CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 56

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp756L56FL3915FnonsynCttTtt73747374112008-12010
ORF1ab/nsp756L56LL3915LsynctTctC6835320.77891712008-12010
ORF1ab/nsp756L56LL3915LsynctTctG6831290.18887312008-12010
ORF1ab/nsp756L56LL3915LsynctTctA683220.032210812008-12010
ORF1ab/nsp756L56IL3915InonsynCttAtt7676112008-12010
ORF1ab/nsp756L56delL3915deldelCTT---2222112008-12010
ORF1ab/nsp756L56VL3915VnonsynCttGtt2020112008-12010
ORF1ab/nsp756L56PL3915PnonsyncTtcCt1414112008-12010
ORF1ab/nsp756L56del1L3915del1delcTtc-t740.57142912008-12010
ORF1ab/nsp756L56del1L3915del1delCtt-tt720.28571412008-12010
ORF1ab/nsp756L56del1L3915del1delctTct-710.14285712008-12010
ORF1ab/nsp756L56RL3915RnonsyncTtcGt33112008-12010
ORF1ab/nsp756L56CL3915CnonsynCTtTGt22112008-12010
ORF1ab/nsp756L56GL3915GnonsynCTtGGt22112008-12010
ORF1ab/nsp756L56del2L3915del2delcTTc--22112008-12010
ORF1ab/nsp756L56HL3915HnonsyncTtcAt11112008-12010
ORF1ab/nsp756L56QL3915QnonsyncTTcAA11112008-12010

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp756L56FCttTtt73747374All0.00141
ORF1ab/nsp756L56FCttTtt39113911AY.50.080759
ORF1ab/nsp756L56FCttTtt977977B.1.3510.029043
ORF1ab/nsp756L56FCttTtt727727B.1.1.70.000651
ORF1ab/nsp756L56LctTctC532683All0.000102
ORF1ab/nsp756L56LctTctG129683All0.000025
ORF1ab/nsp756L56LctTctA22683All0.000004
ORF1ab/nsp756L56FCttTtt295295AY.9.10.024699
ORF1ab/nsp756L56FCttTtt262262P.40.996198
ORF1ab/nsp756L56LctTctC215216B.1.2580.014308
ORF1ab/nsp756L56LctTctA1216B.1.2580.000067
ORF1ab/nsp756L56LctTctG105161AY.430.000465
ORF1ab/nsp756L56LctTctC56161AY.430.000248
ORF1ab/nsp756L56FCttTtt120120AY.5.40.033204
ORF1ab/nsp756L56FCttTtt108108AY.40.000168
ORF1ab/nsp756L56ICttAtt7676All0.000015
ORF1ab/nsp756L56FCttTtt7575B.1.617.20.000282
ORF1ab/nsp756L56FCttTtt7575P.10.001182
ORF1ab/nsp756L56LctTctC4263B.1.1.70.000038
ORF1ab/nsp756L56LctTctA1263B.1.1.70.000011
ORF1ab/nsp756L56LctTctG963B.1.1.70.000008
ORF1ab/nsp756L56LctTctC5155B.1.10.000925
ORF1ab/nsp756L56LctTctA455B.1.10.000073
ORF1ab/nsp756L56FCttTtt4646B.1.2430.003201
ORF1ab/nsp756L56FCttTtt3737AY.250.000223
ORF1ab/nsp756L56FCttTtt3737AY.620.016122
ORF1ab/nsp756L56FCttTtt3434B.10.000311
ORF1ab/nsp756L56LctTctC3234B.1.617.20.00012
ORF1ab/nsp756L56LctTctG234B.1.617.20.000008
