CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 50

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp750E50GE3909GnonsyngAagGa25622562111990-11992
ORF1ab/nsp750E50KE3909KnonsynGaaAaa128128111990-11992
ORF1ab/nsp750E50DE3909DnonsyngaAgaT67600.89552211990-11992
ORF1ab/nsp750E50DE3909DnonsyngaAgaC6770.10447811990-11992
ORF1ab/nsp750E50EE3909EsyngaAgaG6464111990-11992
ORF1ab/nsp750E50del1E3909del1delgAag-a4545111990-11992
ORF1ab/nsp750E50delE3909deldelGAA---1515111990-11992
ORF1ab/nsp750E50XE3909XnonsynGaaTaa77111990-11992
ORF1ab/nsp750E50LE3909LnonsynGAaTTa33111990-11992
ORF1ab/nsp750E50AE3909AnonsyngAagCa22111990-11992
ORF1ab/nsp750E50VE3909VnonsyngAagTa22111990-11992
ORF1ab/nsp750E50del2E3909del2delGAa--a210.511990-11992
ORF1ab/nsp750E50del2E3909del2delgAAg--210.511990-11992
ORF1ab/nsp750E50SE3909SnonsynGAaTCa11111990-11992

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp750E50GgAagGa25622562All0.00049
ORF1ab/nsp750E50GgAagGa670670B.1.1.4330.954416
ORF1ab/nsp750E50GgAagGa323323AY.40.000503
ORF1ab/nsp750E50GgAagGa176176AY.250.001059
ORF1ab/nsp750E50KGaaAaa128128All0.000024
ORF1ab/nsp750E50GgAagGa100100AY.30.000995
ORF1ab/nsp750E50GgAagGa100100B.1.1.70.00009
ORF1ab/nsp750E50GgAagGa9595AY.430.000421
ORF1ab/nsp750E50GgAagGa8484B.1.20.00074
ORF1ab/nsp750E50GgAagGa8080B.1.617.20.000301
ORF1ab/nsp750E50GgAagGa7979AY.360.011709
ORF1ab/nsp750E50DgaAgaT6067All0.000011
ORF1ab/nsp750E50DgaAgaC767All0.000001
ORF1ab/nsp750E50EgaAgaG6464All0.000012
ORF1ab/nsp750E50GgAagGa6262B.1.177.570.017421
ORF1ab/nsp750E50GgAagGa5353AY.440.000323
ORF1ab/nsp750E50GgAagGa4949B.1.1770.000645
ORF1ab/nsp750E50del1gAag-a4545All0.000009
ORF1ab/nsp750E50GgAagGa4040AY.1030.000248
ORF1ab/nsp750E50GgAagGa3737AY.3.10.003155
ORF1ab/nsp750E50GgAagGa3333B.10.000302
ORF1ab/nsp750E50GgAagGa3131B.1.177.210.002371
ORF1ab/nsp750E50GgAagGa3030AY.330.002003
ORF1ab/nsp750E50KGaaAaa2828B.1.20.000247
ORF1ab/nsp750E50GgAagGa2727AY.840.011811
ORF1ab/nsp750E50GgAagGa2626AY.4.20.000564
ORF1ab/nsp750E50DgaAgaT2121B.1.10.000381
ORF1ab/nsp750E50GgAagGa2121B.1.1.3170.008646
ORF1ab/nsp750E50GgAagGa2121B.1.1.3690.009371
ORF1ab/nsp750E50GgAagGa1919B.1.10.000345
ORF1ab/nsp750E50DgaAgaT1617B.1.4270.000808
