CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 77

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp777D77DD3936DsyngaCgaT2640126401112071-12073
ORF1ab/nsp777D77ND3936NnonsynGacAac560956050.99928712071-12073
ORF1ab/nsp777D77ND3936NnonsynGaCAaT560940.0007131412071-12073
ORF1ab/nsp777D77YD3936YnonsynGacTac4374360.99771212071-12073
ORF1ab/nsp777D77YD3936YnonsynGaCTaT43710.0022883312071-12073
ORF1ab/nsp777D77GD3936GnonsyngAcgGc169169112071-12073
ORF1ab/nsp777D77AD3936AnonsyngAcgCc1717112071-12073
ORF1ab/nsp777D77delD3936deldelGAC---1212112071-12073
ORF1ab/nsp777D77ED3936EnonsyngaCgaA88112071-12073
ORF1ab/nsp777D77HD3936HnonsynGacCac66112071-12073
ORF1ab/nsp777D77VD3936VnonsyngACgTT420.512071-12073
ORF1ab/nsp777D77VD3936VnonsyngAcgTc420.512071-12073
ORF1ab/nsp777D77RD3936RnonsynGACAGG22112071-12073
ORF1ab/nsp777D77SD3936SnonsynGAcAGc22112071-12073
ORF1ab/nsp777D77KD3936KnonsynGaCAaA22112071-12073
ORF1ab/nsp777D77del2D3936del2delgACg--11112071-12073
ORF1ab/nsp777D77TD3936TnonsynGACACA11112071-12073

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp777D77DgaCgaT2640126401All0.00505
ORF1ab/nsp777D77DgaCgaT2204022040AY.420.886672
ORF1ab/nsp777D77NGacAac56055609All0.001072
ORF1ab/nsp777D77NGaCAaT45609All0.000001
ORF1ab/nsp777D77NGacAac32103210AY.116.10.999689
ORF1ab/nsp777D77NGacAac904904R.10.081368
ORF1ab/nsp777D77DgaCgaT800800AY.60.032903
ORF1ab/nsp777D77NGacAac514514B.1.1.70.00046
ORF1ab/nsp777D77DgaCgaT464464B.1.1.70.000415
ORF1ab/nsp777D77YGacTac436437All0.000083
ORF1ab/nsp777D77YGaCTaT1437All0
ORF1ab/nsp777D77DgaCgaT296296B.1.617.20.001115
ORF1ab/nsp777D77DgaCgaT287287B.1.2210.020386
ORF1ab/nsp777D77DgaCgaT240240B.10.002198
ORF1ab/nsp777D77DgaCgaT221221AY.430.000979
ORF1ab/nsp777D77DgaCgaT201201B.1.10.003646
ORF1ab/nsp777D77YGacTac200200AY.1030.001242
ORF1ab/nsp777D77DgaCgaT189189P.20.035274
ORF1ab/nsp777D77GgAcgGc169169All0.000032
ORF1ab/nsp777D77NGacAac157157AY.460.016341
ORF1ab/nsp777D77NGacAac154154B.1.6370.011253
ORF1ab/nsp777D77DgaCgaT152152B.1.20.001338
ORF1ab/nsp777D77DgaCgaT141141AY.1030.000875
ORF1ab/nsp777D77NGacAac120120AY.40.000187
ORF1ab/nsp777D77GgAcgGc9292B.10.000843
ORF1ab/nsp777D77DgaCgaT8989AY.440.000542
ORF1ab/nsp777D77DgaCgaT8989B.1.1770.001172
ORF1ab/nsp777D77DgaCgaT7878B.1.5260.001833
ORF1ab/nsp777D77DgaCgaT7171B.1.2430.004941
ORF1ab/nsp777D77DgaCgaT7070B.1.3510.002081
ORF1ab/nsp777D77YGacTac6969B.1.20.000608
ORF1ab/nsp777D77DgaCgaT6464B.1.1.5260.22695
