CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 65

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp765A65VA3924VnonsyngCtgTt9829810.99898212035-12037
ORF1ab/nsp765A65VA3924VnonsyngCTgTA98210.0010183312035-12037
ORF1ab/nsp765A65AA3924AsyngcTgcC1601340.837512035-12037
ORF1ab/nsp765A65AA3924AsyngcTgcG160190.1187512035-12037
ORF1ab/nsp765A65AA3924AsyngcTgcA16070.0437512035-12037
ORF1ab/nsp765A65GA3924GnonsyngCtgGt2929112035-12037
ORF1ab/nsp765A65SA3924SnonsynGctTct1515112035-12037
ORF1ab/nsp765A65delA3924deldelGCT---1212112035-12037
ORF1ab/nsp765A65TA3924TnonsynGctAct88112035-12037
ORF1ab/nsp765A65PA3924PnonsynGctCct66112035-12037
ORF1ab/nsp765A65DA3924DnonsyngCtgAt44112035-12037
ORF1ab/nsp765A65IA3924InonsynGCtATt320.66666712035-12037
ORF1ab/nsp765A65IA3924InonsynGCTATC310.33333312035-12037
ORF1ab/nsp765A65KA3924KnonsynGCTAAA22112035-12037
ORF1ab/nsp765A65del1A3924del1delgcTgc-210.512035-12037
ORF1ab/nsp765A65del1A3924del1delGct-ct210.512035-12037
ORF1ab/nsp765A65YA3924YnonsynGCTTAC11112035-12037
ORF1ab/nsp765A65del2A3924del2delGCt--t11112035-12037

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp765A65VgCtgTt981982All0.000188
ORF1ab/nsp765A65VgCTgTA1982All0
ORF1ab/nsp765A65VgCtgTt213213B.1.1.70.000191
ORF1ab/nsp765A65AgcTgcC134160All0.000026
ORF1ab/nsp765A65AgcTgcG19160All0.000004
ORF1ab/nsp765A65AgcTgcA7160All0.000001
ORF1ab/nsp765A65VgCtgTt151151B.1.20.00133
ORF1ab/nsp765A65VgCtgTt138138B.1.9.40.846626
ORF1ab/nsp765A65VgCtgTt132132B.10.001209
ORF1ab/nsp765A65VgCtgTt3939AY.40.000061
ORF1ab/nsp765A65GgCtgGt2929All0.000006
ORF1ab/nsp765A65AgcTgcC2828AY.390.000692
ORF1ab/nsp765A65VgCtgTt2222B.1.1.5190.000874
ORF1ab/nsp765A65GgCtgGt2121B.1.1.70.000019
ORF1ab/nsp765A65VgCtgTt2020B.1.1770.000263
ORF1ab/nsp765A65VgCtgTt1717AY.1030.000106
ORF1ab/nsp765A65VgCtgTt1717B.1.1600.00053
ORF1ab/nsp765A65SGctTct1515All0.000003
ORF1ab/nsp765A65VgCtgTt1515B.1.4290.000353
ORF1ab/nsp765A65VgCtgTt1414AY.250.000084
ORF1ab/nsp765A65VgCtgTt1414B.1.617.20.000053
ORF1ab/nsp765A65VgCtgTt1313C.36.30.007374
ORF1ab/nsp765A65delGCT---1212All0.000002
ORF1ab/nsp765A65VgCtgTt1111AY.440.000067
ORF1ab/nsp765A65AgcTgcC1010AY.1070.00466
ORF1ab/nsp765A65VgCtgTt1010AY.30.000099
ORF1ab/nsp765A65AgcTgcC1010AY.40.000016
ORF1ab/nsp765A65AgcTgcC99B.1.4270.000454
ORF1ab/nsp765A65VgCtgTt88AD.20.001752