ORF1ab/nsp750E50DgaAgaC117B.1.4270.00005
ORF1ab/nsp750E50GgAagGa1717B.1.4290.0004
ORF1ab/nsp750E50delGAA---1515All0.000003
ORF1ab/nsp750E50GgAagGa1515AY.390.000371
ORF1ab/nsp750E50GgAagGa1515B.1.1.5190.000596
ORF1ab/nsp750E50KGaaAaa1414B.1.1.70.000013
ORF1ab/nsp750E50EgaAgaG1414B.1.1.70.000013
ORF1ab/nsp750E50EgaAgaG1414B.1.617.20.000053
ORF1ab/nsp750E50GgAagGa1313AY.1020.000345
ORF1ab/nsp750E50GgAagGa1313AY.200.000505
ORF1ab/nsp750E50GgAagGa1212AY.50.000248
ORF1ab/nsp750E50GgAagGa1212B.1.2580.000799
ORF1ab/nsp750E50GgAagGa1111AY.270.000712
ORF1ab/nsp750E50GgAagGa1111AY.4.2.10.001639
ORF1ab/nsp750E50DgaAgaT911B.1.1770.000119
ORF1ab/nsp750E50DgaAgaC211B.1.1770.000026
ORF1ab/nsp750E50GgAagGa1010AY.290.000158
ORF1ab/nsp750E50del1gAag-a1010B.1.20.000088
ORF1ab/nsp750E50GgAagGa1010U.20.087719
ORF1ab/nsp750E50KGaaAaa99B.1.5750.002731
ORF1ab/nsp750E50GgAagGa88AY.450.000973
ORF1ab/nsp750E50GgAagGa88B.1.1600.00025
ORF1ab/nsp750E50del1gAag-a88B.1.617.20.00003
ORF1ab/nsp750E50XGaaTaa77All0.000001
ORF1ab/nsp750E50GgAagGa77AY.1180.000439
ORF1ab/nsp750E50KGaaAaa77AY.30.00007
ORF1ab/nsp750E50KGaaAaa77AY.40.000011
ORF1ab/nsp750E50GgAagGa77AY.60.000288
ORF1ab/nsp750E50KGaaAaa77B.1.1.3180.002112
ORF1ab/nsp750E50GgAagGa77B.1.177.790.016393
ORF1ab/nsp750E50GgAagGa77B.1.2210.000497
ORF1ab/nsp750E50GgAagGa66AE.80.002934
ORF1ab/nsp750E50EgaAgaG66AY.1030.000037
ORF1ab/nsp750E50EgaAgaG66AY.30.00006
ORF1ab/nsp750E50GgAagGa66AY.470.000187
ORF1ab/nsp750E50GgAagGa66AY.750.000336
ORF1ab/nsp750E50DgaAgaT66B.1.1.2140.000333
ORF1ab/nsp750E50KGaaAaa55AY.250.00003
ORF1ab/nsp750E50GgAagGa55B0.000639
ORF1ab/nsp750E50GgAagGa55B.1.1.3770.006906
ORF1ab/nsp750E50GgAagGa55B.1.177.860.000917
ORF1ab/nsp750E50GgAagGa44AY.230.000279
ORF1ab/nsp750E50GgAagGa44AY.39.10.000158
ORF1ab/nsp750E50KGaaAaa44AY.39.10.000158
ORF1ab/nsp750E50KGaaAaa44AY.430.000018
ORF1ab/nsp750E50KGaaAaa44B.1.1770.000053
ORF1ab/nsp750E50GgAagGa44B.1.2430.000278
ORF1ab/nsp750E50GgAagGa44B.1.360.000584
ORF1ab/nsp750E50GgAagGa44B.1.438.10.000429
ORF1ab/nsp750E50GgAagGa44B.1.5960.000349
ORF1ab/nsp750E50LGAaTTa33All0.000001
ORF1ab/nsp750E50del1gAag-a33AY.1030.000019
ORF1ab/nsp750E50GgAagGa33AY.1190.000106