ORF1ab/nsp777D77DgaCgaT5151AY.750.002857
ORF1ab/nsp777D77DgaCgaT4848AY.39.10.001901
ORF1ab/nsp777D77GgAcgGc4747B.1.4290.001106
ORF1ab/nsp777D77NGacAac4747B.1.617.20.000177
ORF1ab/nsp777D77DgaCgaT4040AY.250.000241
ORF1ab/nsp777D77DgaCgaT3838Q.20.023313
ORF1ab/nsp777D77NGacAac3737B.1.177.540.022438
ORF1ab/nsp777D77DgaCgaT3434B.1.2400.007329
ORF1ab/nsp777D77DgaCgaT3434P.10.000536
ORF1ab/nsp777D77NGacAac3333B.1.1.5250.180328
ORF1ab/nsp777D77NGacAac2929AY.230.002023
ORF1ab/nsp777D77DgaCgaT2929AY.40.000045
ORF1ab/nsp777D77YGacTac2828AY.40.000044
ORF1ab/nsp777D77NGacAac2828B.1.1.1010.28
ORF1ab/nsp777D77DgaCgaT2525AY.1200.000929
ORF1ab/nsp777D77NGacAac2525B.1.20.00022
ORF1ab/nsp777D77NGacAac2424AY.540.002288
ORF1ab/nsp777D77DgaCgaT2424B.1.3670.019017
ORF1ab/nsp777D77DgaCgaT2424B.1.6180.096774
ORF1ab/nsp777D77DgaCgaT2323B.1.2410.018669
ORF1ab/nsp777D77NGacAac2020AY.430.000089
ORF1ab/nsp777D77DgaCgaT1919AY.260.000538
ORF1ab/nsp777D77DgaCgaT1919B.1.2580.001264
ORF1ab/nsp777D77DgaCgaT1818B.1.1600.000561
ORF1ab/nsp777D77NGacAac1818P.10.000284
ORF1ab/nsp777D77AgAcgCc1717All0.000003
ORF1ab/nsp777D77DgaCgaT1717AY.4.20.000369
ORF1ab/nsp777D77NGacAac1717AY.440.000103
ORF1ab/nsp777D77DgaCgaT1717AY.470.000529
ORF1ab/nsp777D77YGacTac1717B.1.617.20.000064
ORF1ab/nsp777D77DgaCgaT1515D.41
ORF1ab/nsp777D77DgaCgaT1515P.1.150.003485
ORF1ab/nsp777D77DgaCgaT1414B.1.3610.018041
ORF1ab/nsp777D77DgaCgaT1313A.2.50.006487
ORF1ab/nsp777D77DgaCgaT1313AY.1190.000459
ORF1ab/nsp777D77DgaCgaT1313AY.99.20.001198
ORF1ab/nsp777D77DgaCgaT1313B.1.1.460.056769
ORF1ab/nsp777D77DgaCgaT1313B.1.5950.003392
ORF1ab/nsp777D77DgaCgaT1313P.60.040881
ORF1ab/nsp777D77delGAC---1212All0.000002
ORF1ab/nsp777D77NGacAac1212AY.10.004749
ORF1ab/nsp777D77NGacAac1212AY.16.10.005639
ORF1ab/nsp777D77DgaCgaT1212AY.46.60.000866
ORF1ab/nsp777D77DgaCgaT1212AY.9.20.000441
ORF1ab/nsp777D77NGacAac1212B.10.00011
ORF1ab/nsp777D77DgaCgaT1212B.1.1.1330.101695
ORF1ab/nsp777D77DgaCgaT1212B.1.258.40.041379
ORF1ab/nsp777D77DgaCgaT1212C.370.001393
ORF1ab/nsp777D77YGacTac1111A.2.5.20.017296
ORF1ab/nsp777D77YGacTac1011B.1.1.70.000009
ORF1ab/nsp777D77YGaCTaT111B.1.1.70.000001
ORF1ab/nsp777D77DgaCgaT1111B.1.177.810.002083
ORF1ab/nsp777D77DgaCgaT1010A.20.006618
ORF1ab/nsp777D77NGacAac1010AY.1160.002868
ORF1ab/nsp777D77NGacAac1010AY.250.00006
ORF1ab/nsp777D77DgaCgaT1010AY.5.40.002767
ORF1ab/nsp777D77NGacAac1010AY.920.002873
ORF1ab/nsp777D77DgaCgaT1010B.1.1.330.004209