ORF1ab/nsp765A65TGctAct88All0.000002
ORF1ab/nsp765A65AgcTgcC88B.10.000073
ORF1ab/nsp765A65AgcTgcC58B.1.1.70.000004
ORF1ab/nsp765A65AgcTgcG28B.1.1.70.000002
ORF1ab/nsp765A65AgcTgcA18B.1.1.70.000001
ORF1ab/nsp765A65VgCtgTt77AY.1190.000247
ORF1ab/nsp765A65VgCtgTt77AY.20.002493
ORF1ab/nsp765A65AgcTgcC57AY.250.00003
ORF1ab/nsp765A65AgcTgcG27AY.250.000012
ORF1ab/nsp765A65VgCtgTt77AY.60.000288
ORF1ab/nsp765A65VgCtgTt77B.1.10.000127
ORF1ab/nsp765A65AgcTgcC57B.1.20.000044
ORF1ab/nsp765A65AgcTgcA27B.1.20.000018
ORF1ab/nsp765A65VgCtgTt77B.1.3510.000208
ORF1ab/nsp765A65AgcTgcC47B.1.617.20.000015
ORF1ab/nsp765A65AgcTgcG37B.1.617.20.000011
ORF1ab/nsp765A65VgCtgTt77B.1.90.04321
ORF1ab/nsp765A65PGctCct66All0.000001
ORF1ab/nsp765A65VgCtgTt66AY.430.000027
ORF1ab/nsp765A65AgcTgcC66AY.99.20.000553
ORF1ab/nsp765A65AgcTgcG55AY.750.00028
ORF1ab/nsp765A65VgCtgTt55B0.000639
ORF1ab/nsp765A65VgCtgTt55C.370.00058
ORF1ab/nsp765A65DgCtgAt44All0.000001
ORF1ab/nsp765A65AgcTgcC34AY.1020.00008
ORF1ab/nsp765A65AgcTgcG14AY.1020.000027
ORF1ab/nsp765A65AgcTgcC44AY.330.000267
ORF1ab/nsp765A65SGctTct44B.1.1.70.000004
ORF1ab/nsp765A65VgCtgTt44B.1.2580.000266
ORF1ab/nsp765A65VgCtgTt44B.1.4250.011976
ORF1ab/nsp765A65VgCtgTt34B.1.5260.000071
ORF1ab/nsp765A65VgCTgTA14B.1.5260.000024
ORF1ab/nsp765A65VgCtgTt44B.1.9.50.022727
ORF1ab/nsp765A65IGCtATt23All0
ORF1ab/nsp765A65IGCTATC13All0
ORF1ab/nsp765A65AgcTgcC33AY.1130.000427
ORF1ab/nsp765A65VgCtgTt33AY.470.000093
ORF1ab/nsp765A65VgCtgTt33AY.90.000203
ORF1ab/nsp765A65DgCtgAt33B.10.000027
ORF1ab/nsp765A65delGCT---33B.1.1.70.000003
ORF1ab/nsp765A65AgcTgcC33B.1.1770.00004
ORF1ab/nsp765A65delGCT---33B.1.177.600.000655
ORF1ab/nsp765A65GgCtgGt33B.1.20.000026
ORF1ab/nsp765A65VgCtgTt33B.1.4270.000151
ORF1ab/nsp765A65VgCtgTt33B.1.5950.000783
ORF1ab/nsp765A65VgCtgTt33B.1.5960.000261
ORF1ab/nsp765A65VgCtgTt33C.160.003181
ORF1ab/nsp765A65VgCtgTt33P.1.140.000143
ORF1ab/nsp765A65IGCtATt220.111111
ORF1ab/nsp765A65VgCtgTt220.111111
ORF1ab/nsp765A65KGCTAAA220.111111
ORF1ab/nsp765A65KGCTAAA22All0
ORF1ab/nsp765A65del1gcTgc-12All0
ORF1ab/nsp765A65del1Gct-ct12All0
ORF1ab/nsp765A65VgCtgTt22AY.1000.000092
ORF1ab/nsp765A65AgcTgcC22AY.290.000032
ORF1ab/nsp765A65AgcTgcC22AY.30.00002
ORF1ab/nsp765A65AgcTgcC22AY.430.000009
ORF1ab/nsp765A65AgcTgcC22AY.440.000012
ORF1ab/nsp765A65SGctTct22AY.440.000012
