CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 25 & Codon = tTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp725S25LS3884LnonsyntCatTa11772117680.9996611915-11917

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp725S25LtCatTa1176811772All0.002251
ORF1ab/nsp725S25LtCatTa31253125B.1.4970.983632
ORF1ab/nsp725S25LtCatTa21662166B.10.01984
ORF1ab/nsp725S25LtCatTa11321132B.1.5090.980087
ORF1ab/nsp725S25LtCatTa949949B.1.4990.996849
ORF1ab/nsp725S25LtCatTa521521B.1.1.5190.020689
ORF1ab/nsp725S25LtCatTa395395B.1.5030.982587
ORF1ab/nsp725S25LtCatTa382382B.1.31
ORF1ab/nsp725S25LtCatTa225225B.1.5050.986842
ORF1ab/nsp725S25LtCatTa210210AY.40.000327
ORF1ab/nsp725S25LtCatTa140140B.1.1.1280.992908
ORF1ab/nsp725S25LtCatTa133133B.1.5010.977941
ORF1ab/nsp725S25LtCatTa122122B.1.1.70.000109
ORF1ab/nsp725S25LtCatTa110110B.1.4951
ORF1ab/nsp725S25LtCatTa103103B.1.20.000907
ORF1ab/nsp725S25LtCatTa100100AY.250.000601
ORF1ab/nsp725S25LtCatTa8989AY.1030.000553
ORF1ab/nsp725S25LtCatTa8787B.1.5070.977528
ORF1ab/nsp725S25LtCatTa7777B.1.617.20.00029
ORF1ab/nsp725S25LtCatTa6161B.1.2400.013149
ORF1ab/nsp725S25LtCatTa5959B.1.10.00107
ORF1ab/nsp725S25LtCatTa5858AY.4.50.006235
ORF1ab/nsp725S25LtCatTa5656AY.30.000557
ORF1ab/nsp725S25LtCatTa5555AY.50.001136
ORF1ab/nsp725S25LtCatTa5353B.1.6040.913793
ORF1ab/nsp725S25LtCatTa5353B.1.6370.003873
ORF1ab/nsp725S25LtCatTa4949B.1.4981
ORF1ab/nsp725S25LtCatTa4444B.1.3591
ORF1ab/nsp725S25LtCatTa4343AY.46.20.027319
ORF1ab/nsp725S25LtCatTa4242B.1.1.3731
ORF1ab/nsp725S25LtCatTa3939B.1.4931
ORF1ab/nsp725S25LtCatTa3939B.1.5081
ORF1ab/nsp725S25LtCatTa3838AY.390.000939
ORF1ab/nsp725S25LtCatTa3737B.1.5060.880952
ORF1ab/nsp725S25LtCatTa3232AY.430.000142
ORF1ab/nsp725S25LtCatTa3232B.1.5041
ORF1ab/nsp725S25LtCatTa2830AY.440.00017
ORF1ab/nsp725S25LtCatTa2929B.1.4941
ORF1ab/nsp725S25LtCatTa2727B.1.3510.000803
ORF1ab/nsp725S25LtCatTa2727B.1.4290.000635
ORF1ab/nsp725S25LtCatTa2525AY.200.000972
ORF1ab/nsp725S25LtCatTa2525B.1.5960.002178
ORF1ab/nsp725S25LtCatTa2525B.1.6151
ORF1ab/nsp725S25LtCatTa2424AY.1190.000847
ORF1ab/nsp725S25LtCatTa2424B.1.1.2220.004896
ORF1ab/nsp725S25LtCatTa2424B.1.1770.000316
ORF1ab/nsp725S25LtCatTa2424B.1.6110.96
ORF1ab/nsp725S25LtCatTa2121AY.39.10.000832
ORF1ab/nsp725S25LtCatTa2020B.1.3090.952381
ORF1ab/nsp725S25LtCatTa1919B.1.5021
ORF1ab/nsp725S25LtCatTa1717B.1.5260.0004
ORF1ab/nsp725S25LtCatTa1616AY.1180.001002
ORF1ab/nsp725S25LtCatTa1616B.1.6090.00767
ORF1ab/nsp725S25LtCatTa1515AY.1020.000398
ORF1ab/nsp725S25LtCatTa1414AY.330.000935
ORF1ab/nsp725S25LtCatTa1414B.1.3370.078212
ORF1ab/nsp725S25LtCatTa1414B.1.5000.736842
