CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 42

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp742A42VA3901VnonsyngCtgTt933933111966-11968
ORF1ab/nsp742A42SA3901SnonsynGctTct8888111966-11968
ORF1ab/nsp742A42TA3901TnonsynGctAct79760.96202511966-11968
ORF1ab/nsp742A42TA3901TnonsynGcTAcC7930.037974711966-11968
ORF1ab/nsp742A42AA3901AsyngcTgcC78710.91025611966-11968
ORF1ab/nsp742A42AA3901AsyngcTgcA7850.064102611966-11968
ORF1ab/nsp742A42AA3901AsyngcTgcG7820.02564111966-11968
ORF1ab/nsp742A42delA3901deldelGCT---1212111966-11968
ORF1ab/nsp742A42GA3901GnonsyngCtgGt99111966-11968
ORF1ab/nsp742A42DA3901DnonsyngCtgAt88111966-11968
ORF1ab/nsp742A42NA3901NnonsynGCtAAt11111966-11968
ORF1ab/nsp742A42PA3901PnonsynGctCct11111966-11968
ORF1ab/nsp742A42del2A3901del2delGCT--G11111966-11968

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp742A42VgCtgTt933933All0.000178
ORF1ab/nsp742A42VgCtgTt211211AM.40.753571
ORF1ab/nsp742A42VgCtgTt188188AY.250.001131
ORF1ab/nsp742A42SGctTct8888All0.000017
ORF1ab/nsp742A42VgCtgTt8383B.1.1.70.000074
ORF1ab/nsp742A42TGctAct7679All0.000015
ORF1ab/nsp742A42TGcTAcC379All0.000001
ORF1ab/nsp742A42AgcTgcC7178All0.000014
ORF1ab/nsp742A42AgcTgcA578All0.000001
ORF1ab/nsp742A42AgcTgcG278All0
ORF1ab/nsp742A42VgCtgTt7878B.1.2340.010292
ORF1ab/nsp742A42SGctTct4444B.1.1.70.000039
ORF1ab/nsp742A42VgCtgTt4242B.10.000385
ORF1ab/nsp742A42VgCtgTt3939B.1.1.4031
ORF1ab/nsp742A42VgCtgTt2727B.1.20.000238
ORF1ab/nsp742A42VgCtgTt2424B.1.4270.001212
ORF1ab/nsp742A42VgCtgTt1919AY.430.000084
ORF1ab/nsp742A42VgCtgTt1919B.1.1.500.012899
ORF1ab/nsp742A42AgcTgcC1616B.1.1.70.000014
ORF1ab/nsp742A42VgCtgTt1515B.1.258.140.014706
ORF1ab/nsp742A42VgCtgTt1414AY.410.004115
ORF1ab/nsp742A42VgCtgTt1313B.1.6210.001151
ORF1ab/nsp742A42delGCT---1212All0.000002
ORF1ab/nsp742A42VgCtgTt1212AY.40.000019
ORF1ab/nsp742A42VgCtgTt1212B.1.5960.001046
ORF1ab/nsp742A42VgCtgTt1212B.1.617.20.000045
ORF1ab/nsp742A42VgCtgTt1111B.1.4290.000259
ORF1ab/nsp742A42TGctAct1010B.1.1.70.000009
ORF1ab/nsp742A42GgCtgGt99All0.000002
ORF1ab/nsp742A42AgcTgcC89B.1.617.20.00003
ORF1ab/nsp742A42AgcTgcA19B.1.617.20.000004
ORF1ab/nsp742A42DgCtgAt88All0.000002
ORF1ab/nsp742A42TGctAct88B.10.000073
ORF1ab/nsp742A42VgCtgTt88B.1.177.830.011852
