CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 63

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp763Q63HQ3922HnonsyncaGcaT172217030.98896612029-12031
ORF1ab/nsp763Q63HQ3922HnonsyncaGcaC1722190.011033712029-12031
ORF1ab/nsp763Q63RQ3922RnonsyncAgcGg16081608112029-12031
ORF1ab/nsp763Q63QQ3922QsyncaGcaA380380112029-12031
ORF1ab/nsp763Q63delQ3922deldelCAG---2525112029-12031
ORF1ab/nsp763Q63PQ3922PnonsyncAgcCg20190.9512029-12031
ORF1ab/nsp763Q63PQ3922PnonsyncAGcCA2010.0512029-12031
ORF1ab/nsp763Q63KQ3922KnonsynCagAag16140.87512029-12031
ORF1ab/nsp763Q63KQ3922KnonsynCaGAaA1620.12512029-12031
ORF1ab/nsp763Q63XQ3922XnonsynCagTag1313112029-12031
ORF1ab/nsp763Q63EQ3922EnonsynCagGag77112029-12031
ORF1ab/nsp763Q63del1Q3922del1delcaGca-44112029-12031
ORF1ab/nsp763Q63LQ3922LnonsyncAgcTg420.512029-12031
ORF1ab/nsp763Q63LQ3922LnonsynCAGTTA420.512029-12031
ORF1ab/nsp763Q63WQ3922WnonsynCAgTGg11112029-12031
ORF1ab/nsp763Q63AQ3922AnonsynCAGGCA11112029-12031
ORF1ab/nsp763Q63GQ3922GnonsynCAGGGT11112029-12031

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp763Q63HcaGcaT17031722All0.000326
ORF1ab/nsp763Q63HcaGcaC191722All0.000004
ORF1ab/nsp763Q63RcAgcGg16081608All0.000308
ORF1ab/nsp763Q63RcAgcGg11761176B.1.6370.085934
ORF1ab/nsp763Q63HcaGcaT794794AY.430.003518
ORF1ab/nsp763Q63QcaGcaA380380All0.000073
ORF1ab/nsp763Q63HcaGcaT284284AY.1180.017792
ORF1ab/nsp763Q63RcAgcGg176176B.1.5260.004137
ORF1ab/nsp763Q63HcaGcaT128128AY.40.000199
ORF1ab/nsp763Q63HcaGcaT8294B.1.1.70.000073
ORF1ab/nsp763Q63HcaGcaC1294B.1.1.70.000011
ORF1ab/nsp763Q63HcaGcaT9090AY.440.000548
ORF1ab/nsp763Q63QcaGcaA6868B.1.1310.596491
ORF1ab/nsp763Q63RcAgcGg6363AY.40.000098
ORF1ab/nsp763Q63QcaGcaA6262AY.440.000377
ORF1ab/nsp763Q63QcaGcaA5555AY.1020.001458
ORF1ab/nsp763Q63HcaGcaT5353AY.30.000527
ORF1ab/nsp763Q63HcaGcaT4747B.1.177.750.048907
ORF1ab/nsp763Q63QcaGcaA4242B.1.617.20.000158
ORF1ab/nsp763Q63HcaGcaT3636B.1.3510.00107
ORF1ab/nsp763Q63RcAgcGg3535B.10.000321
ORF1ab/nsp763Q63QcaGcaA3434B.1.1.70.00003
ORF1ab/nsp763Q63delCAG---2525All0.000005
ORF1ab/nsp763Q63RcAgcGg2424B.1.1.70.000021
ORF1ab/nsp763Q63PcAgcCg1920All0.000004