ORF1ab/nsp756L56FCttTtt3434B.1.6390.73913
ORF1ab/nsp756L56FCttTtt3333B.1.10.000599
ORF1ab/nsp756L56ICttAtt3333B.1.1.70.00003
ORF1ab/nsp756L56FCttTtt2929B.1.1.3170.011939
ORF1ab/nsp756L56FCttTtt2424AY.440.000146
ORF1ab/nsp756L56FCttTtt2424B.1.5260.000564
ORF1ab/nsp756L56LctTctC2323AY.40.000036
ORF1ab/nsp756L56FCttTtt2323AY.400.022179
ORF1ab/nsp756L56delCTT---2222All0.000004
ORF1ab/nsp756L56FCttTtt2222AY.430.000097
ORF1ab/nsp756L56VCttGtt2020All0.000004
ORF1ab/nsp756L56FCttTtt2020B.1.3670.015848
ORF1ab/nsp756L56FCttTtt2020B.1.4270.00101
ORF1ab/nsp756L56LctTctC1818B.1.3510.000535
ORF1ab/nsp756L56FCttTtt1717B.1.1770.000224
ORF1ab/nsp756L56LctTctC1717P.1.150.00395
ORF1ab/nsp756L56FCttTtt1616B.1.20.000141
ORF1ab/nsp756L56FCttTtt1616B.1.2210.001137
ORF1ab/nsp756L56FCttTtt1515AY.1030.000093
ORF1ab/nsp756L56PcTtcCt1414All0.000003
ORF1ab/nsp756L56FCttTtt1414AY.5.30.004723
ORF1ab/nsp756L56FCttTtt1414B.1.1.5000.28
ORF1ab/nsp756L56FCttTtt1414B.1.1650.166667
ORF1ab/nsp756L56FCttTtt1212B.1.1.5190.000477
ORF1ab/nsp756L56FCttTtt1111AY.1060.003684
ORF1ab/nsp756L56FCttTtt1010AY.230.000697
ORF1ab/nsp756L56FCttTtt99AY.1000.000414
ORF1ab/nsp756L56FCttTtt99AY.1190.000318
ORF1ab/nsp756L56FCttTtt99AY.390.000222
ORF1ab/nsp756L56FCttTtt99B.1.4290.000212
ORF1ab/nsp756L56FCttTtt99P.1.140.00043
ORF1ab/nsp756L56LctTctC88AY.1030.00005
ORF1ab/nsp756L56LctTctC88AY.250.000048
ORF1ab/nsp756L56FCttTtt88AY.290.000126
ORF1ab/nsp756L56ICttAtt88AY.440.000049
ORF1ab/nsp756L56VCttGtt88B.1.1.70.000007
ORF1ab/nsp756L56del1cTtc-t47All0.000001
ORF1ab/nsp756L56del1Ctt-tt27All0
ORF1ab/nsp756L56del1ctTct-17All0
ORF1ab/nsp756L56LctTctC77AY.1000.000322
ORF1ab/nsp756L56FCttTtt77AY.1160.002007
ORF1ab/nsp756L56FCttTtt77AY.610.000733
ORF1ab/nsp756L56FCttTtt77B.1.1.10.002287
ORF1ab/nsp756L56FCttTtt77B.1.1600.000218
ORF1ab/nsp756L56VCttGtt77B.1.5170.002989
ORF1ab/nsp756L56FCttTtt66AY.4.20.00013
ORF1ab/nsp756L56FCttTtt66AY.750.000336
ORF1ab/nsp756L56delCTT---66B.1.1.70.000005
ORF1ab/nsp756L56FCttTtt66B.1.177.570.001686
ORF1ab/nsp756L56LctTctG56B.1.20.000044
ORF1ab/nsp756L56LctTctA16B.1.20.000009
ORF1ab/nsp756L56FCttTtt66Q.80.000989
ORF1ab/nsp756L56FCttTtt55AY.200.000194
ORF1ab/nsp756L56LctTctC55AY.440.00003
ORF1ab/nsp756L56FCttTtt55AY.450.000608
ORF1ab/nsp756L56FCttTtt55AY.590.002648
