CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 44

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp744D44DD3903DsyngaTgaC19131913111972-11974
ORF1ab/nsp744D44AD3903AnonsyngAtgCt969969111972-11974
ORF1ab/nsp744D44GD3903GnonsyngAtgGt172172111972-11974
ORF1ab/nsp744D44ND3903NnonsynGatAat24220.91666711972-11974
ORF1ab/nsp744D44ND3903NnonsynGaTAaC2420.083333311972-11974
ORF1ab/nsp744D44delD3903deldelGAT---1212111972-11974
ORF1ab/nsp744D44HD3903HnonsynGatCat77111972-11974
ORF1ab/nsp744D44YD3903YnonsynGatTat77111972-11974
ORF1ab/nsp744D44TD3903TnonsynGATACC420.511972-11974
ORF1ab/nsp744D44TD3903TnonsynGAtACt420.511972-11974
ORF1ab/nsp744D44ED3903EnonsyngaTgaG22111972-11974
ORF1ab/nsp744D44VD3903VnonsyngAtgTt22111972-11974
ORF1ab/nsp744D44RD3903RnonsynGAtCGt22111972-11974
ORF1ab/nsp744D44del1D3903del1delgAtg-t210.511972-11974
ORF1ab/nsp744D44del1D3903del1delGat-at210.511972-11974
ORF1ab/nsp744D44SD3903SnonsynGAtAGt11111972-11974

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp744D44DgaTgaC19131913All0.000366
ORF1ab/nsp744D44AgAtgCt969969All0.000185
ORF1ab/nsp744D44AgAtgCt959959AY.1030.005954
ORF1ab/nsp744D44DgaTgaC431431B.1.1.70.000386
ORF1ab/nsp744D44DgaTgaC213213B.1.10.003864
ORF1ab/nsp744D44DgaTgaC206206B.1.258.140.201961
ORF1ab/nsp744D44DgaTgaC202202AY.250.001215
ORF1ab/nsp744D44DgaTgaC191191AY.440.001163
ORF1ab/nsp744D44GgAtgGt172172All0.000033
ORF1ab/nsp744D44DgaTgaC148148B.1.160.221
ORF1ab/nsp744D44GgAtgGt8585B.1.5750.025789
ORF1ab/nsp744D44DgaTgaC4646AY.130.007405
ORF1ab/nsp744D44DgaTgaC4141AY.1030.000255
ORF1ab/nsp744D44DgaTgaC3737B.1.617.20.000139
ORF1ab/nsp744D44DgaTgaC3434B.10.000311
ORF1ab/nsp744D44DgaTgaC3434B.1.1.4490.772727
ORF1ab/nsp744D44DgaTgaC2727AY.40.000042
ORF1ab/nsp744D44GgAtgGt2727AY.440.000164
ORF1ab/nsp744D44DgaTgaC2727P.10.000425
ORF1ab/nsp744D44NGatAat2224All0.000004
ORF1ab/nsp744D44NGaTAaC224All0
ORF1ab/nsp744D44DgaTgaC2222AY.260.000623
ORF1ab/nsp744D44DgaTgaC2020B.1.20.000176
ORF1ab/nsp744D44DgaTgaC1919AY.430.000084
ORF1ab/nsp744D44DgaTgaC1818AY.1200.000669
ORF1ab/nsp744D44DgaTgaC1717AY.4.10.012537
ORF1ab/nsp744D44delGAT---1212All0.000002
ORF1ab/nsp744D44DgaTgaC99B.1.1.370.001736
ORF1ab/nsp744D44GgAtgGt99B.1.2130.134328
ORF1ab/nsp744D44DgaTgaC99B.1.3240.014446
