CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 72

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp772C72SC3931SnonsynTgtAgt8718490.97474212056-12058
ORF1ab/nsp772C72SC3931SnonsyntGttCt871220.025258312056-12058
ORF1ab/nsp772C72CC3931CsyntgTtgC108108112056-12058
ORF1ab/nsp772C72delC3931deldelTGT---1111112056-12058
ORF1ab/nsp772C72YC3931YnonsyntGttAt1111112056-12058
ORF1ab/nsp772C72FC3931FnonsyntGttTt88112056-12058
ORF1ab/nsp772C72RC3931RnonsynTgtCgt44112056-12058
ORF1ab/nsp772C72del1C3931del1deltgTtg-430.7512056-12058
ORF1ab/nsp772C72del1C3931del1delTGt-Tt410.2512056-12058
ORF1ab/nsp772C72XC3931XnonsyntgTtgA33112056-12058
ORF1ab/nsp772C72WC3931WnonsyntgTtgG33112056-12058
ORF1ab/nsp772C72del2C3931del2delTGt--t210.512056-12058
ORF1ab/nsp772C72del2C3931del2delTGT--C210.512056-12058
ORF1ab/nsp772C72LC3931LnonsyntGTtTA210.512056-12058
ORF1ab/nsp772C72LC3931LnonsyntGTtTG210.512056-12058
ORF1ab/nsp772C72GC3931GnonsynTgtGgt11112056-12058

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp772C72STgtAgt849871All0.000162
ORF1ab/nsp772C72StGttCt22871All0.000004
ORF1ab/nsp772C72STgtAgt802802AY.600.752345
ORF1ab/nsp772C72CtgTtgC108108All0.000021
ORF1ab/nsp772C72CtgTtgC2525B.1.1770.000329
ORF1ab/nsp772C72CtgTtgC1313B.1.1.70.000012
ORF1ab/nsp772C72StGttCt1213B.1.20.000106
ORF1ab/nsp772C72STgtAgt113B.1.20.000009
ORF1ab/nsp772C72delTGT---1111All0.000002
ORF1ab/nsp772C72YtGttAt1111All0.000002
ORF1ab/nsp772C72FtGttTt88All0.000002
ORF1ab/nsp772C72StGttCt88AY.46.60.000578
ORF1ab/nsp772C72STgtAgt88B.1.1.70.000007
ORF1ab/nsp772C72CtgTtgC88B.1.617.20.00003
ORF1ab/nsp772C72CtgTtgC77AY.40.000011
ORF1ab/nsp772C72STgtAgt77AY.470.000218
ORF1ab/nsp772C72CtgTtgC77B.1.20.000062
ORF1ab/nsp772C72CtgTtgC55AY.430.000022
ORF1ab/nsp772C72CtgTtgC55AY.440.00003
ORF1ab/nsp772C72delTGT---440.222222
ORF1ab/nsp772C72STgtAgt440.222222
ORF1ab/nsp772C72RTgtCgt44All0.000001
ORF1ab/nsp772C72del1tgTtg-34All0.000001
ORF1ab/nsp772C72del1TGt-Tt14All0
ORF1ab/nsp772C72CtgTtgC44B.1.1.390.002039
ORF1ab/nsp772C72CtgTtgC44B.1.5090.003463
ORF1ab/nsp772C72WtgTtgG33All0.000001
ORF1ab/nsp772C72XtgTtgA33All0.000001
ORF1ab/nsp772C72STgtAgt33AY.1000.000138
ORF1ab/nsp772C72YtGttAt33AY.40.000005
ORF1ab/nsp772C72STgtAgt33AY.430.000013
ORF1ab/nsp772C72LtGTtTG120.055556
ORF1ab/nsp772C72LtGTtTA120.055556
ORF1ab/nsp772C72del2TGt--t12All0
ORF1ab/nsp772C72LtGTtTA12All0
ORF1ab/nsp772C72LtGTtTG12All0
ORF1ab/nsp772C72del2TGT--C12All0
ORF1ab/nsp772C72STgtAgt22AY.670.000929
ORF1ab/nsp772C72STgtAgt22AY.75.10.000361
ORF1ab/nsp772C72STgtAgt12B.10.000009
ORF1ab/nsp772C72StGttCt12B.10.000009
ORF1ab/nsp772C72FtGttTt22B.1.10.000036
ORF1ab/nsp772C72delTGT---22B.1.1.70.000002
ORF1ab/nsp772C72STgtAgt22B.1.1770.000026
ORF1ab/nsp772C72STgtAgt22B.1.2580.000133
ORF1ab/nsp772C72del1tgTtg-22B.1.6270.00404
ORF1ab/nsp772C72CtgTtgC22C.380.016129
ORF1ab/nsp772C72CtgTtgC22P.1.170.000324
ORF1ab/nsp772C72FtGttTt110.055556
