CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 70

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp770K70RK3929RnonsynaAgaGg164216410.99939112050-12052
ORF1ab/nsp770K70RK3929RnonsynaAGaGA164210.00060901312050-12052
ORF1ab/nsp770K70NK3929NnonsynaaGaaT7847640.9744912050-12052
ORF1ab/nsp770K70NK3929NnonsynaaGaaC784200.025510212050-12052
ORF1ab/nsp770K70KK3929KsynaaGaaA220220112050-12052
ORF1ab/nsp770K70delK3929deldelAAG---1212112050-12052
ORF1ab/nsp770K70SK3929SnonsynAAgTCg55112050-12052
ORF1ab/nsp770K70TK3929TnonsynaAgaCg33112050-12052
ORF1ab/nsp770K70MK3929MnonsynaAgaTg22112050-12052
ORF1ab/nsp770K70XK3929XnonsynAagTag11112050-12052
ORF1ab/nsp770K70QK3929QnonsynAagCag11112050-12052
ORF1ab/nsp770K70EK3929EnonsynAagGag11112050-12052
ORF1ab/nsp770K70del2K3929del2delaAGa--11112050-12052

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp770K70RaAgaGg16411642All0.000314
ORF1ab/nsp770K70RaAGaGA11642All0
ORF1ab/nsp770K70RaAgaGg15571557B.1.619.10.998717
ORF1ab/nsp770K70NaaGaaT764784All0.000146
ORF1ab/nsp770K70NaaGaaC20784All0.000004
ORF1ab/nsp770K70KaaGaaA220220All0.000042
ORF1ab/nsp770K70NaaGaaT8585B.1.10.001542
ORF1ab/nsp770K70NaaGaaT8182AY.40.000126
ORF1ab/nsp770K70NaaGaaC182AY.40.000002
ORF1ab/nsp770K70NaaGaaT5556AY.430.000244
ORF1ab/nsp770K70NaaGaaC156AY.430.000004
ORF1ab/nsp770K70NaaGaaT5151B.1.4290.0012
ORF1ab/nsp770K70NaaGaaT4949B.1.177.570.013768
ORF1ab/nsp770K70NaaGaaT4646B.1.617.20.000173
ORF1ab/nsp770K70KaaGaaA4242B.1.5510.054194
ORF1ab/nsp770K70KaaGaaA4141AY.260.001161
ORF1ab/nsp770K70RaAgaGg3737AY.4.20.000802
ORF1ab/nsp770K70NaaGaaT3737B.1.1.700.012619
ORF1ab/nsp770K70KaaGaaA3333B.1.1.70.00003
ORF1ab/nsp770K70NaaGaaT2929AY.440.000177
ORF1ab/nsp770K70NaaGaaT2424AY.250.000144
ORF1ab/nsp770K70KaaGaaA2121B.1.20.000185
ORF1ab/nsp770K70NaaGaaT2121B.1.20.000185
ORF1ab/nsp770K70NaaGaaT1616AY.1020.000424
ORF1ab/nsp770K70NaaGaaC916AY.1030.000056
ORF1ab/nsp770K70NaaGaaT716AY.1030.000043
ORF1ab/nsp770K70NaaGaaT1515B.1.1.70.000013
ORF1ab/nsp770K70NaaGaaT1414AY.30.000139
ORF1ab/nsp770K70KaaGaaA1414B.1.617.20.000053
ORF1ab/nsp770K70delAAG---1212All0.000002
ORF1ab/nsp770K70NaaGaaT1212B.1.4270.000606
ORF1ab/nsp770K70KaaGaaA1111AY.440.000067