ORF1ab/nsp744D44DgaTgaC88AY.50.000165
ORF1ab/nsp744D44DgaTgaC88B.1.1600.00025
ORF1ab/nsp744D44AgAtgCt88B.1.617.20.00003
ORF1ab/nsp744D44HGatCat77All0.000001
ORF1ab/nsp744D44YGatTat77All0.000001
ORF1ab/nsp744D44DgaTgaC77AY.200.000272
ORF1ab/nsp744D44GgAtgGt77B.1.1.70.000006
ORF1ab/nsp744D44GgAtgGt66AY.40.000009
ORF1ab/nsp744D44GgAtgGt66P.10.000095
ORF1ab/nsp744D44DgaTgaC55AY.390.000124
ORF1ab/nsp744D44DgaTgaC55B.1.1770.000066
ORF1ab/nsp744D44DgaTgaC55B.1.258.30.008375
ORF1ab/nsp744D44TGAtACt240.111111
ORF1ab/nsp744D44NGatAat240.111111
ORF1ab/nsp744D44NGaTAaC240.111111
ORF1ab/nsp744D44TGATACC240.111111
ORF1ab/nsp744D44TGATACC24All0
ORF1ab/nsp744D44TGAtACt24All0
ORF1ab/nsp744D44DgaTgaC44AY.1190.000141
ORF1ab/nsp744D44DgaTgaC44AY.30.00004
ORF1ab/nsp744D44DgaTgaC44AY.460.000416
ORF1ab/nsp744D44GgAtgGt44B.10.000037
ORF1ab/nsp744D44GgAtgGt44B.1.20.000035
ORF1ab/nsp744D44DgaTgaC44B.1.4290.000094
ORF1ab/nsp744D44DgaTgaC33AY.1020.00008
ORF1ab/nsp744D44DgaTgaC33AY.1160.00086
ORF1ab/nsp744D44DgaTgaC33AY.750.000168
ORF1ab/nsp744D44DgaTgaC33B.1.1.5140.115385
ORF1ab/nsp744D44NGatAat33B.1.1.70.000003
ORF1ab/nsp744D44NGatAat33B.1.20.000026
ORF1ab/nsp744D44DgaTgaC33B.1.3510.000089
ORF1ab/nsp744D44DgaTgaC33B.1.4160.003807
ORF1ab/nsp744D44DgaTgaC33B.1.4270.000151
ORF1ab/nsp744D44GgAtgGt33B.1.5260.000071
ORF1ab/nsp744D44GgAtgGt33B.1.617.20.000011
ORF1ab/nsp744D44DgaTgaC33B.1.9.40.018405
ORF1ab/nsp744D44DgaTgaC33C.1.20.012766
ORF1ab/nsp744D44RGAtCGt220.111111
ORF1ab/nsp744D44EgaTgaG22All0
ORF1ab/nsp744D44RGAtCGt22All0
ORF1ab/nsp744D44VgAtgTt22All0
ORF1ab/nsp744D44del1Gat-at12All0
ORF1ab/nsp744D44del1gAtg-t12All0
ORF1ab/nsp744D44GgAtgGt22AY.1030.000012
ORF1ab/nsp744D44DgaTgaC22AY.116.10.000623
ORF1ab/nsp744D44GgAtgGt22AY.250.000012
ORF1ab/nsp744D44DgaTgaC22AY.270.000129
ORF1ab/nsp744D44GgAtgGt22AY.390.000049
ORF1ab/nsp744D44DgaTgaC22AY.540.000191
ORF1ab/nsp744D44DgaTgaC22AY.60.000082
ORF1ab/nsp744D44DgaTgaC22AY.610.00021
ORF1ab/nsp744D44GgAtgGt22AY.750.000112
ORF1ab/nsp744D44VgAtgTt22B.1.10.000036
ORF1ab/nsp744D44DgaTgaC22B.1.1.2200.003717
ORF1ab/nsp744D44DgaTgaC22B.1.1.3880.090909
ORF1ab/nsp744D44DgaTgaC22B.1.1.390.001019
ORF1ab/nsp744D44DgaTgaC22B.1.1.4090.005666
ORF1ab/nsp744D44DgaTgaC22B.1.1.530.027397
ORF1ab/nsp744D44HGatCat22B.1.1.70.000002