ORF1ab/nsp763Q63PcAGcCA120All0
ORF1ab/nsp763Q63HcaGcaT2020B.1.617.20.000075
ORF1ab/nsp763Q63HcaGcaT1818B.1.36.260.051429
ORF1ab/nsp763Q63KCagAag1416All0.000003
ORF1ab/nsp763Q63KCaGAaA216All0
ORF1ab/nsp763Q63HcaGcaT1016B.1.20.000088
ORF1ab/nsp763Q63HcaGcaC616B.1.20.000053
ORF1ab/nsp763Q63RcAgcGg1515AY.250.00009
ORF1ab/nsp763Q63HcaGcaT1414AY.290.000221
ORF1ab/nsp763Q63XCagTag1313All0.000002
ORF1ab/nsp763Q63RcAgcGg1313AY.440.000079
ORF1ab/nsp763Q63QcaGcaA1111AY.250.000066
ORF1ab/nsp763Q63RcAgcGg1111B.1.617.20.000041
ORF1ab/nsp763Q63HcaGcaT1010AY.390.000247
ORF1ab/nsp763Q63QcaGcaA1010B.10.000092
ORF1ab/nsp763Q63RcAgcGg99AY.430.00004
ORF1ab/nsp763Q63QcaGcaA88B.1.1.2160.007124
ORF1ab/nsp763Q63HcaGcaT88B.1.1770.000105
ORF1ab/nsp763Q63HcaGcaT88B.1.3660.039024
ORF1ab/nsp763Q63QcaGcaA88B.1.5260.000188
ORF1ab/nsp763Q63ECagGag77All0.000001
ORF1ab/nsp763Q63HcaGcaT77AY.1020.000186
ORF1ab/nsp763Q63HcaGcaT77B.10.000064
ORF1ab/nsp763Q63RcAgcGg77P.10.00011
ORF1ab/nsp763Q63HcaGcaT66AY.1030.000037
ORF1ab/nsp763Q63QcaGcaA66AY.390.000148
ORF1ab/nsp763Q63RcAgcGg66AY.390.000148
ORF1ab/nsp763Q63HcaGcaT66B.1.1.5190.000238
ORF1ab/nsp763Q63RcAgcGg66B.1.20.000053
ORF1ab/nsp763Q63RcAgcGg55AY.1190.000177
ORF1ab/nsp763Q63HcaGcaT55AY.250.00003
ORF1ab/nsp763Q63QcaGcaA55AY.430.000022
ORF1ab/nsp763Q63QcaGcaA55AY.7.10.000564
ORF1ab/nsp763Q63RcAgcGg55B.1.1.2140.000277
ORF1ab/nsp763Q63delCAG---55B.1.1.70.000004
ORF1ab/nsp763Q63ECagGag55B.1.2320.002687
ORF1ab/nsp763Q63QcaGcaA55B.1.5700.014706
ORF1ab/nsp763Q63QcaGcaA55C.36.20.172414
ORF1ab/nsp763Q63del1caGca-44All0.000001
ORF1ab/nsp763Q63LcAgcTg24All0
ORF1ab/nsp763Q63LCAGTTA24All0
ORF1ab/nsp763Q63HcaGcaT44AY.1130.00057
ORF1ab/nsp763Q63PcAgcCg44AY.260.000113
ORF1ab/nsp763Q63RcAgcGg44AY.330.000267
ORF1ab/nsp763Q63KCagAag44AY.40.000006
ORF1ab/nsp763Q63QcaGcaA44AY.40.000006
ORF1ab/nsp763Q63HcaGcaT44AY.690.000747
ORF1ab/nsp763Q63HcaGcaT44AY.750.000224
ORF1ab/nsp763Q63QcaGcaA44B.1.177.440.002076
ORF1ab/nsp763Q63HcaGcaT44P.10.000063
ORF1ab/nsp763Q63RcAgcGg33A.2.50.001497
ORF1ab/nsp763Q63QcaGcaA33AY.1090.002219
ORF1ab/nsp763Q63HcaGcaT33AY.1170.000254
ORF1ab/nsp763Q63QcaGcaA33AY.1190.000106