ORF1ab/nsp777D77NGacAac1010B.1.2340.001319
ORF1ab/nsp777D77DgaCgaT99B.1.1.3720.006198
ORF1ab/nsp777D77YGacTac99B.1.1310.078947
ORF1ab/nsp777D77YGacTac99B.1.1770.000119
ORF1ab/nsp777D77DgaCgaT99B.1.6210.000797
ORF1ab/nsp777D77DgaCgaT99D.20.000675
ORF1ab/nsp777D77DgaCgaT99P.1.70.002874
ORF1ab/nsp777D77EgaCgaA88All0.000002
ORF1ab/nsp777D77AgAcgCc88AY.250.000048
ORF1ab/nsp777D77NGacAac88AY.390.000198
ORF1ab/nsp777D77YGacTac77B.1.10.000127
ORF1ab/nsp777D77NGacAac67B.1.10.000109
ORF1ab/nsp777D77NGaCAaT17B.1.10.000018
ORF1ab/nsp777D77NGacAac77B.1.3510.000208
ORF1ab/nsp777D77YGacTac77B.1.5990.025547
ORF1ab/nsp777D77NGacAac77P.1.20.008092
ORF1ab/nsp777D77DgaCgaT66A0.002322
ORF1ab/nsp777D77HGacCac66All0.000001
ORF1ab/nsp777D77DgaCgaT66AY.1160.001721
ORF1ab/nsp777D77DgaCgaT66AY.330.000401
ORF1ab/nsp777D77DgaCgaT66AY.46.30.005602
ORF1ab/nsp777D77DgaCgaT66B.1.1.1210.014563
ORF1ab/nsp777D77DgaCgaT66B.1.3960.004234
ORF1ab/nsp777D77NGacAac66B.1.5260.000141
ORF1ab/nsp777D77NGacAac66B.1.6210.000531
ORF1ab/nsp777D77NGacAac66P.1.130.005391
ORF1ab/nsp777D77DgaCgaT55AY.1020.000133
ORF1ab/nsp777D77NGacAac55AY.1020.000133
ORF1ab/nsp777D77NGacAac55AY.200.000194
ORF1ab/nsp777D77YGacTac55AY.430.000022
ORF1ab/nsp777D77NGacAac55AY.450.000608
ORF1ab/nsp777D77DgaCgaT55AY.760.024155
ORF1ab/nsp777D77DgaCgaT55B0.000639
ORF1ab/nsp777D77GgAcgGc55B.1.10.000091
ORF1ab/nsp777D77DgaCgaT55B.1.1.2070.00591
ORF1ab/nsp777D77DgaCgaT55B.1.177.210.000382
ORF1ab/nsp777D77DgaCgaT55B.1.177.330.008224
ORF1ab/nsp777D77YGacTac55B.1.3110.001373
ORF1ab/nsp777D77DgaCgaT55B.1.617.10.000645
ORF1ab/nsp777D77NGacAac55P.1.150.001162
ORF1ab/nsp777D77delGAC---440.222222
ORF1ab/nsp777D77VgAcgTc24All0
ORF1ab/nsp777D77VgACgTT24All0
ORF1ab/nsp777D77NGacAac44AY.1030.000025
ORF1ab/nsp777D77NGacAac44AY.1170.000338
ORF1ab/nsp777D77YGacTac44AY.30.00004
ORF1ab/nsp777D77EgaCgaA44AY.420.000161
ORF1ab/nsp777D77NGacAac44B0.000511
ORF1ab/nsp777D77YGacTac44B.10.000037
ORF1ab/nsp777D77DgaCgaT44B.1.1.3180.001207
ORF1ab/nsp777D77YGacTac44B.1.1.5190.000159
ORF1ab/nsp777D77delGAC---44B.1.1.70.000004
ORF1ab/nsp777D77DgaCgaT44B.1.3690.001141
ORF1ab/nsp777D77DgaCgaT44P.1.90.019231
ORF1ab/nsp777D77GgAcgGc33AY.1210.000406
ORF1ab/nsp777D77DgaCgaT33AY.230.000209
ORF1ab/nsp777D77NGacAac33AY.290.000047
ORF1ab/nsp777D77NGacAac33AY.30.00003
ORF1ab/nsp777D77GgAcgGc33AY.40.000005
ORF1ab/nsp777D77DgaCgaT33AY.450.000365
ORF1ab/nsp777D77NGacAac33AY.470.000093
ORF1ab/nsp777D77NGacAac33AY.5.30.001012