ORF1ab/nsp750E50KGaaAaa33AY.440.000018
ORF1ab/nsp750E50GgAagGa33AY.460.000312
ORF1ab/nsp750E50DgaAgaT33AY.470.000093
ORF1ab/nsp750E50GgAagGa33AY.850.001282
ORF1ab/nsp750E50GgAagGa33AY.98.10.000145
ORF1ab/nsp750E50GgAagGa33AY.990.003148
ORF1ab/nsp750E50GgAagGa33B.1.1.390.001529
ORF1ab/nsp750E50delGAA---33B.1.1.70.000003
ORF1ab/nsp750E50GgAagGa33B.1.177.70.000495
ORF1ab/nsp750E50GgAagGa33B.1.2400.000647
ORF1ab/nsp750E50GgAagGa33B.1.3510.000089
ORF1ab/nsp750E50GgAagGa33B.1.36.160.004274
ORF1ab/nsp750E50EgaAgaG33B.1.3610.003866
ORF1ab/nsp750E50GgAagGa33B.1.5610.001191
ORF1ab/nsp750E50GgAagGa33D.20.000225
ORF1ab/nsp750E50GgAagGa33P.20.00056
ORF1ab/nsp750E50XGaaTaa220.111111
ORF1ab/nsp750E50delGAA---220.111111
ORF1ab/nsp750E50VgAagTa220.111111
ORF1ab/nsp750E50AgAagCa22All0
ORF1ab/nsp750E50VgAagTa22All0
ORF1ab/nsp750E50del2GAa--a12All0
ORF1ab/nsp750E50del2gAAg--12All0
ORF1ab/nsp750E50KGaaAaa22AY.1030.000012
ORF1ab/nsp750E50GgAagGa22AY.1130.000285
ORF1ab/nsp750E50GgAagGa22AY.1200.000074
ORF1ab/nsp750E50del1gAag-a22AY.120.10.000642
ORF1ab/nsp750E50GgAagGa22AY.260.000057
ORF1ab/nsp750E50GgAagGa22AY.320.001065
ORF1ab/nsp750E50EgaAgaG22AY.390.000049
ORF1ab/nsp750E50DgaAgaT22AY.40.000003
ORF1ab/nsp750E50delGAA---22AY.430.000009
ORF1ab/nsp750E50EgaAgaG22AY.430.000009
ORF1ab/nsp750E50del1gAag-a22AY.440.000012
ORF1ab/nsp750E50GgAagGa22AY.46.10.002053
ORF1ab/nsp750E50GgAagGa22AY.46.40.000329
ORF1ab/nsp750E50GgAagGa22AY.46.60.000144
ORF1ab/nsp750E50KGaaAaa22AY.50.000041
ORF1ab/nsp750E50KGaaAaa22AY.540.000191
ORF1ab/nsp750E50GgAagGa22AY.740.000231
ORF1ab/nsp750E50GgAagGa22AY.90.000135
ORF1ab/nsp750E50GgAagGa22AY.9.10.000167
ORF1ab/nsp750E50GgAagGa22AY.920.000575
ORF1ab/nsp750E50GgAagGa22AY.980.000158
ORF1ab/nsp750E50GgAagGa22AY.99.20.000184
ORF1ab/nsp750E50EgaAgaG22B.10.000018
ORF1ab/nsp750E50KGaaAaa22B.1.10.000036
ORF1ab/nsp750E50GgAagGa22B.1.1.330.000842
ORF1ab/nsp750E50GgAagGa22B.1.1.4480.004065
ORF1ab/nsp750E50GgAagGa22B.1.1.4640.002946
ORF1ab/nsp750E50GgAagGa22B.1.1.630.000772
ORF1ab/nsp750E50del1gAag-a22B.1.1.70.000002
ORF1ab/nsp750E50GgAagGa22B.1.177.600.000437
ORF1ab/nsp750E50GgAagGa22B.1.177.80.001505
ORF1ab/nsp750E50GgAagGa22B.1.177.820.000955
ORF1ab/nsp750E50EgaAgaG22B.1.20.000018