ORF1ab/nsp765A65VgCtgTt22AY.610.00021
ORF1ab/nsp765A65AgcTgcA22AY.680.000547
ORF1ab/nsp765A65TGctAct22B.1.1.2860.005797
ORF1ab/nsp765A65AgcTgcA22B.1.1.630.000772
ORF1ab/nsp765A65VgCtgTt22B.1.177.860.000367
ORF1ab/nsp765A65TGctAct22B.1.20.000018
ORF1ab/nsp765A65VgCtgTt22B.1.2210.000142
ORF1ab/nsp765A65AgcTgcC22B.1.2580.000133
ORF1ab/nsp765A65VgCtgTt22B.1.258.110.000793
ORF1ab/nsp765A65VgCtgTt22P.10.000032
ORF1ab/nsp765A65AgcTgcC12P.20.000187
ORF1ab/nsp765A65AgcTgcG12P.20.000187
ORF1ab/nsp765A65SGctTct110.055556
ORF1ab/nsp765A65SGctTct11A0.000387
ORF1ab/nsp765A65VgCtgTt11A0.000387
ORF1ab/nsp765A65VgCtgTt11AE.80.000489
ORF1ab/nsp765A65YGCTTAC11All0
ORF1ab/nsp765A65del2GCt--t11All0
ORF1ab/nsp765A65VgCtgTt11AY.10.000396
ORF1ab/nsp765A65GgCtgGt11AY.1020.000027
ORF1ab/nsp765A65AgcTgcG11AY.1030.000006
ORF1ab/nsp765A65AgcTgcC11AY.1040.001984
ORF1ab/nsp765A65VgCtgTt11AY.1170.000085
ORF1ab/nsp765A65AgcTgcC11AY.120.10.000321
ORF1ab/nsp765A65AgcTgcC11AY.200.000039
ORF1ab/nsp765A65AgcTgcC11AY.260.000028
ORF1ab/nsp765A65PGctCct11AY.30.00001
ORF1ab/nsp765A65VgCtgTt11AY.390.000025
ORF1ab/nsp765A65GgCtgGt11AY.40.000002
ORF1ab/nsp765A65VgCtgTt11AY.4.20.000022
ORF1ab/nsp765A65AgcTgcC11AY.4.20.000022
ORF1ab/nsp765A65GgCtgGt11AY.400.000964
ORF1ab/nsp765A65delGCT---11AY.430.000004
ORF1ab/nsp765A65YGCTTAC11AY.440.000006
ORF1ab/nsp765A65VgCtgTt11AY.450.000122
ORF1ab/nsp765A65AgcTgcC11AY.450.000122
ORF1ab/nsp765A65SGctTct11AY.46.60.000072
ORF1ab/nsp765A65AgcTgcC11AY.50.000021
ORF1ab/nsp765A65SGctTct11AY.50.000021
ORF1ab/nsp765A65VgCtgTt11AY.50.000021
ORF1ab/nsp765A65AgcTgcG11AY.540.000095
ORF1ab/nsp765A65TGctAct11AY.610.000105
ORF1ab/nsp765A65AgcTgcC11AY.610.000105
ORF1ab/nsp765A65VgCtgTt11AY.750.000056
ORF1ab/nsp765A65AgcTgcC11AY.840.000437
ORF1ab/nsp765A65VgCtgTt11AY.840.000437
ORF1ab/nsp765A65AgcTgcG11AY.9.20.000037
ORF1ab/nsp765A65TGctAct11AY.9.20.000037
ORF1ab/nsp765A65AgcTgcC11AY.920.000287
ORF1ab/nsp765A65VgCtgTt11AY.98.10.000048
ORF1ab/nsp765A65SGctTct11B.10.000009
ORF1ab/nsp765A65delGCT---11B.10.000009
ORF1ab/nsp765A65GgCtgGt11B.10.000009
ORF1ab/nsp765A65PGctCct11B.10.000009
ORF1ab/nsp765A65AgcTgcC11B.1.10.000018
ORF1ab/nsp765A65DgCtgAt11B.1.1.1480.008772
ORF1ab/nsp765A65VgCtgTt11B.1.1.2070.001182
ORF1ab/nsp765A65VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp765A65VgCtgTt11B.1.1.330.000421