ORF1ab/nsp770K70NaaGaaT1111AY.5.30.003711
ORF1ab/nsp770K70NaaGaaT1111B.10.000101
ORF1ab/nsp770K70NaaGaaT611B.1.1770.000079
ORF1ab/nsp770K70NaaGaaC511B.1.1770.000066
ORF1ab/nsp770K70NaaGaaT1010AY.39.10.000396
ORF1ab/nsp770K70NaaGaaT1010AY.98.10.000484
ORF1ab/nsp770K70KaaGaaA77AY.1020.000186
ORF1ab/nsp770K70NaaGaaT77AY.420.000282
ORF1ab/nsp770K70NaaGaaT77AY.46.20.004447
ORF1ab/nsp770K70NaaGaaT77B.1.9.50.039773
ORF1ab/nsp770K70NaaGaaT66AY.1200.000223
ORF1ab/nsp770K70NaaGaaT66AY.230.000418
ORF1ab/nsp770K70NaaGaaT66AY.390.000148
ORF1ab/nsp770K70RaAgaGg66AY.50.000124
ORF1ab/nsp770K70NaaGaaT56B.1.2060.004078
ORF1ab/nsp770K70NaaGaaC16B.1.2060.000816
ORF1ab/nsp770K70NaaGaaT66B.1.5880.00546
ORF1ab/nsp770K70RaAgaGg66P.1.140.000287
ORF1ab/nsp770K70SAAgTCg55All0.000001
ORF1ab/nsp770K70KaaGaaA55AY.250.00003
ORF1ab/nsp770K70RaAgaGg55AY.40.000008
ORF1ab/nsp770K70NaaGaaT55B.1.1280.003177
ORF1ab/nsp770K70NaaGaaT55B.1.2980.010571
ORF1ab/nsp770K70RaAgaGg55B.1.6190.004355
ORF1ab/nsp770K70SAAgTCg440.222222
ORF1ab/nsp770K70delAAG---440.222222
ORF1ab/nsp770K70NaaGaaT44AY.1180.000251
ORF1ab/nsp770K70KaaGaaA44AY.290.000063
ORF1ab/nsp770K70NaaGaaT44AY.290.000063
ORF1ab/nsp770K70NaaGaaT44B.1.1.5190.000159
ORF1ab/nsp770K70NaaGaaT44B.1.2400.000862
ORF1ab/nsp770K70NaaGaaT44B.1.360.000584
ORF1ab/nsp770K70TaAgaCg33All0.000001
ORF1ab/nsp770K70RaAgaGg33AY.1030.000019
ORF1ab/nsp770K70KaaGaaA33AY.1130.000427
ORF1ab/nsp770K70KaaGaaA33AY.40.000005
ORF1ab/nsp770K70NaaGaaT33AY.4.20.000065
ORF1ab/nsp770K70NaaGaaT33AY.580.002722
ORF1ab/nsp770K70NaaGaaT33AY.750.000168
ORF1ab/nsp770K70NaaGaaT33AY.9.20.00011
ORF1ab/nsp770K70NaaGaaT33AZ.30.004559
ORF1ab/nsp770K70delAAG---33B.10.000027
ORF1ab/nsp770K70NaaGaaT33B.1.1.1860.010309
ORF1ab/nsp770K70NaaGaaT33B.1.3960.002117
ORF1ab/nsp770K70NaaGaaT33B.1.4160.003807
ORF1ab/nsp770K70KaaGaaA33P.1.140.000143
ORF1ab/nsp770K70RaAgaGg22AE.80.000978
ORF1ab/nsp770K70MaAgaTg22All0
ORF1ab/nsp770K70KaaGaaA22AY.1030.000012
ORF1ab/nsp770K70NaaGaaT22AY.200.000078
ORF1ab/nsp770K70RaAgaGg22AY.250.000012
ORF1ab/nsp770K70NaaGaaT22AY.340.000194
ORF1ab/nsp770K70KaaGaaA22AY.430.000009
ORF1ab/nsp770K70NaaGaaT22AY.450.000243
ORF1ab/nsp770K70NaaGaaT22AY.46.40.000329
ORF1ab/nsp770K70NaaGaaT22AY.5.40.000553