ORF1ab/nsp772C72WtgTtgG110.055556
ORF1ab/nsp772C72XtgTtgA110.055556
ORF1ab/nsp772C72GTgtGgt11All0
ORF1ab/nsp772C72WtgTtgG11AY.1000.000046
ORF1ab/nsp772C72CtgTtgC11AY.1020.000027
ORF1ab/nsp772C72YtGttAt11AY.1030.000006
ORF1ab/nsp772C72CtgTtgC11AY.1030.000006
ORF1ab/nsp772C72CtgTtgC11AY.1040.001984
ORF1ab/nsp772C72CtgTtgC11AY.1180.000063
ORF1ab/nsp772C72STgtAgt11AY.130.000161
ORF1ab/nsp772C72GTgtGgt11AY.250.000006
ORF1ab/nsp772C72CtgTtgC11AY.250.000006
ORF1ab/nsp772C72YtGttAt11AY.250.000006
ORF1ab/nsp772C72StGttCt11AY.260.000028
ORF1ab/nsp772C72YtGttAt11AY.30.00001
ORF1ab/nsp772C72CtgTtgC11AY.30.00001
ORF1ab/nsp772C72del2TGT--C11AY.30.00001
ORF1ab/nsp772C72CtgTtgC11AY.330.000067
ORF1ab/nsp772C72STgtAgt11AY.40.000002
ORF1ab/nsp772C72CtgTtgC11AY.420.00004
ORF1ab/nsp772C72YtGttAt11AY.430.000004
ORF1ab/nsp772C72delTGT---11AY.430.000004
ORF1ab/nsp772C72STgtAgt11AY.440.000006
ORF1ab/nsp772C72YtGttAt11AY.50.000021
ORF1ab/nsp772C72STgtAgt11AY.550.000917
ORF1ab/nsp772C72YtGttAt11AY.610.000105
ORF1ab/nsp772C72STgtAgt11AY.750.000056
ORF1ab/nsp772C72CtgTtgC11AY.750.000056
ORF1ab/nsp772C72XtgTtgA11AY.790.001211
ORF1ab/nsp772C72STgtAgt11AY.880.000884
ORF1ab/nsp772C72STgtAgt11AY.930.000273
ORF1ab/nsp772C72YtGttAt11AY.98.10.000048
ORF1ab/nsp772C72del2TGt--t11B.10.000009
ORF1ab/nsp772C72delTGT---11B.10.000009
ORF1ab/nsp772C72CtgTtgC11B.10.000009
ORF1ab/nsp772C72FtGttTt11B.10.000009
ORF1ab/nsp772C72del1TGt-Tt11B.10.000009
ORF1ab/nsp772C72STgtAgt11B.1.10.000018
ORF1ab/nsp772C72CtgTtgC11B.1.10.000018
ORF1ab/nsp772C72CtgTtgC11B.1.1.2070.001182
ORF1ab/nsp772C72STgtAgt11B.1.1.2220.000204
ORF1ab/nsp772C72CtgTtgC11B.1.1.2290.005747
ORF1ab/nsp772C72FtGttTt11B.1.1.2790.001121
ORF1ab/nsp772C72CtgTtgC11B.1.1.2840.000107
ORF1ab/nsp772C72CtgTtgC11B.1.1.3170.000412
ORF1ab/nsp772C72CtgTtgC11B.1.1.4640.001473
ORF1ab/nsp772C72CtgTtgC11B.1.1.630.000386
ORF1ab/nsp772C72FtGttTt11B.1.1.70.000001
ORF1ab/nsp772C72XtgTtgA11B.1.1.70.000001
ORF1ab/nsp772C72RTgtCgt11B.1.1.70.000001
ORF1ab/nsp772C72del1tgTtg-11B.1.1.70.000001
ORF1ab/nsp772C72CtgTtgC11B.1.1600.000031
ORF1ab/nsp772C72STgtAgt11B.1.177.210.000076
ORF1ab/nsp772C72CtgTtgC11B.1.177.820.000477
ORF1ab/nsp772C72FtGttTt11B.1.20.000009
ORF1ab/nsp772C72delTGT---11B.1.20.000009
ORF1ab/nsp772C72CtgTtgC11B.1.351.30.000876
ORF1ab/nsp772C72CtgTtgC11B.1.4000.000429
ORF1ab/nsp772C72WtgTtgG11B.1.4090.000781
ORF1ab/nsp772C72CtgTtgC11B.1.4270.00005
ORF1ab/nsp772C72RTgtCgt11B.1.5210.004975
ORF1ab/nsp772C72CtgTtgC11B.1.5640.000426
ORF1ab/nsp772C72RTgtCgt11B.1.5870.001898
ORF1ab/nsp772C72FtGttTt11B.1.5960.000087
ORF1ab/nsp772C72STgtAgt11B.1.617.20.000004
ORF1ab/nsp772C72RTgtCgt11B.1.617.20.000004
ORF1ab/nsp772C72STgtAgt11B.1.6370.000073
ORF1ab/nsp772C72delTGT---11C.170.055556
ORF1ab/nsp772C72CtgTtgC11C.36.3.10.002717
ORF1ab/nsp772C72CtgTtgC11D.20.000075
ORF1ab/nsp772C72YtGttAt11D.20.000075
ORF1ab/nsp772C72delTGT---11N.40.004255
ORF1ab/nsp772C72CtgTtgC11P.10.000016