ORF1ab/nsp777D77NGacAac33AY.750.000168
ORF1ab/nsp777D77NGacAac33B.1.1.1810.013636
ORF1ab/nsp777D77NGaCAaT33B.1.1.330.001263
ORF1ab/nsp777D77NGacAac33B.1.1.390.001529
ORF1ab/nsp777D77NGacAac33B.1.1.4480.006098
ORF1ab/nsp777D77YGacTac33B.1.1600.000094
ORF1ab/nsp777D77NGacAac33B.1.1770.00004
ORF1ab/nsp777D77DgaCgaT33B.1.351.10.115385
ORF1ab/nsp777D77DgaCgaT33B.1.5250.000339
ORF1ab/nsp777D77YGacTac33B.1.5750.00091
ORF1ab/nsp777D77DgaCgaT33B.1.5960.000261
ORF1ab/nsp777D77YGacTac33D.20.000225
ORF1ab/nsp777D77HGacCac33P.10.000047
ORF1ab/nsp777D77DgaCgaT33P.1.140.000143
ORF1ab/nsp777D77NGacAac33P.1.140.000143
ORF1ab/nsp777D77NGacAac33Q.10.000379
ORF1ab/nsp777D77NGacAac33Q.30.000435
ORF1ab/nsp777D77VgACgTT220.111111
ORF1ab/nsp777D77RGACAGG220.111111
ORF1ab/nsp777D77RGACAGG22All0
ORF1ab/nsp777D77KGaCAaA22All0
ORF1ab/nsp777D77SGAcAGc22All0
ORF1ab/nsp777D77YGacTac22AY.1000.000092
ORF1ab/nsp777D77NGacAac22AY.1130.000285
ORF1ab/nsp777D77NGacAac22AY.1140.000462
ORF1ab/nsp777D77NGacAac22AY.1190.000071
ORF1ab/nsp777D77YGacTac22AY.1200.000074
ORF1ab/nsp777D77DgaCgaT22AY.120.20.002571
ORF1ab/nsp777D77NGacAac22AY.340.000194
ORF1ab/nsp777D77YGacTac22AY.39.10.000079
ORF1ab/nsp777D77NGacAac22AY.4.20.000043
ORF1ab/nsp777D77YGacTac22AY.440.000012
ORF1ab/nsp777D77DgaCgaT22AY.460.000208
ORF1ab/nsp777D77YGacTac22AY.680.000547
ORF1ab/nsp777D77DgaCgaT22AY.800.002257
ORF1ab/nsp777D77DgaCgaT22AY.920.000575
ORF1ab/nsp777D77DgaCgaT22AY.98.10.000097
ORF1ab/nsp777D77DgaCgaT22B.1.1.100.00223
ORF1ab/nsp777D77DgaCgaT22B.1.1.2220.000408
ORF1ab/nsp777D77DgaCgaT22B.1.1.3440.021505
ORF1ab/nsp777D77NGacAac22B.1.1.3480.001592
ORF1ab/nsp777D77DgaCgaT22B.1.1.3560.017094
ORF1ab/nsp777D77NGacAac22B.1.1.4200.002012
ORF1ab/nsp777D77NGacAac22B.1.1.5190.000079
ORF1ab/nsp777D77NGacAac22B.1.1.5210.010695
ORF1ab/nsp777D77YGacTac22B.1.160.80.002577
ORF1ab/nsp777D77NGacAac22B.1.177.560.001335
ORF1ab/nsp777D77DgaCgaT22B.1.177.800.003824
ORF1ab/nsp777D77DgaCgaT22B.1.220.002635
ORF1ab/nsp777D77YGacTac22B.1.2580.000133
ORF1ab/nsp777D77DgaCgaT22B.1.36.80.002
ORF1ab/nsp777D77NGacAac22B.1.3990.003868
ORF1ab/nsp777D77DgaCgaT22B.1.4270.000101
ORF1ab/nsp777D77NGacAac22B.1.4290.000047
ORF1ab/nsp777D77GgAcgGc22B.1.617.10.000258
ORF1ab/nsp777D77DgaCgaT22B.1.6190.001742
ORF1ab/nsp777D77NGacAac22C.370.000232
ORF1ab/nsp777D77NGacAac22Q.80.00033
ORF1ab/nsp777D77EgaCgaA110.055556
ORF1ab/nsp777D77NGacAac11A.210.00277
ORF1ab/nsp777D77DgaCgaT11A.23.10.000704