ORF1ab/nsp756L56FCttTtt55AY.9.20.000184
ORF1ab/nsp756L56FCttTtt55B.1.1.470.026738
ORF1ab/nsp756L56FCttTtt55B.1.1.5230.007812
ORF1ab/nsp756L56FCttTtt55B.1.2400.001078
ORF1ab/nsp756L56FCttTtt55B.1.3960.003529
ORF1ab/nsp756L56LctTctC45C.370.000464
ORF1ab/nsp756L56LctTctG15C.370.000116
ORF1ab/nsp756L56LctTctC44AY.1190.000141
ORF1ab/nsp756L56FCttTtt44AY.420.000161
ORF1ab/nsp756L56LctTctC34B.10.000027
ORF1ab/nsp756L56LctTctA14B.10.000009
ORF1ab/nsp756L56ICttAtt44B.1.10.000073
ORF1ab/nsp756L56FCttTtt44B.1.1.3060.001754
ORF1ab/nsp756L56FCttTtt44B.1.1.630.001543
ORF1ab/nsp756L56ICttAtt44B.1.160.260.009685
ORF1ab/nsp756L56LctTctG44B.1.5770.002749
ORF1ab/nsp756L56delCTT---44B.1.617.20.000015
ORF1ab/nsp756L56FCttTtt44B.1.6370.000292
ORF1ab/nsp756L56FCttTtt44D.20.0003
ORF1ab/nsp756L56FCttTtt44P.20.000747
ORF1ab/nsp756L56RcTtcGt33All0.000001
ORF1ab/nsp756L56FCttTtt33AY.1020.00008
ORF1ab/nsp756L56FCttTtt33AY.90.000203
ORF1ab/nsp756L56FCttTtt33AY.930.000819
ORF1ab/nsp756L56PcTtcCt33B.10.000027
ORF1ab/nsp756L56FCttTtt33B.1.2340.000396
ORF1ab/nsp756L56FCttTtt33B.1.2580.0002
ORF1ab/nsp756L56FCttTtt33B.1.6210.000266
ORF1ab/nsp756L56FCttTtt33C.370.000348
ORF1ab/nsp756L56LctTctC33P.1.170.000485
ORF1ab/nsp756L56GCTtGGt220.111111
ORF1ab/nsp756L56CCTtTGt220.111111
ORF1ab/nsp756L56RcTtcGt220.111111
ORF1ab/nsp756L56ICttAtt220.111111
ORF1ab/nsp756L56CCTtTGt22All0
ORF1ab/nsp756L56GCTtGGt22All0
ORF1ab/nsp756L56del2cTTc--22All0
ORF1ab/nsp756L56LctTctC22AY.1100.000225
ORF1ab/nsp756L56FCttTtt22AY.1110.000366
ORF1ab/nsp756L56FCttTtt22AY.1180.000125
ORF1ab/nsp756L56FCttTtt22AY.130.000322
ORF1ab/nsp756L56ICttAtt22AY.260.000057
ORF1ab/nsp756L56LctTctC22AY.260.000057
ORF1ab/nsp756L56FCttTtt22AY.30.00002
ORF1ab/nsp756L56LctTctC22AY.30.00002
ORF1ab/nsp756L56LctTctC22AY.340.000194
ORF1ab/nsp756L56FCttTtt22AY.370.000632
ORF1ab/nsp756L56ICttAtt22AY.40.000003
ORF1ab/nsp756L56delCTT---22AY.430.000009
ORF1ab/nsp756L56PcTtcCt22AY.440.000012
ORF1ab/nsp756L56LctTctC22AY.460.000208
ORF1ab/nsp756L56FCttTtt22AY.46.40.000329
ORF1ab/nsp756L56FCttTtt22AY.510.001818
ORF1ab/nsp756L56FCttTtt22AY.540.000191
ORF1ab/nsp756L56LctTctC22AY.60.000082
ORF1ab/nsp756L56FCttTtt22AY.700.000417
ORF1ab/nsp756L56FCttTtt22AY.980.000158
ORF1ab/nsp756L56FCttTtt22AY.990.002099
ORF1ab/nsp756L56FCttTtt22B.1.1.2220.000408
