78NaaCaaT66B.1.1.10.00196
ORF1ab/nsp778N78NaaCaaT66B.1.1.4160.00543
ORF1ab/nsp778N78NaaCaaT66B.1.1390.004399
ORF1ab/nsp778N78NaaCaaT66B.1.2400.001293
ORF1ab/nsp778N78NaaCaaT66B.1.36.380.009852
ORF1ab/nsp778N78NaaCaaT66B.1.4390.035503
ORF1ab/nsp778N78NaaCaaT66B.1.5510.007742
ORF1ab/nsp778N78NaaCaaT66B.1.5880.00546
ORF1ab/nsp778N78NaaCaaT55AY.1180.000313
ORF1ab/nsp778N78NaaCaaT55AY.1210.000677
ORF1ab/nsp778N78DAacGac55AY.390.000124
ORF1ab/nsp778N78NaaCaaT55AY.4.20.000108
ORF1ab/nsp778N78DAacGac55AY.5.40.001384
ORF1ab/nsp778N78SaAcaGc55AY.610.000524
ORF1ab/nsp778N78NaaCaaT55AY.670.002321
ORF1ab/nsp778N78NaaCaaT55AY.7.20.002796
ORF1ab/nsp778N78DAacGac55AY.980.000395
ORF1ab/nsp778N78SaAcaGc55B.1.10.000091
ORF1ab/nsp778N78NaaCaaT55B.1.1.3060.002192
ORF1ab/nsp778N78KaaCaaA55B.1.1.4260.178571
ORF1ab/nsp778N78NaaCaaT55B.1.177.70.000824
ORF1ab/nsp778N78NaaCaaT55B.1.177.730.002831
ORF1ab/nsp778N78NaaCaaT55B.1.2230.013889
ORF1ab/nsp778N78SaAcaGc55B.1.36.80.005
ORF1ab/nsp778N78NaaCaaT55B.1.416.10.007812
ORF1ab/nsp778N78SaAcaGc55B.1.5750.001517
ORF1ab/nsp778N78NaaCaaT55B.1.6030.053191
ORF1ab/nsp778N78NaaCaaT55B.1.6370.000365
ORF1ab/nsp778N78NaaCaaT55C.36.30.002836
ORF1ab/nsp778N78KaaCaaA240.111111
ORF1ab/nsp778N78KaaCaaG240.111111
ORF1ab/nsp778N78IaAcaTc34All0.000001
ORF1ab/nsp778N78IaACaTA14All0
ORF1ab/nsp778N78SaAcaGc44AY.1000.000184
ORF1ab/nsp778N78NaaCaaT44AY.1140.000924
ORF1ab/nsp778N78SaAcaGc44AY.1210.000541
ORF1ab/nsp778N78NaaCaaT44AY.270.000259
ORF1ab/nsp778N78SaAcaGc44AY.330.000267
ORF1ab/nsp778N78NaaCaaT44AY.340.000388
ORF1ab/nsp778N78NaaCaaT44AY.360.000593
ORF1ab/nsp778N78NaaCaaT44AY.4.50.00043
ORF1ab/nsp778N78SaAcaGc44AY.730.002661
ORF1ab/nsp778N78NaaCaaT44AY.790.004843
ORF1ab/nsp778N78SaAcaGc44AY.9.20.000147
ORF1ab/nsp778N78NaaCaaT44AY.910.002922
ORF1ab/nsp778N78NaaCaaT44B0.000511
ORF1ab/nsp778N78NaaCaaT44B.1.1.1860.013746
ORF1ab/nsp778N78SaAcaGc44B.1.1.280.001245
ORF1ab/nsp778N78NaaCaaT44B.1.1.4200.004024
ORF1ab/nsp778N78NaaCaaT44B.1.1.5280.019231
ORF1ab/nsp778N78delAAC---44B.1.1.70.000004
ORF1ab/nsp778N78KaaCaaG44B.1.1.70.000004
ORF1ab/nsp778N78DAacGac44B.1.1600.000125
ORF1ab/nsp778N78SaAcaGc44B.1.1600.000125
ORF1ab/nsp778N78SaAcaGc44B.1.160.100.032258
ORF1ab/nsp778N78SaAcaGc44B.1.177.170.003284
ORF1ab/nsp778N78NaaCaaT44B.1.177.40.000844
ORF1ab/nsp778N78SaAcaGc44B.1.2390.004884
ORF1ab/nsp778N78SaAcaGc44B.1.2580.000266
