CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 26

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp726S26FS3885FnonsyntCttTt47894789111918-11920
ORF1ab/nsp726S26SS3885SsyntcTtcC84750.89285711918-11920
ORF1ab/nsp726S26SS3885SsyntcTtcA8480.095238111918-11920
ORF1ab/nsp726S26SS3885SsyntcTtcG8410.011904811918-11920
ORF1ab/nsp726S26YS3885YnonsyntCttAt3333111918-11920
ORF1ab/nsp726S26AS3885AnonsynTctGct3030111918-11920
ORF1ab/nsp726S26delS3885deldelTCT---1212111918-11920
ORF1ab/nsp726S26PS3885PnonsynTctCct88111918-11920
ORF1ab/nsp726S26del1S3885del1deltCtt-t77111918-11920
ORF1ab/nsp726S26TS3885TnonsynTctAct33111918-11920
ORF1ab/nsp726S26CS3885CnonsyntCttGt22111918-11920
ORF1ab/nsp726S26LS3885LnonsynTCtCTt11111918-11920

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp726S26FtCttTt47894789All0.000916
ORF1ab/nsp726S26FtCttTt15801580AY.440.009617
ORF1ab/nsp726S26FtCttTt963963B.1.617.20.003626
ORF1ab/nsp726S26FtCttTt818818B.1.20.007203
ORF1ab/nsp726S26FtCttTt184184AY.40.000286
ORF1ab/nsp726S26FtCttTt133133B.1.10.002413
ORF1ab/nsp726S26FtCttTt126126AY.430.000558
ORF1ab/nsp726S26StcTtcC7584All0.000014
ORF1ab/nsp726S26StcTtcA884All0.000002
ORF1ab/nsp726S26StcTtcG184All0
ORF1ab/nsp726S26FtCttTt8181B.1.2641
ORF1ab/nsp726S26FtCttTt5454B.1.1770.000711
ORF1ab/nsp726S26FtCttTt5151AY.250.000307
ORF1ab/nsp726S26FtCttTt4545AY.420.00181
ORF1ab/nsp726S26FtCttTt4242B.1.6210.003718
ORF1ab/nsp726S26FtCttTt3838B.1.5750.011529
ORF1ab/nsp726S26FtCttTt3737AY.30.000368
ORF1ab/nsp726S26YtCttAt3333All0.000006
ORF1ab/nsp726S26ATctGct3030All0.000006
ORF1ab/nsp726S26FtCttTt2525B.1.4290.000588
ORF1ab/nsp726S26FtCttTt2424B.1.3560.041451
ORF1ab/nsp726S26FtCttTt2121AY.1030.00013
ORF1ab/nsp726S26YtCttAt2121AY.440.000128
ORF1ab/nsp726S26FtCttTt2121B.10.000192
ORF1ab/nsp726S26FtCttTt2121B.1.264.11
ORF1ab/nsp726S26FtCttTt2121B.1.6090.010067
ORF1ab/nsp726S26FtCttTt1818B.1.1.70.000016
ORF1ab/nsp726S26FtCttTt1717AY.980.001343
ORF1ab/nsp726S26FtCttTt1515B.1.1.2140.000832
ORF1ab/nsp726S26FtCttTt1515B.1.1600.000468
ORF1ab/nsp726S26StcTtcC1415B.1.20.000123
ORF1ab/nsp726S26StcTtcA115B.1.20.000009
ORF1ab/nsp726S26FtCttTt1515B.1.2340.001979
ORF1ab/nsp726S26FtCttTt1414B.1.617.10.001806