ORF1ab/nsp744D44GgAtgGt22B.1.1600.000062
ORF1ab/nsp744D44DgaTgaC22B.1.177.190.002861
ORF1ab/nsp744D44DgaTgaC22B.1.177.40.000422
ORF1ab/nsp744D44DgaTgaC22B.1.177.730.001133
ORF1ab/nsp744D44DgaTgaC22B.1.2580.000133
ORF1ab/nsp744D44DgaTgaC22Q.50.033898
ORF1ab/nsp744D44DgaTgaC22Q.80.00033
ORF1ab/nsp744D44DgaTgaC11A.20.000662
ORF1ab/nsp744D44SGAtAGt11All0
ORF1ab/nsp744D44GgAtgGt11AT.10.005128
ORF1ab/nsp744D44NGatAat11AY.100.00053
ORF1ab/nsp744D44DgaTgaC11AY.1060.000335
ORF1ab/nsp744D44DgaTgaC11AY.1130.000142
ORF1ab/nsp744D44GgAtgGt11AY.1190.000035
ORF1ab/nsp744D44AgAtgCt11AY.1190.000035
ORF1ab/nsp744D44NGatAat11AY.130.000161
ORF1ab/nsp744D44DgaTgaC11AY.16.10.00047
ORF1ab/nsp744D44NGatAat11AY.200.000039
ORF1ab/nsp744D44DgaTgaC11AY.23.10.000417
ORF1ab/nsp744D44YGatTat11AY.250.000006
ORF1ab/nsp744D44NGatAat11AY.250.000006
ORF1ab/nsp744D44HGatCat11AY.40.000002
ORF1ab/nsp744D44NGatAat11AY.40.000002
ORF1ab/nsp744D44DgaTgaC11AY.4.20.000022
ORF1ab/nsp744D44DgaTgaC11AY.4.2.10.000149
ORF1ab/nsp744D44delGAT---11AY.4.50.000107
ORF1ab/nsp744D44GgAtgGt11AY.430.000004
ORF1ab/nsp744D44AgAtgCt11AY.430.000004
ORF1ab/nsp744D44delGAT---11AY.430.000004
ORF1ab/nsp744D44HGatCat11AY.430.000004
ORF1ab/nsp744D44del1Gat-at11AY.440.000006
ORF1ab/nsp744D44SGAtAGt11AY.440.000006
ORF1ab/nsp744D44YGatTat11AY.440.000006
ORF1ab/nsp744D44GgAtgGt11AY.5.40.000277
ORF1ab/nsp744D44EgaTgaG11AY.520.000814
ORF1ab/nsp744D44GgAtgGt11AY.60.000041
ORF1ab/nsp744D44DgaTgaC11AY.630.000387
ORF1ab/nsp744D44DgaTgaC11AY.640.000595
ORF1ab/nsp744D44HGatCat11AY.790.001211
ORF1ab/nsp744D44DgaTgaC11AY.840.000437
ORF1ab/nsp744D44DgaTgaC11AY.9.10.000084
ORF1ab/nsp744D44NGatAat11AY.9.10.000084
ORF1ab/nsp744D44DgaTgaC11AY.900.000684
ORF1ab/nsp744D44DgaTgaC11AY.980.000079
ORF1ab/nsp744D44YGatTat11B.10.000009
ORF1ab/nsp744D44delGAT---11B.10.000009
ORF1ab/nsp744D44EgaTgaG11B.10.000009
ORF1ab/nsp744D44DgaTgaC11B.1.1.1340.011364
ORF1ab/nsp744D44YGatTat11B.1.1.250.000569
ORF1ab/nsp744D44DgaTgaC11B.1.1.2770.000759
ORF1ab/nsp744D44DgaTgaC11B.1.1.2820.011628
ORF1ab/nsp744D44DgaTgaC11B.1.1.2840.000107
ORF1ab/nsp744D44DgaTgaC11B.1.1.3390.010526
ORF1ab/nsp744D44DgaTgaC11B.1.1.3480.000796
ORF1ab/nsp744D44DgaTgaC11B.1.1.4190.007407
ORF1ab/nsp744D44DgaTgaC11B.1.1.4320.001266