ORF1ab/nsp778N78NaaCaaT44B.1.351.20.00121
ORF1ab/nsp778N78NaaCaaT44B.1.4110.014815
ORF1ab/nsp778N78NaaCaaT44B.1.4130.017021
ORF1ab/nsp778N78NaaCaaT44B.1.5250.000453
ORF1ab/nsp778N78SaAcaGc44B.1.6050.02381
ORF1ab/nsp778N78DAacGac44B.1.617.20.000015
ORF1ab/nsp778N78NaaCaaT44B.1.621.10.002023
ORF1ab/nsp778N78SaAcaGc44B.1.930.003735
ORF1ab/nsp778N78NaaCaaT44C.180.010363
ORF1ab/nsp778N78NaaCaaT44D.20.0003
ORF1ab/nsp778N78NaaCaaT44P.1.100.001078
ORF1ab/nsp778N78TaAcaCc23All0
ORF1ab/nsp778N78TaACaCA13All0
ORF1ab/nsp778N78NaaCaaT33AY.1100.000338
ORF1ab/nsp778N78NaaCaaT33AY.130.000483
ORF1ab/nsp778N78SaAcaGc33AY.140.000264
ORF1ab/nsp778N78NaaCaaT33AY.140.000264
ORF1ab/nsp778N78NaaCaaT33AY.160.001139
ORF1ab/nsp778N78NaaCaaT33AY.20.001068
ORF1ab/nsp778N78HAacCac33AY.290.000047
ORF1ab/nsp778N78SaAcaGc33AY.4.2.10.000447
ORF1ab/nsp778N78NaaCaaT33AY.46.20.001906
ORF1ab/nsp778N78NaaCaaT33AY.46.60.000217
ORF1ab/nsp778N78NaaCaaT33AY.480.001395
ORF1ab/nsp778N78NaaCaaT33AY.5.40.00083
ORF1ab/nsp778N78SaAcaGc33AY.570.001969
ORF1ab/nsp778N78NaaCaaT33AY.580.002722
ORF1ab/nsp778N78NaaCaaT33AY.690.00056
ORF1ab/nsp778N78SaAcaGc33AY.740.000347
ORF1ab/nsp778N78NaaCaaT33AY.75.10.000541
ORF1ab/nsp778N78KaaCaaA33B.10.000027
ORF1ab/nsp778N78DAacGac33B.1.10.000054
ORF1ab/nsp778N78SaAcaGc33B.1.1.1130.020979
ORF1ab/nsp778N78NaaCaaT33B.1.1.1290.027523
ORF1ab/nsp778N78SaAcaGc33B.1.1.1570.00274
ORF1ab/nsp778N78NaaCaaT33B.1.1.2630.004673
ORF1ab/nsp778N78NaaCaaT33B.1.1.3160.002775
ORF1ab/nsp778N78SaAcaGc33B.1.1.3170.001235
ORF1ab/nsp778N78NaaCaaT33B.1.1.370.000579
ORF1ab/nsp778N78NaaCaaT33B.1.1.830.00813
ORF1ab/nsp778N78NaaCaaT33B.1.1280.001906
ORF1ab/nsp778N78SaAcaGc33B.1.177.860.00055
ORF1ab/nsp778N78SaAcaGc33B.1.360.000438
ORF1ab/nsp778N78NaaCaaT33B.1.36.170.001482
ORF1ab/nsp778N78NaaCaaT33B.1.4270.000151
ORF1ab/nsp778N78SaAcaGc33B.1.438.10.000322
ORF1ab/nsp778N78KaaCaaG23B.1.5960.000174
ORF1ab/nsp778N78KaaCaaA13B.1.5960.000087
ORF1ab/nsp778N78SaAcaGc33B.1.6090.001438
ORF1ab/nsp778N78SaAcaGc33C.370.000348
ORF1ab/nsp778N78SaAcaGc33P.10.000047
ORF1ab/nsp778N78SaAcaGc33Q.30.000435
ORF1ab/nsp778N78NaaCaaT33Q.80.000495
ORF1ab/nsp778N78LAACTTA220.111111
ORF1ab/nsp778N78delAAC---220.111111
ORF1ab/nsp778N78NaaCaaT22A0.000774
ORF1ab/nsp778N78NaaCaaT22A.10.000564
ORF1ab/nsp778N78NaaCaaT22A.2.50.000998
ORF1ab/nsp778N78NaaCaaT22A.50.003846
ORF1ab/nsp778N78NaaCaaT22AD.20.000438