ORF1ab/nsp742A42SGctTct88B.1.617.20.00003
ORF1ab/nsp742A42AgcTgcC77AY.440.000043
ORF1ab/nsp742A42VgCtgTt77AY.440.000043
ORF1ab/nsp742A42VgCtgTt77B.1.214.10.14
ORF1ab/nsp742A42VgCtgTt77B.1.5260.000165
ORF1ab/nsp742A42SGctTct66AY.670.002786
ORF1ab/nsp742A42TGctAct66B.1.5260.000141
ORF1ab/nsp742A42VgCtgTt55AY.1030.000031
ORF1ab/nsp742A42VgCtgTt55AY.4.20.000108
ORF1ab/nsp742A42AgcTgcC55B.1.1.2140.000277
ORF1ab/nsp742A42TGctAct55B.1.1.5190.000199
ORF1ab/nsp742A42TGctAct55B.1.177.40.001055
ORF1ab/nsp742A42AgcTgcC55B.1.3510.000149
ORF1ab/nsp742A42TGctAct55Q.70.005556
ORF1ab/nsp742A42VgCtgTt44AY.1020.000106
ORF1ab/nsp742A42TGctAct44AY.40.000006
ORF1ab/nsp742A42AgcTgcC44AY.50.000083
ORF1ab/nsp742A42VgCtgTt44B.1.1.370.000771
ORF1ab/nsp742A42TGctAct44B.1.466.20.001565
ORF1ab/nsp742A42VgCtgTt44B.1.5770.002749
ORF1ab/nsp742A42AgcTgcC23AY.1030.000012
ORF1ab/nsp742A42AgcTgcA13AY.1030.000006
ORF1ab/nsp742A42VgCtgTt33AY.120.000948
ORF1ab/nsp742A42VgCtgTt33AY.130.000483
ORF1ab/nsp742A42VgCtgTt33AY.260.000085
ORF1ab/nsp742A42AgcTgcC33AY.30.00003
ORF1ab/nsp742A42SGctTct33AY.40.000005
ORF1ab/nsp742A42DgCtgAt33AY.440.000018
ORF1ab/nsp742A42AgcTgcC33B.10.000027
ORF1ab/nsp742A42VgCtgTt33B.1.177.810.000568
ORF1ab/nsp742A42TGctAct33B.1.5230.007353
ORF1ab/nsp742A42VgCtgTt33P.10.000047
ORF1ab/nsp742A42TGctAct33P.10.000047
ORF1ab/nsp742A42VgCtgTt220.111111
ORF1ab/nsp742A42TGcTAcC220.111111
ORF1ab/nsp742A42VgCtgTt22A.300.285714
ORF1ab/nsp742A42GgCtgGt22AY.1170.000169
ORF1ab/nsp742A42SGctTct22AY.230.000139
ORF1ab/nsp742A42TGctAct22AY.30.00002
ORF1ab/nsp742A42VgCtgTt22AY.30.00002
ORF1ab/nsp742A42TGctAct22AY.430.000009
ORF1ab/nsp742A42SGctTct22AY.430.000009
ORF1ab/nsp742A42AgcTgcC22AY.430.000009
ORF1ab/nsp742A42TGctAct22AY.46.60.000144
ORF1ab/nsp742A42TGctAct22AY.60.000082
ORF1ab/nsp742A42SGctTct22AY.750.000112
ORF1ab/nsp742A42SGctTct22B.10.000018
ORF1ab/nsp742A42VgCtgTt22B.1.10.000036
ORF1ab/nsp742A42SGctTct22B.1.1.630.000772
ORF1ab/nsp742A42VgCtgTt22B.1.177.120.000303
ORF1ab/nsp742A42VgCtgTt22B.1.2210.000142
ORF1ab/nsp742A42AgcTgcC22B.1.2220.003384
ORF1ab/nsp742A42VgCtgTt22B.1.3510.000059
ORF1ab/nsp742A42TGctAct22B.1.4290.000047
ORF1ab/nsp742A42VgCtgTt22D.20.00015
ORF1ab/nsp742A42TGctAct22R.10.00018