ORF1ab/nsp756L56VCttGtt22B.1.1.250.001137
ORF1ab/nsp756L56del1cTtc-t12B.1.1.70.000001
ORF1ab/nsp756L56del1Ctt-tt12B.1.1.70.000001
ORF1ab/nsp756L56FCttTtt22B.1.177.870.001456
ORF1ab/nsp756L56FCttTtt22B.1.2600.006689
ORF1ab/nsp756L56FCttTtt22B.1.3320.006993
ORF1ab/nsp756L56FCttTtt22B.1.4250.005988
ORF1ab/nsp756L56FCttTtt22B.1.466.20.000782
ORF1ab/nsp756L56del2cTTc--22B.1.617.20.000008
ORF1ab/nsp756L56ICttAtt22P.10.000032
ORF1ab/nsp756L56LctTctC22P.10.000032
ORF1ab/nsp756L56HcTtcAt110.055556
ORF1ab/nsp756L56LctTctC11A0.000387
ORF1ab/nsp756L56ICttAtt11A0.000387
ORF1ab/nsp756L56FCttTtt11A.190.009434
ORF1ab/nsp756L56LctTctC11A.2.5.20.001572
ORF1ab/nsp756L56HcTtcAt11All0
ORF1ab/nsp756L56QcTTcAA11All0
ORF1ab/nsp756L56ICttAtt11AY.1020.000027
ORF1ab/nsp756L56ICttAtt11AY.1030.000006
ORF1ab/nsp756L56FCttTtt11AY.1140.000231
ORF1ab/nsp756L56FCttTtt11AY.1210.000135
ORF1ab/nsp756L56FCttTtt11AY.16.10.00047
ORF1ab/nsp756L56LctTctC11AY.200.000039
ORF1ab/nsp756L56ICttAtt11AY.200.000039
ORF1ab/nsp756L56PcTtcCt11AY.230.00007
ORF1ab/nsp756L56FCttTtt11AY.23.10.000417
ORF1ab/nsp756L56PcTtcCt11AY.250.000006
ORF1ab/nsp756L56ICttAtt11AY.250.000006
ORF1ab/nsp756L56FCttTtt11AY.270.000065
ORF1ab/nsp756L56delCTT---11AY.290.000016
ORF1ab/nsp756L56FCttTtt11AY.29.10.000221
ORF1ab/nsp756L56ICttAtt11AY.30.00001
ORF1ab/nsp756L56FCttTtt11AY.3.10.000085
ORF1ab/nsp756L56LctTctC11AY.3.10.000085
ORF1ab/nsp756L56LctTctC11AY.320.000532
ORF1ab/nsp756L56ICttAtt11AY.350.000233
ORF1ab/nsp756L56LctTctC11AY.370.000316
ORF1ab/nsp756L56LctTctC11AY.390.000025
ORF1ab/nsp756L56FCttTtt11AY.39.10.00004
ORF1ab/nsp756L56delCTT---11AY.40.000002
ORF1ab/nsp756L56FCttTtt11AY.4.10.000737
ORF1ab/nsp756L56LctTctC11AY.4.20.000022
ORF1ab/nsp756L56ICttAtt11AY.4.20.000022
ORF1ab/nsp756L56FCttTtt11AY.4.40.000409
ORF1ab/nsp756L56ICttAtt11AY.430.000004
ORF1ab/nsp756L56delCTT---11AY.440.000006
ORF1ab/nsp756L56FCttTtt11AY.460.000104
ORF1ab/nsp756L56LctTctC11AY.46.40.000165
ORF1ab/nsp756L56LctTctC11AY.470.000031
ORF1ab/nsp756L56FCttTtt11AY.470.000031
ORF1ab/nsp756L56QcTTcAA11AY.50.000021
ORF1ab/nsp756L56del1Ctt-tt11AY.50.000021
ORF1ab/nsp756L56FCttTtt11AY.500.000799
ORF1ab/nsp756L56LctTctC11AY.550.000917
ORF1ab/nsp756L56FCttTtt11AY.60.000041
ORF1ab/nsp756L56delCTT---11AY.660.00107
ORF1ab/nsp756L56FCttTtt11AY.680.000274