ORF1ab/nsp778N78LAACTTA22All0
ORF1ab/nsp778N78del1Aac-ac22All0
ORF1ab/nsp778N78NaaCaaT22AY.10.000791
ORF1ab/nsp778N78NaaCaaT22AY.1050.001286
ORF1ab/nsp778N78SaAcaGc22AY.1110.000366
ORF1ab/nsp778N78NaaCaaT22AY.1110.000366
ORF1ab/nsp778N78SaAcaGc22AY.1170.000169
ORF1ab/nsp778N78SaAcaGc22AY.1180.000125
ORF1ab/nsp778N78SaAcaGc22AY.270.000129
ORF1ab/nsp778N78SaAcaGc22AY.290.000032
ORF1ab/nsp778N78HAacCac22AY.360.000296
ORF1ab/nsp778N78NaaCaaT22AY.380.000999
ORF1ab/nsp778N78NaaCaaT22AY.46.50.000397
ORF1ab/nsp778N78KaaCaaG22AY.470.000062
ORF1ab/nsp778N78SaAcaGc22AY.50.000041
ORF1ab/nsp778N78NaaCaaT22AY.530.000575
ORF1ab/nsp778N78NaaCaaT22AY.540.000191
ORF1ab/nsp778N78NaaCaaT22AY.550.001835
ORF1ab/nsp778N78NaaCaaT22AY.560.00321
ORF1ab/nsp778N78SaAcaGc22AY.590.001059
ORF1ab/nsp778N78SaAcaGc22AY.60.000082
ORF1ab/nsp778N78NaaCaaT22AY.70.000392
ORF1ab/nsp778N78NaaCaaT22AY.740.000231
ORF1ab/nsp778N78NaaCaaT22AY.770.002255
ORF1ab/nsp778N78NaaCaaT22AY.810.003984
ORF1ab/nsp778N78NaaCaaT22AY.98.10.000097
ORF1ab/nsp778N78delAAC---22B.10.000018
ORF1ab/nsp778N78KaaCaaA22B.1.10.000036
ORF1ab/nsp778N78YAacTac22B.1.10.000036
ORF1ab/nsp778N78NaaCaaT22B.1.1.1680.052632
ORF1ab/nsp778N78NaaCaaT22B.1.1.3170.000823
ORF1ab/nsp778N78NaaCaaT22B.1.1.330.000842
ORF1ab/nsp778N78NaaCaaT22B.1.1.3650.011173
ORF1ab/nsp778N78NaaCaaT22B.1.1.4590.030769
ORF1ab/nsp778N78NaaCaaT22B.1.1.5070.017391
ORF1ab/nsp778N78NaaCaaT22B.1.1110.00235
ORF1ab/nsp778N78DAacGac22B.1.1770.000026
ORF1ab/nsp778N78NaaCaaT22B.1.177.100.001756
ORF1ab/nsp778N78SaAcaGc22B.1.177.560.001335
ORF1ab/nsp778N78YAacTac22B.1.20.000018
ORF1ab/nsp778N78SaAcaGc22B.1.214.10.04
ORF1ab/nsp778N78SaAcaGc22B.1.2230.005556
ORF1ab/nsp778N78SaAcaGc22B.1.2340.000264
ORF1ab/nsp778N78NaaCaaT22B.1.2360.004107
ORF1ab/nsp778N78SaAcaGc22B.1.2430.000139
ORF1ab/nsp778N78NaaCaaT22B.1.3200.002491
ORF1ab/nsp778N78NaaCaaT22B.1.36.10.002281
ORF1ab/nsp778N78NaaCaaT22B.1.3770.009132
ORF1ab/nsp778N78SaAcaGc22B.1.3890.002004
ORF1ab/nsp778N78NaaCaaT22B.1.3890.002004
ORF1ab/nsp778N78SaAcaGc22B.1.3960.001411
ORF1ab/nsp778N78DAacGac22B.1.4270.000101
ORF1ab/nsp778N78NaaCaaT22B.1.4320.022472
ORF1ab/nsp778N78NaaCaaT22B.1.4700.002809
ORF1ab/nsp778N78NaaCaaT22B.1.4800.004975
ORF1ab/nsp778N78delAAC---22B.1.5250.000226
ORF1ab/nsp778N78NaaCaaT22B.1.5330.019231
ORF1ab/nsp778N78SaAcaGc22B.1.5580.009132
ORF1ab/nsp778N78NaaCaaT22B.1.6090.000959