ORF1ab/nsp726S26StcTtcC1313AY.40.00002
ORF1ab/nsp726S26FtCttTt1313B.1.36.160.018519
ORF1ab/nsp726S26delTCT---1212All0.000002
ORF1ab/nsp726S26FtCttTt1212AY.200.000466
ORF1ab/nsp726S26FtCttTt1212AY.99.20.001106
ORF1ab/nsp726S26FtCttTt1111B.1.5950.002871
ORF1ab/nsp726S26FtCttTt1010B.1.177.440.005189
ORF1ab/nsp726S26StcTtcC99AY.250.000054
ORF1ab/nsp726S26FtCttTt99AY.290.000142
ORF1ab/nsp726S26FtCttTt99B.1.5960.000784
ORF1ab/nsp726S26PTctCct88All0.000002
ORF1ab/nsp726S26FtCttTt88AY.1170.000676
ORF1ab/nsp726S26FtCttTt88AY.50.000165
ORF1ab/nsp726S26FtCttTt88AY.750.000448
ORF1ab/nsp726S26StcTtcC58B.10.000046
ORF1ab/nsp726S26StcTtcA38B.10.000027
ORF1ab/nsp726S26FtCttTt88B.1.1.370.001543
ORF1ab/nsp726S26FtCttTt88B.1.1.5190.000318
ORF1ab/nsp726S26FtCttTt88B.1.4160.010152
ORF1ab/nsp726S26del1tCtt-t77All0.000001
ORF1ab/nsp726S26FtCttTt77AY.1020.000186
ORF1ab/nsp726S26FtCttTt77AY.1210.000947
ORF1ab/nsp726S26FtCttTt77AY.390.000173
ORF1ab/nsp726S26FtCttTt77AY.39.10.000277
ORF1ab/nsp726S26YtCttAt77AY.40.000011
ORF1ab/nsp726S26del1tCtt-t77AY.440.000043
ORF1ab/nsp726S26FtCttTt77AY.470.000218
ORF1ab/nsp726S26ATctGct77AY.7.10.000789
ORF1ab/nsp726S26FtCttTt77C.350.005418
ORF1ab/nsp726S26FtCttTt66AY.1190.000212
ORF1ab/nsp726S26FtCttTt66AY.460.000624
ORF1ab/nsp726S26FtCttTt66B.1.1160.069767
ORF1ab/nsp726S26FtCttTt66B.1.4270.000303
ORF1ab/nsp726S26FtCttTt66B.1.5260.000141
ORF1ab/nsp726S26FtCttTt66B.1.5880.00546
ORF1ab/nsp726S26FtCttTt66B.1.6320.040268
ORF1ab/nsp726S26FtCttTt66P.10.000095
ORF1ab/nsp726S26FtCttTt55B.1.1.2410.010352
ORF1ab/nsp726S26FtCttTt55B.1.2210.000355
ORF1ab/nsp726S26FtCttTt55B.1.2430.000348
ORF1ab/nsp726S26FtCttTt55B.1.2580.000333
ORF1ab/nsp726S26FtCttTt55B.1.2700.02809
ORF1ab/nsp726S26FtCttTt55B.1.3690.001426
ORF1ab/nsp726S26StcTtcC55P.10.000079
ORF1ab/nsp726S26ATctGct44AY.40.000006
ORF1ab/nsp726S26StcTtcA24AY.430.000009
ORF1ab/nsp726S26StcTtcC24AY.430.000009
ORF1ab/nsp726S26FtCttTt44AY.5.30.00135
ORF1ab/nsp726S26FtCttTt44B.1.1.2880.007663
ORF1ab/nsp726S26StcTtcC44B.1.1.70.000004
ORF1ab/nsp726S26delTCT---44B.1.1.70.000004
ORF1ab/nsp726S26FtCttTt44B.1.258.220.010667
ORF1ab/nsp726S26FtCttTt44B.1.360.000584
ORF1ab/nsp726S26FtCttTt44D.20.0003
ORF1ab/nsp726S26TTctAct33All0.000001