ORF1ab/nsp770K70NaaGaaT22AY.610.00021
ORF1ab/nsp770K70RaAgaGg22AY.860.00166
ORF1ab/nsp770K70NaaGaaT12AY.980.000079
ORF1ab/nsp770K70NaaGaaC12AY.980.000079
ORF1ab/nsp770K70KaaGaaA22AY.98.10.000097
ORF1ab/nsp770K70NaaGaaT22B0.000256
ORF1ab/nsp770K70NaaGaaT22B.1.1.2790.002242
ORF1ab/nsp770K70NaaGaaT22B.1.1.3480.001592
ORF1ab/nsp770K70RaAgaGg22B.1.1.5190.000079
ORF1ab/nsp770K70delAAG---22B.1.1.70.000002
ORF1ab/nsp770K70NaaGaaT22B.1.177.830.002963
ORF1ab/nsp770K70NaaGaaT22B.1.36.180.00084
ORF1ab/nsp770K70NaaGaaT22B.1.36.290.001035
ORF1ab/nsp770K70KaaGaaA22B.1.36.290.001035
ORF1ab/nsp770K70NaaGaaT22B.1.3690.00057
ORF1ab/nsp770K70KaaGaaA22B.1.438.10.000215
ORF1ab/nsp770K70KaaGaaA22B.1.4740.003802
ORF1ab/nsp770K70KaaGaaA22B.1.5260.000047
ORF1ab/nsp770K70RaAgaGg22B.1.5680.002222
ORF1ab/nsp770K70KaaGaaA22B.1.5820.000981
ORF1ab/nsp770K70RaAgaGg22B.1.617.20.000008
ORF1ab/nsp770K70NaaGaaC12D.20.000075
ORF1ab/nsp770K70NaaGaaT12D.20.000075
ORF1ab/nsp770K70KaaGaaA110.055556
ORF1ab/nsp770K70QAagCag110.055556
ORF1ab/nsp770K70KaaGaaA11A0.000387
ORF1ab/nsp770K70NaaGaaT11AD.20.000219
ORF1ab/nsp770K70KaaGaaA11AE.80.000489
ORF1ab/nsp770K70del2aAGa--11All0
ORF1ab/nsp770K70XAagTag11All0
ORF1ab/nsp770K70EAagGag11All0
ORF1ab/nsp770K70QAagCag11All0
ORF1ab/nsp770K70NaaGaaT11AY.1060.000335
ORF1ab/nsp770K70NaaGaaT11AY.1160.000287
ORF1ab/nsp770K70NaaGaaT11AY.1170.000085
ORF1ab/nsp770K70NaaGaaT11AY.1190.000035
ORF1ab/nsp770K70RaAgaGg11AY.130.000161
ORF1ab/nsp770K70KaaGaaA11AY.140.000088
ORF1ab/nsp770K70NaaGaaT11AY.260.000028
ORF1ab/nsp770K70RaAgaGg11AY.260.000028
ORF1ab/nsp770K70NaaGaaT11AY.270.000065
ORF1ab/nsp770K70KaaGaaA11AY.30.00001
ORF1ab/nsp770K70del2aAGa--11AY.30.00001
ORF1ab/nsp770K70KaaGaaA11AY.390.000025
ORF1ab/nsp770K70KaaGaaA11AY.4.50.000107
ORF1ab/nsp770K70delAAG---11AY.430.000004
ORF1ab/nsp770K70RaAgaGg11AY.430.000004
ORF1ab/nsp770K70NaaGaaT11AY.46.60.000072
ORF1ab/nsp770K70NaaGaaT11AY.470.000031
ORF1ab/nsp770K70KaaGaaA11AY.50.000021
ORF1ab/nsp770K70KaaGaaA11AY.5.30.000337
ORF1ab/nsp770K70KaaGaaA11AY.5.40.000277
ORF1ab/nsp770K70NaaGaaT11AY.550.000917
ORF1ab/nsp770K70NaaGaaT11AY.60.000041
ORF1ab/nsp770K70KaaGaaA11AY.600.000938
ORF1ab/nsp770K70KaaGaaA11AY.610.000105