ORF1ab/nsp756L56FCttTtt11AY.740.000116
ORF1ab/nsp756L56delCTT---11AY.750.000056
ORF1ab/nsp756L56LctTctG11AY.750.000056
ORF1ab/nsp756L56FCttTtt11AY.810.001992
ORF1ab/nsp756L56FCttTtt11AY.850.000427
ORF1ab/nsp756L56FCttTtt11AY.870.000833
ORF1ab/nsp756L56ICttAtt11AY.9.20.000037
ORF1ab/nsp756L56FCttTtt11AY.920.000287
ORF1ab/nsp756L56LctTctA11AY.920.000287
ORF1ab/nsp756L56LctTctC11AY.930.000273
ORF1ab/nsp756L56LctTctC11AY.980.000079
ORF1ab/nsp756L56FCttTtt11AY.98.10.000048
ORF1ab/nsp756L56FCttTtt11AY.99.10.001553
ORF1ab/nsp756L56LctTctC11AY.99.20.000092
ORF1ab/nsp756L56FCttTtt11AY.99.20.000092
ORF1ab/nsp756L56FCttTtt11B0.000128
ORF1ab/nsp756L56del1cTtc-t11B.10.000009
ORF1ab/nsp756L56VCttGtt11B.10.000009
ORF1ab/nsp756L56delCTT---11B.10.000009
ORF1ab/nsp756L56FCttTtt11B.1.1.1740.003378
ORF1ab/nsp756L56FCttTtt11B.1.1.1860.003436
ORF1ab/nsp756L56FCttTtt11B.1.1.2160.00089
ORF1ab/nsp756L56FCttTtt11B.1.1.2170.003636
ORF1ab/nsp756L56FCttTtt11B.1.1.2580.003257
ORF1ab/nsp756L56FCttTtt11B.1.1.2650.003155
ORF1ab/nsp756L56FCttTtt11B.1.1.280.000311
ORF1ab/nsp756L56FCttTtt11B.1.1.2840.000107
ORF1ab/nsp756L56FCttTtt11B.1.1.2890.002083
ORF1ab/nsp756L56ICttAtt11B.1.1.2980.000862
ORF1ab/nsp756L56FCttTtt11B.1.1.2980.000862
ORF1ab/nsp756L56FCttTtt11B.1.1.3160.000925
ORF1ab/nsp756L56FCttTtt11B.1.1.3470.018182
ORF1ab/nsp756L56FCttTtt11B.1.1.370.000193
ORF1ab/nsp756L56FCttTtt11B.1.1.3890.006061
ORF1ab/nsp756L56FCttTtt11B.1.1.3960.045455
ORF1ab/nsp756L56VCttGtt11B.1.1.3980.003226
ORF1ab/nsp756L56RcTtcGt11B.1.1.3980.003226
ORF1ab/nsp756L56FCttTtt11B.1.1.3980.003226
ORF1ab/nsp756L56delCTT---11B.1.1.4480.002033
ORF1ab/nsp756L56FCttTtt11B.1.1.5250.005464
ORF1ab/nsp756L56FCttTtt11B.1.1.5280.004808
ORF1ab/nsp756L56PcTtcCt11B.1.1.70.000001
ORF1ab/nsp756L56FCttTtt11B.1.1280.000635
ORF1ab/nsp756L56FCttTtt11B.1.1450.052632
ORF1ab/nsp756L56FCttTtt11B.1.1570.002985
ORF1ab/nsp756L56PcTtcCt11B.1.1600.000031
ORF1ab/nsp756L56VCttGtt11B.1.160.300.002976
ORF1ab/nsp756L56PcTtcCt11B.1.1770.000013
ORF1ab/nsp756L56PcTtcCt11B.1.177.120.000152
ORF1ab/nsp756L56FCttTtt11B.1.177.320.00135
ORF1ab/nsp756L56FCttTtt11B.1.177.450.000381
ORF1ab/nsp756L56FCttTtt11B.1.177.600.000218
ORF1ab/nsp756L56LctTctC11B.1.177.720.00339
ORF1ab/nsp756L56FCttTtt11B.1.177.730.000566