ORF1ab/nsp777D77TGACACA11All0
ORF1ab/nsp777D77del2gACg--11All0
ORF1ab/nsp777D77DgaCgaT11AY.1000.000046
ORF1ab/nsp777D77YGacTac11AY.1020.000027
ORF1ab/nsp777D77NGacAac11AY.1060.000335
ORF1ab/nsp777D77NGacAac11AY.1110.000183
ORF1ab/nsp777D77NGacAac11AY.1180.000063
ORF1ab/nsp777D77GgAcgGc11AY.1200.000037
ORF1ab/nsp777D77AgAcgCc11AY.1200.000037
ORF1ab/nsp777D77NGacAac11AY.120.10.000321
ORF1ab/nsp777D77NGacAac11AY.130.000161
ORF1ab/nsp777D77YGacTac11AY.140.000088
ORF1ab/nsp777D77DgaCgaT11AY.160.00038
ORF1ab/nsp777D77YGacTac11AY.20.000356
ORF1ab/nsp777D77YGacTac11AY.200.000039
ORF1ab/nsp777D77SGAcAGc11AY.230.00007
ORF1ab/nsp777D77YGacTac11AY.23.10.000417
ORF1ab/nsp777D77YGacTac11AY.250.000006
ORF1ab/nsp777D77NGacAac11AY.260.000028
ORF1ab/nsp777D77DgaCgaT11AY.290.000016
ORF1ab/nsp777D77NGacAac11AY.3.10.000085
ORF1ab/nsp777D77NGacAac11AY.300.000396
ORF1ab/nsp777D77YGacTac11AY.320.000532
ORF1ab/nsp777D77NGacAac11AY.320.000532
ORF1ab/nsp777D77YGacTac11AY.330.000067
ORF1ab/nsp777D77DgaCgaT11AY.34.10.00051
ORF1ab/nsp777D77NGacAac11AY.350.000233
ORF1ab/nsp777D77DgaCgaT11AY.390.000025
ORF1ab/nsp777D77YGacTac11AY.4.20.000022
ORF1ab/nsp777D77DgaCgaT11AY.4.2.10.000149
ORF1ab/nsp777D77DgaCgaT11AY.4.50.000107
ORF1ab/nsp777D77GgAcgGc11AY.430.000004
ORF1ab/nsp777D77delGAC---11AY.430.000004
ORF1ab/nsp777D77TGACACA11AY.440.000006
ORF1ab/nsp777D77GgAcgGc11AY.440.000006
ORF1ab/nsp777D77HGacCac11AY.460.000104
ORF1ab/nsp777D77NGacAac11AY.46.20.000635
ORF1ab/nsp777D77AgAcgCc11AY.46.40.000165
ORF1ab/nsp777D77NGacAac11AY.50.000021
ORF1ab/nsp777D77GgAcgGc11AY.50.000021
ORF1ab/nsp777D77YGacTac11AY.50.000021
ORF1ab/nsp777D77GgAcgGc11AY.5.30.000337
ORF1ab/nsp777D77NGacAac11AY.5.40.000277
ORF1ab/nsp777D77YGacTac11AY.500.000799
ORF1ab/nsp777D77DgaCgaT11AY.520.000814
ORF1ab/nsp777D77DgaCgaT11AY.530.000288
ORF1ab/nsp777D77NGacAac11AY.550.000917
ORF1ab/nsp777D77NGacAac11AY.560.001605
ORF1ab/nsp777D77GgAcgGc11AY.590.00053
ORF1ab/nsp777D77NGacAac11AY.620.000436
ORF1ab/nsp777D77GgAcgGc11AY.630.000387
ORF1ab/nsp777D77NGacAac11AY.650.000533
ORF1ab/nsp777D77NGacAac11AY.680.000274
ORF1ab/nsp777D77DgaCgaT11AY.680.000274
ORF1ab/nsp777D77GgAcgGc11AY.7.10.000113
ORF1ab/nsp777D77DgaCgaT11AY.700.000209
ORF1ab/nsp777D77YGacTac11AY.700.000209
ORF1ab/nsp777D77NGacAac11AY.720.001361
ORF1ab/nsp777D77GgAcgGc11AY.750.000056
ORF1ab/nsp777D77NGacAac11AY.75.10.00018
ORF1ab/nsp777D77AgAcgCc11AY.810.001992
ORF1ab/nsp777D77NGacAac11AY.840.000437
ORF1ab/nsp777D77DgaCgaT11AY.870.000833