ORF1ab/nsp765A65VgCtgTt11B.1.1.3850.004464
ORF1ab/nsp765A65VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp765A65delGCT---11B.1.1.4480.002033
ORF1ab/nsp765A65PGctCct11B.1.1.70.000001
ORF1ab/nsp765A65VgCtgTt11B.1.1.80.003584
ORF1ab/nsp765A65AgcTgcC11B.1.1600.000031
ORF1ab/nsp765A65PGctCct11B.1.160.120.00641
ORF1ab/nsp765A65VgCtgTt11B.1.160.160.000929
ORF1ab/nsp765A65VgCtgTt11B.1.160.170.001701
ORF1ab/nsp765A65del1Gct-ct11B.1.1770.000013
ORF1ab/nsp765A65VgCtgTt11B.1.177.200.001517
ORF1ab/nsp765A65VgCtgTt11B.1.177.330.001645
ORF1ab/nsp765A65VgCtgTt11B.1.177.400.005155
ORF1ab/nsp765A65VgCtgTt11B.1.177.730.000566
ORF1ab/nsp765A65delGCT---11B.1.177.830.001481
ORF1ab/nsp765A65SGctTct11B.1.177.830.001481
ORF1ab/nsp765A65VgCtgTt11B.1.177.90.001332
ORF1ab/nsp765A65del1gcTgc-11B.1.20.000009
ORF1ab/nsp765A65del2GCt--t11B.1.20.000009
ORF1ab/nsp765A65SGctTct11B.1.20.000009
ORF1ab/nsp765A65AgcTgcG11B.1.2210.000071
ORF1ab/nsp765A65delGCT---11B.1.2580.000067
ORF1ab/nsp765A65VgCtgTt11B.1.258.50.008772
ORF1ab/nsp765A65VgCtgTt11B.1.3240.001605
ORF1ab/nsp765A65VgCtgTt11B.1.3460.001311
ORF1ab/nsp765A65AgcTgcC11B.1.351.20.000303
ORF1ab/nsp765A65SGctTct11B.1.360.000146
ORF1ab/nsp765A65VgCtgTt11B.1.360.000146
ORF1ab/nsp765A65TGctAct11B.1.4290.000024
ORF1ab/nsp765A65AgcTgcC11B.1.4290.000024
ORF1ab/nsp765A65VgCtgTt11B.1.4700.001404
ORF1ab/nsp765A65AgcTgcC11B.1.4740.001901
ORF1ab/nsp765A65VgCtgTt11B.1.4800.002488
ORF1ab/nsp765A65VgCtgTt11B.1.5710.009709
ORF1ab/nsp765A65AgcTgcC11B.1.5950.000261
ORF1ab/nsp765A65VgCtgTt11B.1.5990.00365
ORF1ab/nsp765A65VgCtgTt11B.1.6090.000479
ORF1ab/nsp765A65VgCtgTt11B.1.617.10.000129
ORF1ab/nsp765A65SGctTct11B.1.617.20.000004
ORF1ab/nsp765A65AgcTgcC11B.1.6210.000089
ORF1ab/nsp765A65VgCtgTt11B.1.6210.000089
ORF1ab/nsp765A65TGctAct11B.1.6210.000089
ORF1ab/nsp765A65AgcTgcG11B.280.003279
ORF1ab/nsp765A65AgcTgcC11B.400.000364
ORF1ab/nsp765A65IGCTATC11C.170.055556
ORF1ab/nsp765A65AgcTgcC11C.370.000116
ORF1ab/nsp765A65GgCtgGt11C.37.10.002618
ORF1ab/nsp765A65PGctCct11D.20.000075
ORF1ab/nsp765A65delGCT---11N.40.004255
ORF1ab/nsp765A65AgcTgcC11P.10.000016
ORF1ab/nsp765A65PGctCct11P.10.000016
ORF1ab/nsp765A65VgCtgTt11P.20.000187
ORF1ab/nsp765A65VgCtgTt11Q.40.000455
ORF1ab/nsp765A65VgCtgTt11Q.80.000165
ORF1ab/nsp765A65VgCtgTt11R.10.00009