ORF1ab/nsp778N78KaaCaaA22B.1.617.20.000008
ORF1ab/nsp778N78NaaCaaT22C.360.001821
ORF1ab/nsp778N78NaaCaaT22P.1.120.000968
ORF1ab/nsp778N78HAacCac110.055556
ORF1ab/nsp778N78QAaCCaA110.055556
ORF1ab/nsp778N78SaAcaGc11A0.000387
ORF1ab/nsp778N78SaAcaGc11A.20.000662
ORF1ab/nsp778N78NaaCaaT11AJ.10.045455
ORF1ab/nsp778N78QAaCCaA11All0
ORF1ab/nsp778N78del2AAC--T11All0
ORF1ab/nsp778N78NaaCaaT11AW.10.003049
ORF1ab/nsp778N78NaaCaaT11AY.1010.00049
ORF1ab/nsp778N78DAacGac11AY.1020.000027
ORF1ab/nsp778N78NaaCaaT11AY.1040.001984
ORF1ab/nsp778N78SaAcaGc11AY.1050.000643
ORF1ab/nsp778N78NaaCaaT11AY.1090.00074
ORF1ab/nsp778N78SaAcaGc11AY.1130.000142
ORF1ab/nsp778N78SaAcaGc11AY.1160.000287
ORF1ab/nsp778N78DAacGac11AY.1200.000037
ORF1ab/nsp778N78SaAcaGc11AY.1200.000037
ORF1ab/nsp778N78NaaCaaT11AY.120.10.000321
ORF1ab/nsp778N78NaaCaaT11AY.16.10.00047
ORF1ab/nsp778N78YAacTac11AY.230.00007
ORF1ab/nsp778N78SaAcaGc11AY.230.00007
ORF1ab/nsp778N78delAAC---11AY.250.000006
ORF1ab/nsp778N78NaaCaaT11AY.280.00189
ORF1ab/nsp778N78NaaCaaT11AY.29.10.000221
ORF1ab/nsp778N78DAacGac11AY.30.00001
ORF1ab/nsp778N78NaaCaaT11AY.34.10.00051
ORF1ab/nsp778N78NaaCaaT11AY.350.000233
ORF1ab/nsp778N78KaaCaaA11AY.4.20.000022
ORF1ab/nsp778N78delAAC---11AY.420.00004
ORF1ab/nsp778N78HAacCac11AY.420.00004
ORF1ab/nsp778N78DAacGac11AY.430.000004
ORF1ab/nsp778N78delAAC---11AY.430.000004
ORF1ab/nsp778N78KaaCaaG11AY.430.000004
ORF1ab/nsp778N78delAAC---11AY.440.000006
ORF1ab/nsp778N78TaACaCA11AY.440.000006
ORF1ab/nsp778N78YAacTac11AY.440.000006
ORF1ab/nsp778N78NaaCaaT11AY.46.40.000165
ORF1ab/nsp778N78SaAcaGc11AY.470.000031
ORF1ab/nsp778N78TaAcaCc11AY.50.000021
ORF1ab/nsp778N78SaAcaGc11AY.5.40.000277
ORF1ab/nsp778N78NaaCaaT11AY.520.000814
ORF1ab/nsp778N78NaaCaaT11AY.570.000656
ORF1ab/nsp778N78NaaCaaT11AY.590.00053
ORF1ab/nsp778N78SaAcaGc11AY.680.000274
ORF1ab/nsp778N78NaaCaaT11AY.680.000274
ORF1ab/nsp778N78YAacTac11AY.7.10.000113
ORF1ab/nsp778N78NaaCaaT11AY.730.000665
ORF1ab/nsp778N78SaAcaGc11AY.75.10.00018
ORF1ab/nsp778N78NaaCaaT11AY.820.001357
ORF1ab/nsp778N78NaaCaaT11AY.850.000427
ORF1ab/nsp778N78NaaCaaT11AY.880.000884
ORF1ab/nsp778N78NaaCaaT11AY.890.004902
ORF1ab/nsp778N78SaAcaGc11AY.90.000068
ORF1ab/nsp778N78NaaCaaT11AY.940.000443
ORF1ab/nsp778N78NaaCaaT11AY.950.000761
ORF1ab/nsp778N78YAacTac11AY.950.000761
ORF1ab/nsp778N78NaaCaaT11AY.970.001701