ORF1ab/nsp726S26FtCttTt33AY.4.20.000065
ORF1ab/nsp726S26FtCttTt33AY.400.002893
ORF1ab/nsp726S26ATctGct33AY.440.000018
ORF1ab/nsp726S26FtCttTt33AY.450.000365
ORF1ab/nsp726S26FtCttTt33AY.60.000123
ORF1ab/nsp726S26FtCttTt33AY.90.000203
ORF1ab/nsp726S26FtCttTt33B.1.1.1410.006036
ORF1ab/nsp726S26FtCttTt33B.1.1.2070.003546
ORF1ab/nsp726S26FtCttTt33B.1.1.2220.000612
ORF1ab/nsp726S26FtCttTt33B.1.1.390.001529
ORF1ab/nsp726S26FtCttTt33B.1.177.160.001993
ORF1ab/nsp726S26FtCttTt33B.1.177.860.00055
ORF1ab/nsp726S26FtCttTt33B.1.2370.014925
ORF1ab/nsp726S26ATctGct33B.1.4290.000071
ORF1ab/nsp726S26StcTtcC33B.1.617.20.000011
ORF1ab/nsp726S26FtCttTt33R.10.00027
ORF1ab/nsp726S26ATctGct220.111111
ORF1ab/nsp726S26FtCttTt22AD.20.000438
ORF1ab/nsp726S26CtCttGt22All0
ORF1ab/nsp726S26StcTtcC22AY.1030.000012
ORF1ab/nsp726S26FtCttTt22AY.1160.000574
ORF1ab/nsp726S26StcTtcC22AY.200.000078
ORF1ab/nsp726S26FtCttTt22AY.330.000134
ORF1ab/nsp726S26FtCttTt22AY.4.50.000215
ORF1ab/nsp726S26FtCttTt22AY.410.000588
ORF1ab/nsp726S26ATctGct22AY.430.000009
ORF1ab/nsp726S26FtCttTt22AY.7.10.000225
ORF1ab/nsp726S26FtCttTt22B0.000256
ORF1ab/nsp726S26ATctGct22B.10.000018
ORF1ab/nsp726S26PTctCct22B.10.000018
ORF1ab/nsp726S26FtCttTt22B.1.1.2200.003717
ORF1ab/nsp726S26FtCttTt22B.1.1.2940.002532
ORF1ab/nsp726S26FtCttTt22B.1.1.4160.00181
ORF1ab/nsp726S26FtCttTt22B.1.1.5170.013605
ORF1ab/nsp726S26StcTtcC22B.1.1770.000026
ORF1ab/nsp726S26FtCttTt22B.1.177.810.000379
ORF1ab/nsp726S26FtCttTt22B.1.214.10.04
ORF1ab/nsp726S26FtCttTt22B.1.2650.002541
ORF1ab/nsp726S26FtCttTt22B.1.3110.000549
ORF1ab/nsp726S26FtCttTt22B.1.36.80.002
ORF1ab/nsp726S26FtCttTt22B.1.438.10.000215
ORF1ab/nsp726S26FtCttTt22B.1.4410.019231
ORF1ab/nsp726S26FtCttTt22B.1.5870.003795
ORF1ab/nsp726S26FtCttTt11A.10.000282
ORF1ab/nsp726S26FtCttTt11A.210.00277
ORF1ab/nsp726S26StcTtcC11A.230.010526
ORF1ab/nsp726S26FtCttTt11AE.80.000489
ORF1ab/nsp726S26LTCtCTt11All0
ORF1ab/nsp726S26FtCttTt11AY.1000.000046
ORF1ab/nsp726S26FtCttTt11AY.1010.00049
ORF1ab/nsp726S26YtCttAt11AY.1030.000006
ORF1ab/nsp726S26ATctGct11AY.1030.000006
ORF1ab/nsp726S26PTctCct11AY.1030.000006
ORF1ab/nsp726S26FtCttTt11AY.1110.000183
ORF1ab/nsp726S26FtCttTt11AY.1130.000142