ORF1ab/nsp777D77DgaCgaT11AY.90.000068
ORF1ab/nsp777D77YGacTac11AY.90.000068
ORF1ab/nsp777D77NGacAac11AY.9.20.000037
ORF1ab/nsp777D77AgAcgCc11AY.920.000287
ORF1ab/nsp777D77YGacTac11AY.980.000079
ORF1ab/nsp777D77NGacAac11AZ.20.000821
ORF1ab/nsp777D77YGacTac11AZ.50.003509
ORF1ab/nsp777D77EgaCgaA11B0.000128
ORF1ab/nsp777D77VgAcgTc11B.10.000009
ORF1ab/nsp777D77EgaCgaA11B.10.000009
ORF1ab/nsp777D77delGAC---11B.10.000009
ORF1ab/nsp777D77SGAcAGc11B.1.10.000018
ORF1ab/nsp777D77DgaCgaT11B.1.1.10.000327
ORF1ab/nsp777D77DgaCgaT11B.1.1.1810.004545
ORF1ab/nsp777D77YGacTac11B.1.1.2140.000055
ORF1ab/nsp777D77NGacAac11B.1.1.2220.000204
ORF1ab/nsp777D77DgaCgaT11B.1.1.2560.013699
ORF1ab/nsp777D77DgaCgaT11B.1.1.2740.005051
ORF1ab/nsp777D77DgaCgaT11B.1.1.2770.000759
ORF1ab/nsp777D77NGacAac11B.1.1.2880.001916
ORF1ab/nsp777D77DgaCgaT11B.1.1.2880.001916
ORF1ab/nsp777D77NGacAac11B.1.1.2940.001266
ORF1ab/nsp777D77NGacAac11B.1.1.3150.008475
ORF1ab/nsp777D77NGacAac11B.1.1.3160.000925
ORF1ab/nsp777D77GgAcgGc11B.1.1.3160.000925
ORF1ab/nsp777D77NGacAac11B.1.1.3170.000412
ORF1ab/nsp777D77DgaCgaT11B.1.1.3260.001761
ORF1ab/nsp777D77DgaCgaT11B.1.1.370.000193
ORF1ab/nsp777D77NGacAac11B.1.1.3870.058824
ORF1ab/nsp777D77DgaCgaT11B.1.1.390.00051
ORF1ab/nsp777D77NGacAac11B.1.1.4090.002833
ORF1ab/nsp777D77YGacTac11B.1.1.4090.002833
ORF1ab/nsp777D77GgAcgGc11B.1.1.4200.001006
ORF1ab/nsp777D77DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp777D77DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp777D77DgaCgaT11B.1.1.630.000386
ORF1ab/nsp777D77GgAcgGc11B.1.1.70.000001
ORF1ab/nsp777D77HGacCac11B.1.1.70.000001
ORF1ab/nsp777D77DgaCgaT11B.1.1.830.00271
ORF1ab/nsp777D77DgaCgaT11B.1.130.002375
ORF1ab/nsp777D77GgAcgGc11B.1.1600.000031
ORF1ab/nsp777D77DgaCgaT11B.1.160.280.002924
ORF1ab/nsp777D77DgaCgaT11B.1.1690.014925
ORF1ab/nsp777D77DgaCgaT11B.1.177.170.000821
ORF1ab/nsp777D77DgaCgaT11B.1.177.200.001517
ORF1ab/nsp777D77NGacAac11B.1.177.40.000211
ORF1ab/nsp777D77NGacAac11B.1.177.440.000519
ORF1ab/nsp777D77GgAcgGc11B.1.177.570.000281
ORF1ab/nsp777D77DgaCgaT11B.1.177.570.000281
ORF1ab/nsp777D77DgaCgaT11B.1.177.60.000977
ORF1ab/nsp777D77DgaCgaT11B.1.177.600.000218
ORF1ab/nsp777D77DgaCgaT11B.1.177.650.000665
ORF1ab/nsp777D77NGacAac11B.1.177.70.000165
ORF1ab/nsp777D77VgAcgTc11B.1.177.770.000726
ORF1ab/nsp777D77DgaCgaT11B.1.177.790.002342
ORF1ab/nsp777D77DgaCgaT11B.1.177.80.000752
ORF1ab/nsp777D77DgaCgaT11B.1.177.830.001481