ORF1ab/nsp756L56PcTtcCt11B.1.177.830.001481
ORF1ab/nsp756L56del1cTtc-t11B.1.20.000009
ORF1ab/nsp756L56FCttTtt11B.1.2060.000816
ORF1ab/nsp756L56LctTctC11B.1.214.20.0006
ORF1ab/nsp756L56PcTtcCt11B.1.2360.002053
ORF1ab/nsp756L56ICttAtt11B.1.2400.000216
ORF1ab/nsp756L56LctTctC11B.1.2400.000216
ORF1ab/nsp756L56delCTT---11B.1.2580.000067
ORF1ab/nsp756L56FCttTtt11B.1.258.170.000104
ORF1ab/nsp756L56delCTT---11B.1.258.30.001675
ORF1ab/nsp756L56ICttAtt11B.1.3510.00003
ORF1ab/nsp756L56FCttTtt11B.1.360.000146
ORF1ab/nsp756L56ICttAtt11B.1.36.220.001208
ORF1ab/nsp756L56FCttTtt11B.1.36.290.000517
ORF1ab/nsp756L56FCttTtt11B.1.3690.000285
ORF1ab/nsp756L56FCttTtt11B.1.3820.008929
ORF1ab/nsp756L56LctTctC11B.1.3970.004854
ORF1ab/nsp756L56LctTctG11B.1.3980.002976
ORF1ab/nsp756L56FCttTtt11B.1.4130.004255
ORF1ab/nsp756L56ICttAtt11B.1.4290.000024
ORF1ab/nsp756L56LctTctC11B.1.4380.006536
ORF1ab/nsp756L56ICttAtt11B.1.438.10.000107
ORF1ab/nsp756L56FCttTtt11B.1.438.10.000107
ORF1ab/nsp756L56LctTctG11B.1.4590.004082
ORF1ab/nsp756L56LctTctA11B.1.466.20.000391
ORF1ab/nsp756L56FCttTtt11B.1.4680.005714
ORF1ab/nsp756L56FCttTtt11B.1.4700.001404
ORF1ab/nsp756L56FCttTtt11B.1.4800.002488
ORF1ab/nsp756L56ICttAtt11B.1.5090.000866
ORF1ab/nsp756L56FCttTtt11B.1.5240.001406
ORF1ab/nsp756L56FCttTtt11B.1.5250.000113
ORF1ab/nsp756L56LctTctC11B.1.5250.000113
ORF1ab/nsp756L56FCttTtt11B.1.5600.00463
ORF1ab/nsp756L56FCttTtt11B.1.5610.000397
ORF1ab/nsp756L56FCttTtt11B.1.5650.00081
ORF1ab/nsp756L56FCttTtt11B.1.5820.000491
ORF1ab/nsp756L56FCttTtt11B.1.5960.000087
ORF1ab/nsp756L56LctTctC11B.1.5960.000087
ORF1ab/nsp756L56del1cTtc-t11B.1.617.20.000004
ORF1ab/nsp756L56ICttAtt11B.1.617.20.000004
ORF1ab/nsp756L56PcTtcCt11B.1.617.20.000004
ORF1ab/nsp756L56LctTctA11B.1.6210.000089
ORF1ab/nsp756L56FCttTtt11B.1.6290.013333
ORF1ab/nsp756L56FCttTtt11B.400.000364
ORF1ab/nsp756L56FCttTtt11B.60.00091
ORF1ab/nsp756L56del1ctTct-11C.170.055556
ORF1ab/nsp756L56delCTT---11N.40.004255
ORF1ab/nsp756L56FCttTtt11P.1.10.000318
ORF1ab/nsp756L56FCttTtt11P.1.10.10.00813
ORF1ab/nsp756L56LctTctC11P.1.140.000048
ORF1ab/nsp756L56FCttTtt11P.1.150.000232
ORF1ab/nsp756L56ICttAtt11P.1.150.000232
ORF1ab/nsp756L56FCttTtt11P.1.70.000319
ORF1ab/nsp756L56FCttTtt11Q.10.000126
ORF1ab/nsp756L56FCttTtt11Q.30.000145
ORF1ab/nsp756L56FCttTtt11R.10.00009