CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp7 | 63 | Q63H | Q3922H | nonsyn | caG | caT | 1722 | 1703 | 0.988966 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63H | Q3922H | nonsyn | caG | caC | 1722 | 19 | 0.0110337 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63R | Q3922R | nonsyn | cAg | cGg | 1608 | 1608 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63Q | Q3922Q | syn | caG | caA | 380 | 380 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63del | Q3922del | del | CAG | --- | 25 | 25 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63P | Q3922P | nonsyn | cAg | cCg | 20 | 19 | 0.95 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63P | Q3922P | nonsyn | cAG | cCA | 20 | 1 | 0.05 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63K | Q3922K | nonsyn | Cag | Aag | 16 | 14 | 0.875 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63K | Q3922K | nonsyn | CaG | AaA | 16 | 2 | 0.125 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63X | Q3922X | nonsyn | Cag | Tag | 13 | 13 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63E | Q3922E | nonsyn | Cag | Gag | 7 | 7 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63del1 | Q3922del1 | del | caG | ca- | 4 | 4 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63L | Q3922L | nonsyn | cAg | cTg | 4 | 2 | 0.5 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63L | Q3922L | nonsyn | CAG | TTA | 4 | 2 | 0.5 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63W | Q3922W | nonsyn | CAg | TGg | 1 | 1 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63A | Q3922A | nonsyn | CAG | GCA | 1 | 1 | 1 | 12029-12031 |
ORF1ab/nsp7 | 63 | Q63G | Q3922G | nonsyn | CAG | GGT | 1 | 1 | 1 | 12029-12031 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1703 | 1722 | All | 0.000326 |
ORF1ab/nsp7 | 63 | Q63H | caG | caC | 19 | 1722 | All | 0.000004 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1608 | 1608 | All | 0.000308 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1176 | 1176 | B.1.637 | 0.085934 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 794 | 794 | AY.43 | 0.003518 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 380 | 380 | All | 0.000073 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 284 | 284 | AY.118 | 0.017792 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 176 | 176 | B.1.526 | 0.004137 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 128 | 128 | AY.4 | 0.000199 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 82 | 94 | B.1.1.7 | 0.000073 |
ORF1ab/nsp7 | 63 | Q63H | caG | caC | 12 | 94 | B.1.1.7 | 0.000011 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 90 | 90 | AY.44 | 0.000548 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 68 | 68 | B.1.131 | 0.596491 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 63 | 63 | AY.4 | 0.000098 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 62 | 62 | AY.44 | 0.000377 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 55 | 55 | AY.102 | 0.001458 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 53 | 53 | AY.3 | 0.000527 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 47 | 47 | B.1.177.75 | 0.048907 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 36 | 36 | B.1.351 | 0.00107 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 35 | 35 | B.1 | 0.000321 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 25 | 25 | All | 0.000005 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 19 | 20 | All | 0.000004 |
ORF1ab/nsp7 | 63 | Q63P | cAG | cCA | 1 | 20 | All | 0 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 18 | 18 | B.1.36.26 | 0.051429 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 14 | 16 | All | 0.000003 |
ORF1ab/nsp7 | 63 | Q63K | CaG | AaA | 2 | 16 | All | 0 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 10 | 16 | B.1.2 | 0.000088 |
ORF1ab/nsp7 | 63 | Q63H | caG | caC | 6 | 16 | B.1.2 | 0.000053 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 13 | 13 | All | 0.000002 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 8 | 8 | B.1.366 | 0.039024 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp7 | 63 | Q63E | Cag | Gag | 7 | 7 | All | 0.000001 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp7 | 63 | Q63E | Cag | Gag | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 5 | 5 | B.1.570 | 0.014706 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 5 | 5 | C.36.2 | 0.172414 |
ORF1ab/nsp7 | 63 | Q63del1 | caG | ca- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp7 | 63 | Q63L | cAg | cTg | 2 | 4 | All | 0 |
ORF1ab/nsp7 | 63 | Q63L | CAG | TTA | 2 | 4 | All | 0 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 3 | 3 | B.1.36.36 | 0.001806 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp7 | 63 | Q63H | caG | caC | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp7 | 63 | Q63L | CAG | TTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 63 | Q63K | CaG | AaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63del1 | caG | ca- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp7 | 63 | Q63P | cAG | cCA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 1 | 0.055556 | |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp7 | 63 | Q63G | CAG | GGT | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 63 | Q63A | CAG | GCA | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 63 | Q63W | CAg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp7 | 63 | Q63L | cAg | cTg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63E | Cag | Gag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 63 | Q63L | cAg | cTg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp7 | 63 | Q63del1 | caG | ca- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp7 | 63 | Q63G | CAG | GGT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63A | CAG | GCA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp7 | 63 | Q63del1 | caG | ca- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp7 | 63 | Q63E | Cag | Gag | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 63 | Q63K | Cag | Aag | 1 | 1 | B.1.69 | 0.035714 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp7 | 63 | Q63X | Cag | Tag | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp7 | 63 | Q63R | cAg | cGg | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp7 | 63 | Q63del | CAG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp7 | 63 | Q63Q | caG | caA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp7 | 63 | Q63W | CAg | TGg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp7 | 63 | Q63H | caG | caT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp7 | 63 | Q63P | cAg | cCg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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