ORF1ab/nsp778N78SaAcaGc11AY.98.10.000048
ORF1ab/nsp778N78NaaCaaT11AY.99.10.001553
ORF1ab/nsp778N78NaaCaaT11AY.99.20.000092
ORF1ab/nsp778N78NaaCaaT11AZ.20.000821
ORF1ab/nsp778N78IaAcaTc11B0.000128
ORF1ab/nsp778N78YAacTac11B.10.000009
ORF1ab/nsp778N78NaaCaaT11B.1.1.100.001115
ORF1ab/nsp778N78SaAcaGc11B.1.1.1290.009174
ORF1ab/nsp778N78NaaCaaT11B.1.1.150.013514
ORF1ab/nsp778N78NaaCaaT11B.1.1.1530.001095
ORF1ab/nsp778N78NaaCaaT11B.1.1.1570.000913
ORF1ab/nsp778N78NaaCaaT11B.1.1.1700.001247
ORF1ab/nsp778N78NaaCaaT11B.1.1.1760.000439
ORF1ab/nsp778N78SaAcaGc11B.1.1.2140.000055
ORF1ab/nsp778N78NaaCaaT11B.1.1.2160.00089
ORF1ab/nsp778N78NaaCaaT11B.1.1.2200.001859
ORF1ab/nsp778N78NaaCaaT11B.1.1.2770.000759
ORF1ab/nsp778N78NaaCaaT11B.1.1.2800.003086
ORF1ab/nsp778N78NaaCaaT11B.1.1.2910.000742
ORF1ab/nsp778N78SaAcaGc11B.1.1.2940.001266
ORF1ab/nsp778N78NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp778N78NaaCaaT11B.1.1.3180.000302
ORF1ab/nsp778N78SaAcaGc11B.1.1.3180.000302
ORF1ab/nsp778N78NaaCaaT11B.1.1.3220.008772
ORF1ab/nsp778N78SaAcaGc11B.1.1.330.000421
ORF1ab/nsp778N78SaAcaGc11B.1.1.3470.018182
ORF1ab/nsp778N78NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp778N78NaaCaaT11B.1.1.390.00051
ORF1ab/nsp778N78DAacGac11B.1.1.440.00241
ORF1ab/nsp778N78SaAcaGc11B.1.1.4480.002033
ORF1ab/nsp778N78DAacGac11B.1.1.4480.002033
ORF1ab/nsp778N78NaaCaaT11B.1.1.460.004367
ORF1ab/nsp778N78del1Aac-ac11B.1.1.4800.025
ORF1ab/nsp778N78SaAcaGc11B.1.1.4860.001577
ORF1ab/nsp778N78SaAcaGc11B.1.1.5170.006803
ORF1ab/nsp778N78NaaCaaT11B.1.1.5210.005348
ORF1ab/nsp778N78HAacCac11B.1.1.70.000001
ORF1ab/nsp778N78IaAcaTc11B.1.1.70.000001
ORF1ab/nsp778N78TaAcaCc11B.1.1390.000733
ORF1ab/nsp778N78NaaCaaT11B.1.1570.002985
ORF1ab/nsp778N78NaaCaaT11B.1.160.300.002976
ORF1ab/nsp778N78NaaCaaT11B.1.160.320.004292
ORF1ab/nsp778N78NaaCaaT11B.1.1620.005025
ORF1ab/nsp778N78SaAcaGc11B.1.1700.00431
ORF1ab/nsp778N78KaaCaaG11B.1.177.330.001645
ORF1ab/nsp778N78SaAcaGc11B.1.177.350.000691
ORF1ab/nsp778N78NaaCaaT11B.1.177.50.001242
ORF1ab/nsp778N78NaaCaaT11B.1.177.600.000218
ORF1ab/nsp778N78NaaCaaT11B.1.1820.007246
ORF1ab/nsp778N78NaaCaaT11B.1.1890.004292
ORF1ab/nsp778N78NaaCaaT11B.1.1950.005025
ORF1ab/nsp778N78IaACaTA11B.1.20.000009
ORF1ab/nsp778N78KaaCaaG11B.1.20.000009
ORF1ab/nsp778N78DAacGac11B.1.20.000009
ORF1ab/nsp778N78del2AAC--T11B.1.20.000009
ORF1ab/nsp778N78SaAcaGc11B.1.2210.000071