ORF1ab/nsp742A42AgcTgcA11A0.000387
ORF1ab/nsp742A42del2GCT--G11All0
ORF1ab/nsp742A42NGCtAAt11All0
ORF1ab/nsp742A42PGctCct11All0
ORF1ab/nsp742A42SGctTct11AY.1020.000027
ORF1ab/nsp742A42SGctTct11AY.1030.000006
ORF1ab/nsp742A42VgCtgTt11AY.1140.000231
ORF1ab/nsp742A42VgCtgTt11AY.116.10.000311
ORF1ab/nsp742A42VgCtgTt11AY.1190.000035
ORF1ab/nsp742A42SGctTct11AY.1200.000037
ORF1ab/nsp742A42TGctAct11AY.140.000088
ORF1ab/nsp742A42SGctTct11AY.160.00038
ORF1ab/nsp742A42del2GCT--G11AY.200.000039
ORF1ab/nsp742A42AgcTgcC11AY.200.000039
ORF1ab/nsp742A42AgcTgcG11AY.230.00007
ORF1ab/nsp742A42SGctTct11AY.250.000006
ORF1ab/nsp742A42DgCtgAt11AY.250.000006
ORF1ab/nsp742A42delGCT---11AY.30.00001
ORF1ab/nsp742A42SGctTct11AY.30.00001
ORF1ab/nsp742A42VgCtgTt11AY.390.000025
ORF1ab/nsp742A42SGctTct11AY.390.000025
ORF1ab/nsp742A42TGctAct11AY.390.000025
ORF1ab/nsp742A42GgCtgGt11AY.40.000002
ORF1ab/nsp742A42AgcTgcC11AY.40.000002
ORF1ab/nsp742A42AgcTgcC11AY.4.20.000022
ORF1ab/nsp742A42TGctAct11AY.4.20.000022
ORF1ab/nsp742A42delGCT---11AY.4.50.000107
ORF1ab/nsp742A42delGCT---11AY.430.000004
ORF1ab/nsp742A42NGCtAAt11AY.440.000006
ORF1ab/nsp742A42SGctTct11AY.440.000006
ORF1ab/nsp742A42AgcTgcC11AY.460.000104
ORF1ab/nsp742A42VgCtgTt11AY.460.000104
ORF1ab/nsp742A42TGctAct11AY.46.40.000165
ORF1ab/nsp742A42GgCtgGt11AY.490.003195
ORF1ab/nsp742A42AgcTgcC11AY.490.003195
ORF1ab/nsp742A42VgCtgTt11AY.540.000095
ORF1ab/nsp742A42VgCtgTt11AY.60.000041
ORF1ab/nsp742A42TGcTAcC11AY.690.000187
ORF1ab/nsp742A42SGctTct11AY.700.000209
ORF1ab/nsp742A42AgcTgcC11AY.75.10.00018
ORF1ab/nsp742A42GgCtgGt11AY.840.000437
ORF1ab/nsp742A42AgcTgcC11AY.90.000068
ORF1ab/nsp742A42VgCtgTt11AY.9.20.000037
ORF1ab/nsp742A42TGctAct11AY.99.20.000092
ORF1ab/nsp742A42GgCtgGt11B.10.000009
ORF1ab/nsp742A42delGCT---11B.10.000009
ORF1ab/nsp742A42AgcTgcA11B.1.10.000018
ORF1ab/nsp742A42TGctAct11B.1.10.000018
ORF1ab/nsp742A42GgCtgGt11B.1.10.000018
ORF1ab/nsp742A42VgCtgTt11B.1.1.10.000327
ORF1ab/nsp742A42DgCtgAt11B.1.1.1610.003534
ORF1ab/nsp742A42SGctTct11B.1.1.1640.005155
ORF1ab/nsp742A42SGctTct11B.1.1.1740.003378
ORF1ab/nsp742A42VgCtgTt11B.1.1.2320.001815
ORF1ab/nsp742A42VgCtgTt11B.1.1.2400.004695
ORF1ab/nsp742A42VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp742A42VgCtgTt11B.1.1.330.000421