ORF1ab/nsp770K70NaaGaaT11AY.630.000387
ORF1ab/nsp770K70NaaGaaT11AY.650.000533
ORF1ab/nsp770K70NaaGaaC11AY.670.000464
ORF1ab/nsp770K70RaAgaGg11AY.680.000274
ORF1ab/nsp770K70NaaGaaT11AY.820.001357
ORF1ab/nsp770K70NaaGaaT11AY.900.000684
ORF1ab/nsp770K70KaaGaaA11B.10.000009
ORF1ab/nsp770K70TaAgaCg11B.10.000009
ORF1ab/nsp770K70EAagGag11B.10.000009
ORF1ab/nsp770K70SAAgTCg11B.1.10.000018
ORF1ab/nsp770K70KaaGaaA11B.1.10.000018
ORF1ab/nsp770K70NaaGaaT11B.1.1.10.000327
ORF1ab/nsp770K70NaaGaaT11B.1.1.1010.01
ORF1ab/nsp770K70NaaGaaT11B.1.1.2220.000204
ORF1ab/nsp770K70NaaGaaT11B.1.1.2410.00207
ORF1ab/nsp770K70NaaGaaT11B.1.1.3290.003846
ORF1ab/nsp770K70NaaGaaT11B.1.1.3690.000446
ORF1ab/nsp770K70NaaGaaT11B.1.1.3980.003226
ORF1ab/nsp770K70delAAG---11B.1.1.4480.002033
ORF1ab/nsp770K70MaAgaTg11B.1.1.70.000001
ORF1ab/nsp770K70RaAgaGg11B.1.1.70.000001
ORF1ab/nsp770K70TaAgaCg11B.1.1.70.000001
ORF1ab/nsp770K70NaaGaaT11B.1.1570.002985
ORF1ab/nsp770K70XAagTag11B.1.1600.000031
ORF1ab/nsp770K70MaAgaTg11B.1.1770.000013
ORF1ab/nsp770K70TaAgaCg11B.1.1770.000013
ORF1ab/nsp770K70NaaGaaT11B.1.177.730.000566
ORF1ab/nsp770K70RaAgaGg11B.1.20.000009
ORF1ab/nsp770K70NaaGaaT11B.1.2210.000071
ORF1ab/nsp770K70NaaGaaT11B.1.230.006061
ORF1ab/nsp770K70RaAgaGg11B.1.230.006061
ORF1ab/nsp770K70NaaGaaT11B.1.2390.001221
ORF1ab/nsp770K70RaAgaGg11B.1.2430.00007
ORF1ab/nsp770K70NaaGaaT11B.1.2430.00007
ORF1ab/nsp770K70NaaGaaT11B.1.258.120.007874
ORF1ab/nsp770K70RaAgaGg11B.1.36.10.00114
ORF1ab/nsp770K70NaaGaaT11B.1.36.80.001
ORF1ab/nsp770K70NaaGaaT11B.1.3670.000792
ORF1ab/nsp770K70NaaGaaT11B.1.3720.010989
ORF1ab/nsp770K70NaaGaaT11B.1.4430.004673
ORF1ab/nsp770K70NaaGaaT11B.1.4560.003268
ORF1ab/nsp770K70NaaGaaT11B.1.4590.004082
ORF1ab/nsp770K70NaaGaaT11B.1.4680.005714
ORF1ab/nsp770K70RaAgaGg11B.1.4970.000315
ORF1ab/nsp770K70NaaGaaT11B.1.5210.004975
ORF1ab/nsp770K70NaaGaaT11B.1.5950.000261
ORF1ab/nsp770K70NaaGaaT11B.1.5970.00463
ORF1ab/nsp770K70KaaGaaA11B.1.617.10.000129
ORF1ab/nsp770K70NaaGaaT11B.310.003731
ORF1ab/nsp770K70KaaGaaA11B.390.002331
ORF1ab/nsp770K70NaaGaaT11C.10.002392
ORF1ab/nsp770K70RaAGaGA11C.170.055556
ORF1ab/nsp770K70delAAG---11N.40.004255
ORF1ab/nsp770K70NaaGaaT11P.40.003802
ORF1ab/nsp770K70KaaGaaA11Q.20.000613