ORF1ab/nsp777D77DgaCgaT11B.1.177.860.000183
ORF1ab/nsp777D77delGAC---11B.1.20.000009
ORF1ab/nsp777D77NGacAac11B.1.2140.003663
ORF1ab/nsp777D77NGacAac11B.1.220.001318
ORF1ab/nsp777D77YGacTac11B.1.2210.000071
ORF1ab/nsp777D77YGacTac11B.1.221.30.000833
ORF1ab/nsp777D77DgaCgaT11B.1.2340.000132
ORF1ab/nsp777D77NGacAac11B.1.2430.00007
ORF1ab/nsp777D77NGacAac11B.1.2580.000067
ORF1ab/nsp777D77NGacAac11B.1.258.170.000104
ORF1ab/nsp777D77YGacTac11B.1.258.170.000104
ORF1ab/nsp777D77AgAcgCc11B.1.2890.00266
ORF1ab/nsp777D77YGacTac11B.1.3020.013333
ORF1ab/nsp777D77DgaCgaT11B.1.3110.000275
ORF1ab/nsp777D77GgAcgGc11B.1.360.000146
ORF1ab/nsp777D77YGacTac11B.1.36.190.009259
ORF1ab/nsp777D77HGacCac11B.1.36.360.000602
ORF1ab/nsp777D77NGacAac11B.1.36.80.001
ORF1ab/nsp777D77YGacTac11B.1.36.80.001
ORF1ab/nsp777D77NGacAac11B.1.3610.001289
ORF1ab/nsp777D77YGacTac11B.1.3660.004878
ORF1ab/nsp777D77DgaCgaT11B.1.3750.00082
ORF1ab/nsp777D77EgaCgaA11B.1.4040.001302
ORF1ab/nsp777D77NGacAac11B.1.4160.001269
ORF1ab/nsp777D77AgAcgCc11B.1.416.10.001563
ORF1ab/nsp777D77GgAcgGc11B.1.4270.00005
ORF1ab/nsp777D77NGacAac11B.1.4270.00005
ORF1ab/nsp777D77AgAcgCc11B.1.4290.000024
ORF1ab/nsp777D77DgaCgaT11B.1.4290.000024
ORF1ab/nsp777D77NGacAac11B.1.4330.003195
ORF1ab/nsp777D77DgaCgaT11B.1.438.10.000107
ORF1ab/nsp777D77AgAcgCc11B.1.5250.000113
ORF1ab/nsp777D77del2gACg--11B.1.5250.000113
ORF1ab/nsp777D77DgaCgaT11B.1.5650.00081
ORF1ab/nsp777D77DgaCgaT11B.1.5760.000907
ORF1ab/nsp777D77DgaCgaT11B.1.6020.006536
ORF1ab/nsp777D77NGacAac11B.1.6090.000479
ORF1ab/nsp777D77DgaCgaT11B.1.6090.000479
ORF1ab/nsp777D77GgAcgGc11B.1.617.20.000004
ORF1ab/nsp777D77KGaCAaA11B.1.617.20.000004
ORF1ab/nsp777D77AgAcgCc11B.1.617.20.000004
ORF1ab/nsp777D77DgaCgaT11B.40.002208
ORF1ab/nsp777D77DgaCgaT11B.400.000364
ORF1ab/nsp777D77NGacAac11B.550.00295
ORF1ab/nsp777D77DgaCgaT11C.10.002392
ORF1ab/nsp777D77KGaCAaA11C.170.055556
ORF1ab/nsp777D77DgaCgaT11C.300.001727
ORF1ab/nsp777D77NGacAac11D.20.000075
ORF1ab/nsp777D77delGAC---11N.40.004255
ORF1ab/nsp777D77DgaCgaT11P.1.10.000318
ORF1ab/nsp777D77NGacAac11P.1.120.000484
ORF1ab/nsp777D77DgaCgaT11P.1.120.000484
ORF1ab/nsp777D77DgaCgaT11P.1.130.000898
ORF1ab/nsp777D77NGacAac11P.1.170.000162
ORF1ab/nsp777D77DgaCgaT11P.1.170.000162
ORF1ab/nsp777D77DgaCgaT11P.1.20.001156
ORF1ab/nsp777D77DgaCgaT11P.1.40.000977
ORF1ab/nsp777D77DgaCgaT11Q.10.000126
ORF1ab/nsp777D77DgaCgaT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.