ORF1ab/nsp778N78NaaCaaT11B.1.221.30.000833
ORF1ab/nsp778N78YAacTac11B.1.2320.000537
ORF1ab/nsp778N78NaaCaaT11B.1.2390.001221
ORF1ab/nsp778N78NaaCaaT11B.1.243.10.022222
ORF1ab/nsp778N78NaaCaaT11B.1.258.190.007092
ORF1ab/nsp778N78NaaCaaT11B.1.258.30.001675
ORF1ab/nsp778N78SaAcaGc11B.1.3150.006061
ORF1ab/nsp778N78NaaCaaT11B.1.3280.03125
ORF1ab/nsp778N78SaAcaGc11B.1.3510.00003
ORF1ab/nsp778N78NaaCaaT11B.1.36.190.009259
ORF1ab/nsp778N78NaaCaaT11B.1.36.210.00216
ORF1ab/nsp778N78NaaCaaT11B.1.36.260.002857
ORF1ab/nsp778N78NaaCaaT11B.1.36.360.000602
ORF1ab/nsp778N78YAacTac11B.1.36.80.001
ORF1ab/nsp778N78NaaCaaT11B.1.3690.000285
ORF1ab/nsp778N78NaaCaaT11B.1.390.003906
ORF1ab/nsp778N78SaAcaGc11B.1.3910.001127
ORF1ab/nsp778N78NaaCaaT11B.1.4080.00369
ORF1ab/nsp778N78SaAcaGc11B.1.4080.00369
ORF1ab/nsp778N78NaaCaaT11B.1.4620.007246
ORF1ab/nsp778N78NaaCaaT11B.1.466.20.000391
ORF1ab/nsp778N78SaAcaGc11B.1.4680.005714
ORF1ab/nsp778N78NaaCaaT11B.1.4710.002732
ORF1ab/nsp778N78NaaCaaT11B.1.4990.00105
ORF1ab/nsp778N78SaAcaGc11B.1.5030.002488
ORF1ab/nsp778N78NaaCaaT11B.1.5240.001406
ORF1ab/nsp778N78SaAcaGc11B.1.5260.000024
ORF1ab/nsp778N78NaaCaaT11B.1.5270.003704
ORF1ab/nsp778N78NaaCaaT11B.1.5610.000397
ORF1ab/nsp778N78del1Aac-ac11B.1.5640.000426
ORF1ab/nsp778N78NaaCaaT11B.1.564.10.001577
ORF1ab/nsp778N78NaaCaaT11B.1.5650.00081
ORF1ab/nsp778N78SaAcaGc11B.1.5650.00081
ORF1ab/nsp778N78NaaCaaT11B.1.5680.001111
ORF1ab/nsp778N78NaaCaaT11B.1.5760.000907
ORF1ab/nsp778N78NaaCaaT11B.1.5820.000491
ORF1ab/nsp778N78SaAcaGc11B.1.5950.000261
ORF1ab/nsp778N78SaAcaGc11B.1.5960.000087
ORF1ab/nsp778N78SaAcaGc11B.1.6100.003546
ORF1ab/nsp778N78NaaCaaT11B.1.6120.002653
ORF1ab/nsp778N78NaaCaaT11B.1.617.10.000129
ORF1ab/nsp778N78YAacTac11B.1.6210.000089
ORF1ab/nsp778N78SaAcaGc11B.1.6210.000089
ORF1ab/nsp778N78NaaCaaT11B.1.6230.000536
ORF1ab/nsp778N78NaaCaaT11B.1.80.001972
ORF1ab/nsp778N78NaaCaaT11B.1.910.002075
ORF1ab/nsp778N78SaAcaGc11B.30.000831
ORF1ab/nsp778N78KaaCaaG11B.610.005747
ORF1ab/nsp778N78NaaCaaT11C.140.004329
ORF1ab/nsp778N78SaAcaGc11C.160.00106
ORF1ab/nsp778N78DAacGac11C.170.055556
ORF1ab/nsp778N78IaAcaTc11D.20.000075
ORF1ab/nsp778N78delAAC---11N.40.004255
ORF1ab/nsp778N78NaaCaaT11N.60.007092
ORF1ab/nsp778N78NaaCaaT11P.1.130.000898
ORF1ab/nsp778N78NaaCaaT11P.1.170.000162
ORF1ab/nsp778N78NaaCaaT11P.60.003145
ORF1ab/nsp778N78SaAcaGc11R.10.00009