ORF1ab/nsp726S26FtCttTt11AY.1200.000037
ORF1ab/nsp726S26FtCttTt11AY.120.10.000321
ORF1ab/nsp726S26PTctCct11AY.120.10.000321
ORF1ab/nsp726S26FtCttTt11AY.120.2.10.000498
ORF1ab/nsp726S26YtCttAt11AY.200.000039
ORF1ab/nsp726S26ATctGct11AY.200.000039
ORF1ab/nsp726S26FtCttTt11AY.23.10.000417
ORF1ab/nsp726S26TTctAct11AY.250.000006
ORF1ab/nsp726S26StcTtcC11AY.260.000028
ORF1ab/nsp726S26FtCttTt11AY.260.000028
ORF1ab/nsp726S26StcTtcC11AY.30.00001
ORF1ab/nsp726S26ATctGct11AY.30.00001
ORF1ab/nsp726S26FtCttTt11AY.3.10.000085
ORF1ab/nsp726S26ATctGct11AY.390.000025
ORF1ab/nsp726S26delTCT---11AY.40.000002
ORF1ab/nsp726S26PTctCct11AY.40.000002
ORF1ab/nsp726S26FtCttTt11AY.4.40.000409
ORF1ab/nsp726S26delTCT---11AY.4.50.000107
ORF1ab/nsp726S26StcTtcC11AY.440.000006
ORF1ab/nsp726S26StcTtcC11AY.450.000122
ORF1ab/nsp726S26StcTtcC11AY.46.40.000165
ORF1ab/nsp726S26FtCttTt11AY.46.50.000198
ORF1ab/nsp726S26FtCttTt11AY.46.60.000072
ORF1ab/nsp726S26FtCttTt11AY.530.000288
ORF1ab/nsp726S26StcTtcG11AY.60.000041
ORF1ab/nsp726S26FtCttTt11AY.610.000105
ORF1ab/nsp726S26FtCttTt11AY.640.000595
ORF1ab/nsp726S26FtCttTt11AY.820.001357
ORF1ab/nsp726S26StcTtcC11AY.850.000427
ORF1ab/nsp726S26FtCttTt11AY.870.000833
ORF1ab/nsp726S26FtCttTt11AY.9.20.000037
ORF1ab/nsp726S26FtCttTt11AY.900.000684
ORF1ab/nsp726S26FtCttTt11AY.920.000287
ORF1ab/nsp726S26FtCttTt11AY.960.002075
ORF1ab/nsp726S26delTCT---11B.10.000009
ORF1ab/nsp726S26delTCT---11B.1.10.000018
ORF1ab/nsp726S26delTCT---11B.1.1.1370.0125
ORF1ab/nsp726S26StcTtcC11B.1.1.1890.001513
ORF1ab/nsp726S26PTctCct11B.1.1.2220.000204
ORF1ab/nsp726S26FtCttTt11B.1.1.2790.001121
ORF1ab/nsp726S26FtCttTt11B.1.1.280.000311
ORF1ab/nsp726S26LTCtCTt11B.1.1.2970.002237
ORF1ab/nsp726S26StcTtcC11B.1.1.3160.000925
ORF1ab/nsp726S26StcTtcC11B.1.1.3170.000412
ORF1ab/nsp726S26TTctAct11B.1.1.3180.000302
ORF1ab/nsp726S26FtCttTt11B.1.1.330.000421
ORF1ab/nsp726S26FtCttTt11B.1.1.3370.003597
ORF1ab/nsp726S26FtCttTt11B.1.1.3390.010526
ORF1ab/nsp726S26FtCttTt11B.1.1.4340.000349
ORF1ab/nsp726S26FtCttTt11B.1.1.630.000386
ORF1ab/nsp726S26TTctAct11B.1.1.70.000001
ORF1ab/nsp726S26CtCttGt11B.1.1.70.000001
ORF1ab/nsp726S26PTctCct11B.1.1.70.000001
ORF1ab/nsp726S26FtCttTt11B.1.1.710.006061