ORF1ab/nsp744D44DgaTgaC11B.1.1.4380.05
ORF1ab/nsp744D44DgaTgaC11B.1.1.440.00241
ORF1ab/nsp744D44delGAT---11B.1.1.4480.002033
ORF1ab/nsp744D44DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp744D44delGAT---11B.1.1.70.000001
ORF1ab/nsp744D44YGatTat11B.1.1.70.000001
ORF1ab/nsp744D44DgaTgaC11B.1.1110.001175
ORF1ab/nsp744D44NGatAat11B.1.1600.000031
ORF1ab/nsp744D44DgaTgaC11B.1.160.280.002924
ORF1ab/nsp744D44NGatAat11B.1.1770.000013
ORF1ab/nsp744D44DgaTgaC11B.1.177.150.000631
ORF1ab/nsp744D44DgaTgaC11B.1.177.210.000076
ORF1ab/nsp744D44DgaTgaC11B.1.177.70.000165
ORF1ab/nsp744D44NGatAat11B.1.177.70.000165
ORF1ab/nsp744D44DgaTgaC11B.1.177.770.000726
ORF1ab/nsp744D44GgAtgGt11B.1.177.810.000189
ORF1ab/nsp744D44HGatCat11B.1.20.000009
ORF1ab/nsp744D44delGAT---11B.1.20.000009
ORF1ab/nsp744D44DgaTgaC11B.1.214.20.0006
ORF1ab/nsp744D44DgaTgaC11B.1.2320.000537
ORF1ab/nsp744D44DgaTgaC11B.1.2340.000132
ORF1ab/nsp744D44DgaTgaC11B.1.2430.00007
ORF1ab/nsp744D44del1gAtg-t11B.1.2430.00007
ORF1ab/nsp744D44delGAT---11B.1.258.30.001675
ORF1ab/nsp744D44DgaTgaC11B.1.3490.000715
ORF1ab/nsp744D44DgaTgaC11B.1.36.100.004785
ORF1ab/nsp744D44NGatAat11B.1.36.380.001642
ORF1ab/nsp744D44delGAT---11B.1.3720.010989
ORF1ab/nsp744D44delGAT---11B.1.4150.014286
ORF1ab/nsp744D44NGatAat11B.1.4270.00005
ORF1ab/nsp744D44GgAtgGt11B.1.4270.00005
ORF1ab/nsp744D44DgaTgaC11B.1.4990.00105
ORF1ab/nsp744D44HGatCat11B.1.5260.000024
ORF1ab/nsp744D44NGatAat11B.1.5260.000024
ORF1ab/nsp744D44DgaTgaC11B.1.5510.00129
ORF1ab/nsp744D44DgaTgaC11B.1.5750.000303
ORF1ab/nsp744D44DgaTgaC11B.1.5870.001898
ORF1ab/nsp744D44GgAtgGt11B.1.5950.000261
ORF1ab/nsp744D44delGAT---11B.1.5960.000087
ORF1ab/nsp744D44DgaTgaC11B.1.5960.000087
ORF1ab/nsp744D44DgaTgaC11B.1.6090.000479
ORF1ab/nsp744D44delGAT---11B.1.617.20.000004
ORF1ab/nsp744D44YGatTat11B.1.617.20.000004
ORF1ab/nsp744D44NGatAat11B.1.6210.000089
ORF1ab/nsp744D44DgaTgaC11B.1.6280.000352
ORF1ab/nsp744D44DgaTgaC11B.1.780.008547
ORF1ab/nsp744D44YGatTat11B.1.970.025641
ORF1ab/nsp744D44DgaTgaC11B.40.002208
ORF1ab/nsp744D44DgaTgaC11D.20.000075
ORF1ab/nsp744D44delGAT---11N.40.004255
ORF1ab/nsp744D44NGatAat11P.10.000016
ORF1ab/nsp744D44DgaTgaC11P.1.120.000484
ORF1ab/nsp744D44DgaTgaC11P.1.160.000374
ORF1ab/nsp744D44DgaTgaC11P.1.70.000319