ORF1ab/nsp763Q63RcAgcGg33AY.160.001139
ORF1ab/nsp763Q63PcAgcCg33AY.250.000018
ORF1ab/nsp763Q63KCagAag33AY.290.000047
ORF1ab/nsp763Q63RcAgcGg33AY.4.20.000065
ORF1ab/nsp763Q63HcaGcaT33AY.450.000365
ORF1ab/nsp763Q63RcAgcGg33AY.470.000093
ORF1ab/nsp763Q63QcaGcaA33B.1.1.3060.001315
ORF1ab/nsp763Q63delCAG---33B.1.177.600.000655
ORF1ab/nsp763Q63RcAgcGg33B.1.177.70.000495
ORF1ab/nsp763Q63HcaGcaT33B.1.36.360.001806
ORF1ab/nsp763Q63QcaGcaA33B.1.5650.002431
ORF1ab/nsp763Q63HcaGcaT23B.1.5960.000174
ORF1ab/nsp763Q63HcaGcaC13B.1.5960.000087
ORF1ab/nsp763Q63PcAgcCg33B.1.617.20.000011
ORF1ab/nsp763Q63delCAG---33B.1.617.20.000011
ORF1ab/nsp763Q63QcaGcaA33C.370.000348
ORF1ab/nsp763Q63RcAgcGg33P.1.170.000485
ORF1ab/nsp763Q63LCAGTTA220.111111
ORF1ab/nsp763Q63KCaGAaA220.111111
ORF1ab/nsp763Q63delCAG---220.111111
ORF1ab/nsp763Q63RcAgcGg22AY.1020.000053
ORF1ab/nsp763Q63HcaGcaT22AY.1110.000366
ORF1ab/nsp763Q63HcaGcaT22AY.1160.000574
ORF1ab/nsp763Q63HcaGcaT22AY.140.000176
ORF1ab/nsp763Q63RcAgcGg22AY.150.004444
ORF1ab/nsp763Q63KCagAag22AY.200.000078
ORF1ab/nsp763Q63HcaGcaT22AY.230.000139
ORF1ab/nsp763Q63RcAgcGg22AY.260.000057
ORF1ab/nsp763Q63RcAgcGg22AY.30.00002
ORF1ab/nsp763Q63PcAgcCg22AY.40.000003
ORF1ab/nsp763Q63delCAG---22AY.430.000009
ORF1ab/nsp763Q63del1caGca-22AY.440.000012
ORF1ab/nsp763Q63QcaGcaA22AY.460.000208
ORF1ab/nsp763Q63PcAGcCA12B.10.000009
ORF1ab/nsp763Q63PcAgcCg12B.10.000009
ORF1ab/nsp763Q63RcAgcGg22B.1.10.000036
ORF1ab/nsp763Q63QcaGcaA22B.1.1.10.000653
ORF1ab/nsp763Q63HcaGcaT22B.1.1.3980.006452
ORF1ab/nsp763Q63RcAgcGg22B.1.1.5070.017391
ORF1ab/nsp763Q63QcaGcaA22B.1.1.5190.000079
ORF1ab/nsp763Q63XCagTag22B.1.1.70.000002
ORF1ab/nsp763Q63XCagTag22B.1.20.000018
ORF1ab/nsp763Q63HcaGcaT22B.1.36.310.003503
ORF1ab/nsp763Q63QcaGcaA22B.1.3890.002004
ORF1ab/nsp763Q63RcAgcGg22B.1.4290.000047
ORF1ab/nsp763Q63KCagAag22B.1.617.20.000008
ORF1ab/nsp763Q63HcaGcaT22C.370.000232
ORF1ab/nsp763Q63HcaGcaT22P.1.150.000465
ORF1ab/nsp763Q63RcAgcGg22P.20.000373
ORF1ab/nsp763Q63PcAgcCg110.055556
ORF1ab/nsp763Q63HcaGcaT11A.2.50.000499
ORF1ab/nsp763Q63GCAGGGT11All0
ORF1ab/nsp763Q63ACAGGCA11All0
ORF1ab/nsp763Q63WCAgTGg11All0