ORF1ab/nsp726S26FtCttTt11B.1.1110.001175
ORF1ab/nsp726S26StcTtcC11B.1.1400.018868
ORF1ab/nsp726S26FtCttTt11B.1.1580.02381
ORF1ab/nsp726S26FtCttTt11B.1.177.120.000152
ORF1ab/nsp726S26FtCttTt11B.1.177.170.000821
ORF1ab/nsp726S26FtCttTt11B.1.177.210.000076
ORF1ab/nsp726S26FtCttTt11B.1.177.240.001295
ORF1ab/nsp726S26FtCttTt11B.1.177.550.002331
ORF1ab/nsp726S26FtCttTt11B.1.177.600.000218
ORF1ab/nsp726S26FtCttTt11B.1.177.620.001192
ORF1ab/nsp726S26FtCttTt11B.1.177.690.001484
ORF1ab/nsp726S26FtCttTt11B.1.177.70.000165
ORF1ab/nsp726S26FtCttTt11B.1.177.820.000477
ORF1ab/nsp726S26FtCttTt11B.1.177.870.000728
ORF1ab/nsp726S26YtCttAt11B.1.20.000009
ORF1ab/nsp726S26FtCttTt11B.1.2060.000816
ORF1ab/nsp726S26FtCttTt11B.1.2100.002132
ORF1ab/nsp726S26FtCttTt11B.1.2130.014925
ORF1ab/nsp726S26StcTtcC11B.1.2340.000132
ORF1ab/nsp726S26FtCttTt11B.1.2400.000216
ORF1ab/nsp726S26PTctCct11B.1.2580.000067
ORF1ab/nsp726S26FtCttTt11B.1.3250.006897
ORF1ab/nsp726S26FtCttTt11B.1.3490.000715
ORF1ab/nsp726S26FtCttTt11B.1.36.100.004785
ORF1ab/nsp726S26FtCttTt11B.1.36.170.000494
ORF1ab/nsp726S26FtCttTt11B.1.36.260.002857
ORF1ab/nsp726S26FtCttTt11B.1.36.280.005747
ORF1ab/nsp726S26FtCttTt11B.1.36.290.000517
ORF1ab/nsp726S26FtCttTt11B.1.36.360.000602
ORF1ab/nsp726S26FtCttTt11B.1.362.20.004717
ORF1ab/nsp726S26StcTtcA11B.1.3960.000706
ORF1ab/nsp726S26delTCT---11B.1.4150.014286
ORF1ab/nsp726S26FtCttTt11B.1.4280.00102
ORF1ab/nsp726S26FtCttTt11B.1.4360.001029
ORF1ab/nsp726S26FtCttTt11B.1.4560.003268
ORF1ab/nsp726S26FtCttTt11B.1.466.20.000391
ORF1ab/nsp726S26FtCttTt11B.1.4700.001404
ORF1ab/nsp726S26FtCttTt11B.1.4710.002732
ORF1ab/nsp726S26ATctGct11B.1.5260.000024
ORF1ab/nsp726S26FtCttTt11B.1.5640.000426
ORF1ab/nsp726S26FtCttTt11B.1.5770.000687
ORF1ab/nsp726S26FtCttTt11B.1.5900.004545
ORF1ab/nsp726S26CtCttGt11B.1.5960.000087
ORF1ab/nsp726S26StcTtcC11B.1.617.10.000129
ORF1ab/nsp726S26ATctGct11B.1.617.20.000004
ORF1ab/nsp726S26YtCttAt11B.1.617.20.000004
ORF1ab/nsp726S26YtCttAt11B.1.6210.000089
ORF1ab/nsp726S26StcTtcC11B.1.6210.000089
ORF1ab/nsp726S26ATctGct11B.1.6210.000089
ORF1ab/nsp726S26delTCT---11N.40.004255
ORF1ab/nsp726S26StcTtcA11P.30.001595
ORF1ab/nsp726S26FtCttTt11Q.10.000126
ORF1ab/nsp726S26delTCT---11Q.20.000613