CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp7 | 38 | D38D | D3897D | syn | gaC | gaT | 11224 | 11224 | 1 | 11954-11956 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11224 | 11224 | All | 0.002147 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2608 | 2608 | B.1.1.7 | 0.002335 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2158 | 2158 | B.1.2 | 0.019002 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 707 | 707 | B.1.1.377 | 0.976519 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 442 | 442 | B.1.1.464 | 0.650957 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 387 | 387 | AY.4 | 0.000602 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 384 | 384 | C.18 | 0.994819 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 321 | 321 | B.1.617.2 | 0.001209 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 311 | 311 | AY.105 | 0.2 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 276 | 276 | B.1.177 | 0.003634 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 231 | 231 | B.1.429 | 0.005435 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 222 | 222 | AY.43 | 0.000984 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 215 | 215 | AY.3 | 0.002138 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 199 | 199 | AY.25 | 0.001197 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 176 | 176 | B.1 | 0.001612 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 161 | 161 | AY.44 | 0.00098 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 133 | 133 | AY.47 | 0.004137 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 121 | 121 | P.1 | 0.001906 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 96 | 96 | AY.14 | 0.008449 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 91 | 91 | B.1.1 | 0.001651 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 83 | 83 | B.1.1.329 | 0.319231 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 74 | 74 | B.1.160 | 0.002308 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 67 | 67 | AE.8 | 0.032763 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 66 | 66 | B.1.311 | 0.018122 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 59 | 59 | AY.39 | 0.001458 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 57 | 57 | AY.103 | 0.000354 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 55 | 55 | B.1.1.519 | 0.002184 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 53 | 53 | B.1.505 | 0.232456 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 50 | 50 | B.1.1.432 | 0.063291 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 43 | 43 | B.1.427 | 0.002171 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 37 | 37 | AY.102 | 0.000981 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 35 | 35 | AY.26 | 0.000991 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 34 | 34 | B.1.369 | 0.009698 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 33 | 33 | AY.46 | 0.003435 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 33 | 33 | AY.75 | 0.001849 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 33 | 33 | B.1.177.35 | 0.022806 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 32 | 32 | B.1.1.434 | 0.011154 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 32 | 32 | B.1.177.42 | 0.028623 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 30 | 30 | AA.1 | 0.217391 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 28 | 28 | B.1.177.32 | 0.037787 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 27 | 27 | B.1.177.60 | 0.005898 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 25 | 25 | AY.120 | 0.000929 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 25 | 25 | AY.4.2 | 0.000542 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 24 | 24 | R.1 | 0.00216 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 23 | 23 | AY.107 | 0.010718 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 21 | 21 | B.1.576 | 0.019039 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 20 | 20 | B.1.177.53 | 0.047847 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 19 | 19 | AY.58 | 0.017241 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 19 | 19 | C.36.3 | 0.010777 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 18 | 18 | AY.69 | 0.00336 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 17 | 17 | B.1.561 | 0.006749 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 16 | 16 | A.29 | 0.085106 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 16 | 16 | AY.64 | 0.009524 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 13 | 13 | A.2.5 | 0.006487 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 12 | 12 | B.1.1.294 | 0.01519 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11 | 11 | AY.53 | 0.003163 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11 | 11 | B.1.1.28 | 0.003424 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11 | 11 | B.1.177.21 | 0.000841 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 10 | 10 | AY.75.1 | 0.001803 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 10 | 10 | B.1.389 | 0.01002 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 10 | 10 | B.1.570 | 0.029412 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | B | 0.00115 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 8 | 8 | B.1.1.56 | 0.142857 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | B.1.1.291 | 0.005197 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 5 | 5 | B.1.565 | 0.004052 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | AY.56 | 0.006421 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | B.1.1.157 | 0.003653 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | B.1.177.33 | 0.006579 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | B.1.516 | 0.007828 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | B.1.629 | 0.053333 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.1.280 | 0.009259 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.36.25 | 0.006623 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.1.285 | 0.013072 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.1.404 | 0.031746 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.30 | 0.005025 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.506 | 0.047619 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | C.9 | 0.060606 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.479 | 0.038462 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp7 | 38 | D38D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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