ORF1ab/nsp763Q63HcaGcaT11AY.1000.000046
ORF1ab/nsp763Q63QcaGcaA11AY.1000.000046
ORF1ab/nsp763Q63QcaGcaA11AY.1010.00049
ORF1ab/nsp763Q63HcaGcaT11AY.1010.00049
ORF1ab/nsp763Q63QcaGcaA11AY.1160.000287
ORF1ab/nsp763Q63HcaGcaT11AY.116.10.000311
ORF1ab/nsp763Q63QcaGcaA11AY.1210.000135
ORF1ab/nsp763Q63HcaGcaT11AY.160.00038
ORF1ab/nsp763Q63PcAgcCg11AY.160.00038
ORF1ab/nsp763Q63HcaGcaT11AY.200.000039
ORF1ab/nsp763Q63RcAgcGg11AY.23.10.000417
ORF1ab/nsp763Q63XCagTag11AY.250.000006
ORF1ab/nsp763Q63HcaGcaT11AY.260.000028
ORF1ab/nsp763Q63delCAG---11AY.290.000016
ORF1ab/nsp763Q63QcaGcaA11AY.3.10.000085
ORF1ab/nsp763Q63PcAgcCg11AY.330.000067
ORF1ab/nsp763Q63HcaGcaT11AY.330.000067
ORF1ab/nsp763Q63HcaGcaT11AY.34.10.00051
ORF1ab/nsp763Q63delCAG---11AY.40.000002
ORF1ab/nsp763Q63RcAgcGg11AY.4.50.000107
ORF1ab/nsp763Q63QcaGcaA11AY.420.00004
ORF1ab/nsp763Q63HcaGcaT11AY.420.00004
ORF1ab/nsp763Q63PcAgcCg11AY.440.000006
ORF1ab/nsp763Q63QcaGcaA11AY.450.000122
ORF1ab/nsp763Q63RcAgcGg11AY.46.60.000072
ORF1ab/nsp763Q63HcaGcaT11AY.470.000031
ORF1ab/nsp763Q63PcAgcCg11AY.50.000021
ORF1ab/nsp763Q63HcaGcaT11AY.50.000021
ORF1ab/nsp763Q63RcAgcGg11AY.50.000021
ORF1ab/nsp763Q63QcaGcaA11AY.5.30.000337
ORF1ab/nsp763Q63HcaGcaT11AY.520.000814
ORF1ab/nsp763Q63QcaGcaA11AY.60.000041
ORF1ab/nsp763Q63delCAG---11AY.660.00107
ORF1ab/nsp763Q63QcaGcaA11AY.690.000187
ORF1ab/nsp763Q63QcaGcaA11AY.740.000116
ORF1ab/nsp763Q63delCAG---11AY.750.000056
ORF1ab/nsp763Q63LcAgcTg11AY.75.10.00018
ORF1ab/nsp763Q63RcAgcGg11AY.800.001129
ORF1ab/nsp763Q63HcaGcaT11AY.9.10.000084
ORF1ab/nsp763Q63QcaGcaA11AY.9.20.000037
ORF1ab/nsp763Q63QcaGcaA11AY.990.001049
ORF1ab/nsp763Q63QcaGcaA11AY.99.10.001553
ORF1ab/nsp763Q63RcAgcGg11B0.000128
ORF1ab/nsp763Q63QcaGcaA11B0.000128
ORF1ab/nsp763Q63HcaGcaT11B0.000128
ORF1ab/nsp763Q63XCagTag11B.10.000009
ORF1ab/nsp763Q63delCAG---11B.10.000009
ORF1ab/nsp763Q63KCagAag11B.10.000009
ORF1ab/nsp763Q63ECagGag11B.10.000009
ORF1ab/nsp763Q63XCagTag11B.1.10.000018
ORF1ab/nsp763Q63QcaGcaA11B.1.10.000018
ORF1ab/nsp763Q63HcaGcaT11B.1.10.000018
ORF1ab/nsp763Q63LcAgcTg11B.1.10.000018
ORF1ab/nsp763Q63HcaGcaT11B.1.1.2140.000055