ORF1ab/nsp750E50GgAagGa22B.1.258.110.000793
ORF1ab/nsp750E50GgAagGa22B.1.2790.001027
ORF1ab/nsp750E50GgAagGa22B.1.3460.002621
ORF1ab/nsp750E50GgAagGa22B.1.36.290.001035
ORF1ab/nsp750E50GgAagGa22B.1.4000.000858
ORF1ab/nsp750E50GgAagGa22B.1.4270.000101
ORF1ab/nsp750E50GgAagGa22B.1.466.20.000782
ORF1ab/nsp750E50GgAagGa22B.1.6090.000959
ORF1ab/nsp750E50KGaaAaa22B.1.617.20.000008
ORF1ab/nsp750E50KGaaAaa22B.30.001661
ORF1ab/nsp750E50GgAagGa22B.30.001661
ORF1ab/nsp750E50del1gAag-a22P.10.000032
ORF1ab/nsp750E50KGaaAaa22P.1.140.000096
ORF1ab/nsp750E50KGaaAaa22U.30.007722
ORF1ab/nsp750E50del1gAag-a11A0.000387
ORF1ab/nsp750E50GgAagGa11A.2.40.003367
ORF1ab/nsp750E50GgAagGa11AD.20.000219
ORF1ab/nsp750E50SGAaTCa11All0
ORF1ab/nsp750E50GgAagGa11AY.1000.000046
ORF1ab/nsp750E50DgaAgaC11AY.1000.000046
ORF1ab/nsp750E50XGaaTaa11AY.1030.000006
ORF1ab/nsp750E50GgAagGa11AY.1080.001103
ORF1ab/nsp750E50GgAagGa11AY.1100.000113
ORF1ab/nsp750E50KGaaAaa11AY.1140.000231
ORF1ab/nsp750E50GgAagGa11AY.1170.000085
ORF1ab/nsp750E50KGaaAaa11AY.1180.000063
ORF1ab/nsp750E50del1gAag-a11AY.1200.000037
ORF1ab/nsp750E50KGaaAaa11AY.1200.000037
ORF1ab/nsp750E50GgAagGa11AY.130.000161
ORF1ab/nsp750E50GgAagGa11AY.140.000088
ORF1ab/nsp750E50del1gAag-a11AY.140.000088
ORF1ab/nsp750E50GgAagGa11AY.16.10.00047
ORF1ab/nsp750E50del1gAag-a11AY.200.000039
ORF1ab/nsp750E50KGaaAaa11AY.200.000039
ORF1ab/nsp750E50DgaAgaC11AY.250.000006
ORF1ab/nsp750E50EgaAgaG11AY.250.000006
ORF1ab/nsp750E50DgaAgaT11AY.270.000065
ORF1ab/nsp750E50EgaAgaG11AY.290.000016
ORF1ab/nsp750E50del1gAag-a11AY.30.00001
ORF1ab/nsp750E50GgAagGa11AY.34.10.00051
ORF1ab/nsp750E50EgaAgaG11AY.360.000148
ORF1ab/nsp750E50KGaaAaa11AY.390.000025
ORF1ab/nsp750E50XGaaTaa11AY.390.000025
ORF1ab/nsp750E50EgaAgaG11AY.40.000002
ORF1ab/nsp750E50GgAagGa11AY.4.50.000107
ORF1ab/nsp750E50del1gAag-a11AY.480.000465
ORF1ab/nsp750E50del1gAag-a11AY.50.000021
ORF1ab/nsp750E50GgAagGa11AY.5.40.000277
ORF1ab/nsp750E50GgAagGa11AY.540.000095
ORF1ab/nsp750E50GgAagGa11AY.560.001605
ORF1ab/nsp750E50KGaaAaa11AY.590.00053
ORF1ab/nsp750E50GgAagGa11AY.610.000105
ORF1ab/nsp750E50KGaaAaa11AY.7.10.000113
ORF1ab/nsp750E50GgAagGa11AY.700.000209
ORF1ab/nsp750E50del1gAag-a11AY.710.000475