ORF1ab/nsp742A42SGctTct11B.1.1.3370.003597
ORF1ab/nsp742A42delGCT---11B.1.1.4480.002033
ORF1ab/nsp742A42AgcTgcC11B.1.1.460.004367
ORF1ab/nsp742A42AgcTgcC11B.1.1.50.008333
ORF1ab/nsp742A42GgCtgGt11B.1.1.70.000001
ORF1ab/nsp742A42delGCT---11B.1.1.70.000001
ORF1ab/nsp742A42SGctTct11B.1.1570.002985
ORF1ab/nsp742A42VgCtgTt11B.1.160.300.002976
ORF1ab/nsp742A42VgCtgTt11B.1.1770.000013
ORF1ab/nsp742A42AgcTgcC11B.1.1770.000013
ORF1ab/nsp742A42AgcTgcA11B.1.177.210.000076
ORF1ab/nsp742A42TGctAct11B.1.177.210.000076
ORF1ab/nsp742A42SGctTct11B.1.177.350.000691
ORF1ab/nsp742A42VgCtgTt11B.1.177.420.000894
ORF1ab/nsp742A42VgCtgTt11B.1.177.540.000606
ORF1ab/nsp742A42SGctTct11B.1.177.820.000477
ORF1ab/nsp742A42SGctTct11B.1.20.000009
ORF1ab/nsp742A42DgCtgAt11B.1.20.000009
ORF1ab/nsp742A42delGCT---11B.1.20.000009
ORF1ab/nsp742A42VgCtgTt11B.1.2230.002778
ORF1ab/nsp742A42VgCtgTt11B.1.230.006061
ORF1ab/nsp742A42VgCtgTt11B.1.2580.000067
ORF1ab/nsp742A42VgCtgTt11B.1.258.170.000104
ORF1ab/nsp742A42delGCT---11B.1.258.30.001675
ORF1ab/nsp742A42TGctAct11B.1.3240.001605
ORF1ab/nsp742A42AgcTgcG11B.1.3320.003497
ORF1ab/nsp742A42DgCtgAt11B.1.3510.00003
ORF1ab/nsp742A42VgCtgTt11B.1.36.170.000494
ORF1ab/nsp742A42VgCtgTt11B.1.36.390.002217
ORF1ab/nsp742A42DgCtgAt11B.1.3620.001541
ORF1ab/nsp742A42VgCtgTt11B.1.3660.004878
ORF1ab/nsp742A42VgCtgTt11B.1.3670.000792
ORF1ab/nsp742A42VgCtgTt11B.1.3690.000285
ORF1ab/nsp742A42delGCT---11B.1.3720.010989
ORF1ab/nsp742A42delGCT---11B.1.4150.014286
ORF1ab/nsp742A42AgcTgcC11B.1.4270.00005
ORF1ab/nsp742A42AgcTgcC11B.1.4290.000024
ORF1ab/nsp742A42VgCtgTt11B.1.438.10.000107
ORF1ab/nsp742A42TGctAct11B.1.5210.004975
ORF1ab/nsp742A42AgcTgcC11B.1.5950.000261
ORF1ab/nsp742A42SGctTct11B.1.5960.000087
ORF1ab/nsp742A42AgcTgcC11B.1.617.10.000129
ORF1ab/nsp742A42GgCtgGt11B.1.617.20.000004
ORF1ab/nsp742A42PGctCct11B.1.617.20.000004
ORF1ab/nsp742A42TGctAct11B.1.617.20.000004
ORF1ab/nsp742A42delGCT---11B.1.617.20.000004
ORF1ab/nsp742A42VgCtgTt11B.1.6230.000536
ORF1ab/nsp742A42VgCtgTt11B.1.6370.000073
ORF1ab/nsp742A42VgCtgTt11B.230.002924
ORF1ab/nsp742A42VgCtgTt11B.6.60.000889
ORF1ab/nsp742A42VgCtgTt11C.36.30.000567
ORF1ab/nsp742A42TGctAct11D.20.000075
ORF1ab/nsp742A42delGCT---11N.40.004255