ORF1ab/nsp763Q63HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp763Q63QcaGcaA11B.1.1.3170.000412
ORF1ab/nsp763Q63RcAgcGg11B.1.1.3290.003846
ORF1ab/nsp763Q63HcaGcaT11B.1.1.3440.010753
ORF1ab/nsp763Q63XCagTag11B.1.1.3780.007299
ORF1ab/nsp763Q63RcAgcGg11B.1.1.3850.004464
ORF1ab/nsp763Q63RcAgcGg11B.1.1.4320.001266
ORF1ab/nsp763Q63delCAG---11B.1.1.4480.002033
ORF1ab/nsp763Q63RcAgcGg11B.1.1.4670.019231
ORF1ab/nsp763Q63HcaGcaT11B.1.1.5230.001563
ORF1ab/nsp763Q63del1caGca-11B.1.1.70.000001
ORF1ab/nsp763Q63XCagTag11B.1.1.700.000341
ORF1ab/nsp763Q63QcaGcaA11B.1.1600.000031
ORF1ab/nsp763Q63XCagTag11B.1.1700.00431
ORF1ab/nsp763Q63HcaGcaT11B.1.177.160.000664
ORF1ab/nsp763Q63RcAgcGg11B.1.177.230.003236
ORF1ab/nsp763Q63HcaGcaT11B.1.177.440.000519
ORF1ab/nsp763Q63HcaGcaT11B.1.177.720.00339
ORF1ab/nsp763Q63GCAGGGT11B.1.177.830.001481
ORF1ab/nsp763Q63QcaGcaA11B.1.20.000009
ORF1ab/nsp763Q63ACAGGCA11B.1.20.000009
ORF1ab/nsp763Q63XCagTag11B.1.2060.000816
ORF1ab/nsp763Q63del1caGca-11B.1.214.20.0006
ORF1ab/nsp763Q63RcAgcGg11B.1.214.20.0006
ORF1ab/nsp763Q63RcAgcGg11B.1.220.001318
ORF1ab/nsp763Q63QcaGcaA11B.1.2410.000812
ORF1ab/nsp763Q63QcaGcaA11B.1.2520.006623
ORF1ab/nsp763Q63RcAgcGg11B.1.2580.000067
ORF1ab/nsp763Q63delCAG---11B.1.2580.000067
ORF1ab/nsp763Q63delCAG---11B.1.258.30.001675
ORF1ab/nsp763Q63RcAgcGg11B.1.3510.00003
ORF1ab/nsp763Q63QcaGcaA11B.1.3510.00003
ORF1ab/nsp763Q63QcaGcaA11B.1.360.000146
ORF1ab/nsp763Q63QcaGcaA11B.1.36.260.002857
ORF1ab/nsp763Q63HcaGcaT11B.1.4090.000781
ORF1ab/nsp763Q63RcAgcGg11B.1.416.10.001563
ORF1ab/nsp763Q63HcaGcaT11B.1.4290.000024
ORF1ab/nsp763Q63KCagAag11B.1.4290.000024
ORF1ab/nsp763Q63RcAgcGg11B.1.438.10.000107
ORF1ab/nsp763Q63HcaGcaT11B.1.4530.003236
ORF1ab/nsp763Q63ECagGag11B.1.5770.000687
ORF1ab/nsp763Q63XCagTag11B.1.617.20.000004
ORF1ab/nsp763Q63KCagAag11B.1.690.035714
ORF1ab/nsp763Q63delCAG---11C.170.055556
ORF1ab/nsp763Q63XCagTag11C.360.000911
ORF1ab/nsp763Q63RcAgcGg11C.360.000911
ORF1ab/nsp763Q63RcAgcGg11C.80.004464
ORF1ab/nsp763Q63delCAG---11N.40.004255
ORF1ab/nsp763Q63QcaGcaA11P.10.000016
ORF1ab/nsp763Q63WCAgTGg11Q.30.000145
ORF1ab/nsp763Q63HcaGcaT11Q.80.000165
ORF1ab/nsp763Q63PcAgcCg11R.10.00009