ORF1ab/nsp750E50GgAagGa11AY.75.10.00018
ORF1ab/nsp750E50del1gAag-a11AY.790.001211
ORF1ab/nsp750E50del1gAag-a11AY.820.001357
ORF1ab/nsp750E50KGaaAaa11AY.840.000437
ORF1ab/nsp750E50GgAagGa11AY.9.20.000037
ORF1ab/nsp750E50GgAagGa11AY.910.00073
ORF1ab/nsp750E50GgAagGa11AY.960.002075
ORF1ab/nsp750E50EgaAgaG11AY.99.20.000092
ORF1ab/nsp750E50XGaaTaa11B.10.000009
ORF1ab/nsp750E50KGaaAaa11B.10.000009
ORF1ab/nsp750E50del1gAag-a11B.10.000009
ORF1ab/nsp750E50delGAA---11B.10.000009
ORF1ab/nsp750E50LGAaTTa11B.10.000009
ORF1ab/nsp750E50XGaaTaa11B.1.10.000018
ORF1ab/nsp750E50AgAagCa11B.1.10.000018
ORF1ab/nsp750E50EgaAgaG11B.1.10.000018
ORF1ab/nsp750E50del1gAag-a11B.1.10.000018
ORF1ab/nsp750E50SGAaTCa11B.1.10.000018
ORF1ab/nsp750E50DgaAgaT11B.1.1.1230.017857
ORF1ab/nsp750E50GgAagGa11B.1.1.1530.001095
ORF1ab/nsp750E50GgAagGa11B.1.1.1740.003378
ORF1ab/nsp750E50GgAagGa11B.1.1.2000.007463
ORF1ab/nsp750E50GgAagGa11B.1.1.2140.000055
ORF1ab/nsp750E50GgAagGa11B.1.1.2220.000204
ORF1ab/nsp750E50GgAagGa11B.1.1.2410.00207
ORF1ab/nsp750E50GgAagGa11B.1.1.2890.002083
ORF1ab/nsp750E50GgAagGa11B.1.1.3010.001179
ORF1ab/nsp750E50GgAagGa11B.1.1.3060.000438
ORF1ab/nsp750E50EgaAgaG11B.1.1.3340.016393
ORF1ab/nsp750E50del1gAag-a11B.1.1.3430.020833
ORF1ab/nsp750E50GgAagGa11B.1.1.3510.002793
ORF1ab/nsp750E50GgAagGa11B.1.1.3540.004386
ORF1ab/nsp750E50delGAA---11B.1.1.4480.002033
ORF1ab/nsp750E50GgAagGa11B.1.1.5180.006329
ORF1ab/nsp750E50del2GAa--a11B.1.1.5190.00004
ORF1ab/nsp750E50GgAagGa11B.1.1.700.000341
ORF1ab/nsp750E50KGaaAaa11B.1.1280.000635
ORF1ab/nsp750E50GgAagGa11B.1.1390.000733
ORF1ab/nsp750E50GgAagGa11B.1.1570.002985
ORF1ab/nsp750E50KGaaAaa11B.1.1600.000031
ORF1ab/nsp750E50XGaaTaa11B.1.1600.000031
ORF1ab/nsp750E50LGAaTTa11B.1.1600.000031
ORF1ab/nsp750E50GgAagGa11B.1.160.320.004292
ORF1ab/nsp750E50KGaaAaa11B.1.160.90.007194
ORF1ab/nsp750E50EgaAgaG11B.1.1770.000013
ORF1ab/nsp750E50GgAagGa11B.1.177.120.000152
ORF1ab/nsp750E50GgAagGa11B.1.177.180.00116
ORF1ab/nsp750E50GgAagGa11B.1.177.40.000211
ORF1ab/nsp750E50GgAagGa11B.1.177.540.000606
ORF1ab/nsp750E50GgAagGa11B.1.177.580.001332
ORF1ab/nsp750E50GgAagGa11B.1.177.750.001041
ORF1ab/nsp750E50GgAagGa11B.1.177.810.000189
