CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp7 | 67 | D67D | D3926D | syn | gaC | gaT | 3166 | 3166 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67Y | D3926Y | nonsyn | Gac | Tac | 152 | 151 | 0.993421 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67Y | D3926Y | nonsyn | GaC | TaT | 152 | 1 | 0.00657895 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67G | D3926G | nonsyn | gAc | gGc | 40 | 37 | 0.925 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67G | D3926G | nonsyn | gAC | gGT | 40 | 3 | 0.075 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67del | D3926del | del | GAC | --- | 28 | 28 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67N | D3926N | nonsyn | Gac | Aac | 24 | 24 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67A | D3926A | nonsyn | gAc | gCc | 15 | 15 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67H | D3926H | nonsyn | Gac | Cac | 8 | 8 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67E | D3926E | nonsyn | gaC | gaA | 4 | 3 | 0.75 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67V | D3926V | nonsyn | gAC | gTT | 4 | 2 | 0.5 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67V | D3926V | nonsyn | gAc | gTc | 4 | 2 | 0.5 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67E | D3926E | nonsyn | gaC | gaG | 4 | 1 | 0.25 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67S | D3926S | nonsyn | GAc | AGc | 3 | 3 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67K | D3926K | nonsyn | GaC | AaG | 3 | 3 | 1 | 12041-12043 |
ORF1ab/nsp7 | 67 | D67del1 | D3926del1 | del | gAC | g-T | 1 | 1 | 1 | 12041-12043 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3166 | 3166 | All | 0.000606 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 832 | 832 | B.1.36.1 | 0.948689 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 497 | 497 | B.1.1.7 | 0.000445 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 242 | 242 | B.1.149 | 0.828767 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 151 | 152 | All | 0.000029 |
ORF1ab/nsp7 | 67 | D67Y | GaC | TaT | 1 | 152 | All | 0 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 143 | 143 | AY.4 | 0.000223 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 133 | 133 | AY.4.5 | 0.014296 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 86 | 86 | B.1.617.2 | 0.000324 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 80 | 80 | P.1 | 0.00126 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 79 | 79 | AK.1 | 1 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 59 | 59 | B.1 | 0.00054 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 57 | 57 | B.1.1 | 0.001034 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 53 | 53 | AY.43 | 0.000235 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 50 | 50 | AY.93 | 0.013654 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 48 | 48 | B.1.221 | 0.00341 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 44 | 44 | AY.20 | 0.00171 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 37 | 40 | All | 0.000007 |
ORF1ab/nsp7 | 67 | D67G | gAC | gGT | 3 | 40 | All | 0.000001 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 33 | 33 | AY.3 | 0.000328 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 33 | 33 | AY.44 | 0.000201 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 31 | 31 | D.2 | 0.002326 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 29 | 29 | B.1.617.1 | 0.00374 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 28 | 28 | All | 0.000005 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 28 | 28 | B.1.1.159 | 0.130841 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 24 | 24 | All | 0.000005 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 23 | 23 | AY.4.5 | 0.002472 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 18 | 18 | B.1.258.17 | 0.001871 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 17 | 17 | B.1.177.81 | 0.003218 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 15 | 15 | All | 0.000003 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 14 | 14 | B.1.497 | 0.004407 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 13 | 13 | B.1.561 | 0.005161 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 11 | 11 | B.1.619 | 0.009582 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 10 | 10 | B.1.214.3 | 0.071429 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 8 | 8 | All | 0.000002 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 8 | 8 | AY.120.1 | 0.002568 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 8 | 8 | B.1.214.2 | 0.004796 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 7 | 7 | P.3 | 0.011164 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 5 | 5 | B.1.1.316 | 0.004625 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp7 | 67 | D67E | gaC | gaA | 3 | 4 | All | 0.000001 |
ORF1ab/nsp7 | 67 | D67V | gAC | gTT | 2 | 4 | All | 0 |
ORF1ab/nsp7 | 67 | D67V | gAc | gTc | 2 | 4 | All | 0 |
ORF1ab/nsp7 | 67 | D67E | gaC | gaG | 1 | 4 | All | 0 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp7 | 67 | D67G | gAC | gGT | 2 | 3 | 0.111111 | |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 3 | 0.055556 | |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp7 | 67 | D67K | GaC | AaG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp7 | 67 | D67S | GAc | AGc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | AU.2 | 0.007264 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | AY.49 | 0.009585 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp7 | 67 | D67E | gaC | gaA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp7 | 67 | D67Y | GaC | TaT | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | B.1.595.4 | 0.021898 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 3 | 3 | Q.2 | 0.00184 |
ORF1ab/nsp7 | 67 | D67K | GaC | AaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 67 | D67V | gAC | gTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | 0.055556 | |
ORF1ab/nsp7 | 67 | D67S | GAc | AGc | 1 | 1 | 0.055556 | |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp7 | 67 | D67del1 | gAC | g-T | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp7 | 67 | D67del1 | gAC | g-T | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp7 | 67 | D67S | GAc | AGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 67 | D67G | gAC | gGT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp7 | 67 | D67V | gAc | gTc | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp7 | 67 | D67E | gaC | gaG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp7 | 67 | D67K | GaC | AaG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp7 | 67 | D67S | GAc | AGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 67 | D67A | gAc | gCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp7 | 67 | D67V | gAc | gTc | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp7 | 67 | D67H | Gac | Cac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp7 | 67 | D67del | GAC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp7 | 67 | D67Y | Gac | Tac | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp7 | 67 | D67N | Gac | Aac | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp7 | 67 | D67G | gAc | gGc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp7 | 67 | D67D | gaC | gaT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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