CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp7 | 42 | A42V | A3901V | nonsyn | gCt | gTt | 933 | 933 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42S | A3901S | nonsyn | Gct | Tct | 88 | 88 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42T | A3901T | nonsyn | Gct | Act | 79 | 76 | 0.962025 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42T | A3901T | nonsyn | GcT | AcC | 79 | 3 | 0.0379747 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42A | A3901A | syn | gcT | gcC | 78 | 71 | 0.910256 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42A | A3901A | syn | gcT | gcA | 78 | 5 | 0.0641026 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42A | A3901A | syn | gcT | gcG | 78 | 2 | 0.025641 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42del | A3901del | del | GCT | --- | 12 | 12 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42G | A3901G | nonsyn | gCt | gGt | 9 | 9 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42D | A3901D | nonsyn | gCt | gAt | 8 | 8 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42N | A3901N | nonsyn | GCt | AAt | 1 | 1 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42P | A3901P | nonsyn | Gct | Cct | 1 | 1 | 1 | 11966-11968 |
ORF1ab/nsp7 | 42 | A42del2 | A3901del2 | del | GCT | --G | 1 | 1 | 1 | 11966-11968 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 933 | 933 | All | 0.000178 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 211 | 211 | AM.4 | 0.753571 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 188 | 188 | AY.25 | 0.001131 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 88 | 88 | All | 0.000017 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 83 | 83 | B.1.1.7 | 0.000074 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 76 | 79 | All | 0.000015 |
ORF1ab/nsp7 | 42 | A42T | GcT | AcC | 3 | 79 | All | 0.000001 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 71 | 78 | All | 0.000014 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcA | 5 | 78 | All | 0.000001 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcG | 2 | 78 | All | 0 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 78 | 78 | B.1.234 | 0.010292 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 39 | 39 | B.1.1.403 | 1 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 27 | 27 | B.1.2 | 0.000238 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 24 | 24 | B.1.427 | 0.001212 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 19 | 19 | B.1.1.50 | 0.012899 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 15 | 15 | B.1.258.14 | 0.014706 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 14 | 14 | AY.41 | 0.004115 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 12 | 12 | All | 0.000002 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 9 | 9 | All | 0.000002 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 8 | 9 | B.1.617.2 | 0.00003 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcA | 1 | 9 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 8 | 8 | B.1.177.83 | 0.011852 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 7 | 7 | B.1.214.1 | 0.14 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 6 | 6 | AY.67 | 0.002786 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 5 | 5 | Q.7 | 0.005556 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 2 | 3 | AY.103 | 0.000012 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcA | 1 | 3 | AY.103 | 0.000006 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 42 | A42T | GcT | AcC | 2 | 2 | 0.111111 | |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | A.30 | 0.285714 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp7 | 42 | A42del2 | GCT | --G | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 42 | A42N | GCt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 42 | A42P | Gct | Cct | 1 | 1 | All | 0 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp7 | 42 | A42del2 | GCT | --G | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp7 | 42 | A42N | GCt | AAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp7 | 42 | A42T | GcT | AcC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcG | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp7 | 42 | A42D | gCt | gAt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp7 | 42 | A42S | Gct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp7 | 42 | A42A | gcT | gcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp7 | 42 | A42G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 42 | A42P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp7 | 42 | A42V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp7 | 42 | A42T | Gct | Act | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp7 | 42 | A42del | GCT | --- | 1 | 1 | N.4 | 0.004255 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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