ORF1ab/nsp750E50GgAagGa11B.1.177.830.001481
ORF1ab/nsp750E50GgAagGa11B.1.177.870.000728
ORF1ab/nsp750E50delGAA---11B.1.20.000009
ORF1ab/nsp750E50del1gAag-a11B.1.2060.000816
ORF1ab/nsp750E50GgAagGa11B.1.2270.047619
ORF1ab/nsp750E50EgaAgaG11B.1.2430.00007
ORF1ab/nsp750E50delGAA---11B.1.2580.000067
ORF1ab/nsp750E50KGaaAaa11B.1.258.170.000104
ORF1ab/nsp750E50delGAA---11B.1.258.30.001675
ORF1ab/nsp750E50GgAagGa11B.1.258.40.003448
ORF1ab/nsp750E50GgAagGa11B.1.3490.000715
ORF1ab/nsp750E50AgAagCa11B.1.3510.00003
ORF1ab/nsp750E50GgAagGa11B.1.36.100.004785
ORF1ab/nsp750E50GgAagGa11B.1.36.190.009259
ORF1ab/nsp750E50GgAagGa11B.1.36.220.001208
ORF1ab/nsp750E50KGaaAaa11B.1.36.360.000602
ORF1ab/nsp750E50GgAagGa11B.1.3620.001541
ORF1ab/nsp750E50KGaaAaa11B.1.3690.000285
ORF1ab/nsp750E50delGAA---11B.1.4150.014286
ORF1ab/nsp750E50KGaaAaa11B.1.4160.001269
ORF1ab/nsp750E50del1gAag-a11B.1.4260.001009
ORF1ab/nsp750E50KGaaAaa11B.1.4280.00102
ORF1ab/nsp750E50GgAagGa11B.1.4280.00102
ORF1ab/nsp750E50DgaAgaC11B.1.4290.000024
ORF1ab/nsp750E50GgAagGa11B.1.4390.005917
ORF1ab/nsp750E50GgAagGa11B.1.5080.025641
ORF1ab/nsp750E50GgAagGa11B.1.5170.000427
ORF1ab/nsp750E50GgAagGa11B.1.5460.003704
ORF1ab/nsp750E50GgAagGa11B.1.5510.00129
ORF1ab/nsp750E50GgAagGa11B.1.5570.05
ORF1ab/nsp750E50LGAaTTa11B.1.5610.000397
ORF1ab/nsp750E50GgAagGa11B.1.5640.000426
ORF1ab/nsp750E50EgaAgaG11B.1.5750.000303
ORF1ab/nsp750E50GgAagGa11B.1.5770.000687
ORF1ab/nsp750E50del2gAAg--11B.1.5960.000087
ORF1ab/nsp750E50KGaaAaa11B.1.5960.000087
ORF1ab/nsp750E50EgaAgaG11B.1.5960.000087
ORF1ab/nsp750E50GgAagGa11B.1.5970.00463
ORF1ab/nsp750E50GgAagGa11B.1.617.10.000129
ORF1ab/nsp750E50delGAA---11B.1.617.20.000004
ORF1ab/nsp750E50KGaaAaa11B.1.6210.000089
ORF1ab/nsp750E50GgAagGa11B.1.6210.000089
ORF1ab/nsp750E50DgaAgaT11B.310.003731
ORF1ab/nsp750E50GgAagGa11B.4.80.071429
ORF1ab/nsp750E50GgAagGa11B.6.60.000889
ORF1ab/nsp750E50GgAagGa11B.6.80.008264
ORF1ab/nsp750E50DgaAgaC11D.20.000075
ORF1ab/nsp750E50KGaaAaa11D.20.000075
ORF1ab/nsp750E50delGAA---11N.40.004255
ORF1ab/nsp750E50GgAagGa11N.90.005952
ORF1ab/nsp750E50EgaAgaG11P.10.000016
ORF1ab/nsp750E50del1gAag-a11P.1.10.000318
ORF1ab/nsp750E50EgaAgaG11P.20.000187
ORF1ab/nsp750E50GgAagGa11R.10.00009