ORF1ab/nsp725S25LtCatTa1313B.1.5610.005161
ORF1ab/nsp725S25LtCatTa1313B.1.5970.060185
ORF1ab/nsp725S25LtCatTa1111AY.4.20.000239
ORF1ab/nsp725S25LtCatTa1111AY.60.000452
ORF1ab/nsp725S25LtCatTa1111B.1.2210.000781
ORF1ab/nsp725S25LtCatTa1010B.1.1.700.003411
ORF1ab/nsp725S25LtCatTa1010B.1.110.30.007184
ORF1ab/nsp725S25LtCatTa1010B.1.36.290.005173
ORF1ab/nsp725S25LtCatTa99AY.290.000142
ORF1ab/nsp725S25LtCatTa99AY.750.000504
ORF1ab/nsp725S25LtCatTa99AY.980.000711
ORF1ab/nsp725S25LtCatTa99B.1.4270.000454
ORF1ab/nsp725S25LtCatTa99B.1.499.11
ORF1ab/nsp725S25LtCatTa77AY.940.003099
ORF1ab/nsp725S25LtCatTa77B.1.1.4640.010309
ORF1ab/nsp725S25LtCatTa77B.1.177.810.001325
ORF1ab/nsp725S25LtCatTa77B.1.4680.04
ORF1ab/nsp725S25LtCatTa77B.1.4960.875
ORF1ab/nsp725S25LtCatTa77R.10.00063
ORF1ab/nsp725S25LtCatTa66AY.340.000582
ORF1ab/nsp725S25LtCatTa66B0.000767
ORF1ab/nsp725S25LtCatTa66B.1.1600.000187
ORF1ab/nsp725S25LtCatTa55AY.1000.00023
ORF1ab/nsp725S25LtCatTa55AY.260.000142
ORF1ab/nsp725S25LtCatTa55AY.460.00052
ORF1ab/nsp725S25LtCatTa55B.1.1.280.001556
ORF1ab/nsp725S25LtCatTa55B.1.3670.003962
ORF1ab/nsp725S25LtCatTa55B.1.3830.045045
ORF1ab/nsp725S25LtCatTa240.111111
ORF1ab/nsp725S25LtCatTa44AY.1130.00057
ORF1ab/nsp725S25LtCatTa44AY.1140.000924
ORF1ab/nsp725S25LtCatTa44AY.1200.000149
ORF1ab/nsp725S25LtCatTa44AY.120.10.001284
ORF1ab/nsp725S25LtCatTa44AY.46.60.000289
ORF1ab/nsp725S25LtCatTa44B.1.1.5230.00625
ORF1ab/nsp725S25LtCatTa44B.1.1570.01194
ORF1ab/nsp725S25LtCatTa44B.1.360.000584
ORF1ab/nsp725S25LtCatTa44B.1.3620.006163
ORF1ab/nsp725S25LtCatTa44B.1.3980.011905
ORF1ab/nsp725S25LtCatTa44B.1.5460.014815
ORF1ab/nsp725S25LtCatTa44B.1.617.10.000516
ORF1ab/nsp725S25LtCatTa44P.10.000063
ORF1ab/nsp725S25LtCatTa33AY.116.10.000934
ORF1ab/nsp725S25LtCatTa33AY.420.000121
ORF1ab/nsp725S25LtCatTa33AY.740.000347
ORF1ab/nsp725S25LtCatTa33AY.9.20.00011
ORF1ab/nsp725S25LtCatTa33B.1.1.370.000579
ORF1ab/nsp725S25LtCatTa33B.1.177.440.001557
ORF1ab/nsp725S25LtCatTa33B.1.3020.04
ORF1ab/nsp725S25LtCatTa33B.1.595.30.078947
ORF1ab/nsp725S25LtCatTa33B.1.6210.000266
ORF1ab/nsp725S25LtCatTa22A0.000774
ORF1ab/nsp725S25LtCatTa22AU.20.004843
ORF1ab/nsp725S25LtCatTa22AY.1160.000574
ORF1ab/nsp725S25LtCatTa22AY.1210.000271
ORF1ab/nsp725S25LtCatTa22AY.160.000759
ORF1ab/nsp725S25LtCatTa22AY.230.000139
ORF1ab/nsp725S25LtCatTa22AY.270.000129
ORF1ab/nsp725S25LtCatTa22AY.98.10.000097
ORF1ab/nsp725S25LtCatTa22AY.99.20.000184
ORF1ab/nsp725S25LtCatTa22B.1.1.2140.000111
ORF1ab/nsp725S25LtCatTa22B.1.1.2690.002706
ORF1ab/nsp725S25LtCatTa22B.1.1.2940.002532
ORF1ab/nsp725S25LtCatTa22B.1.1.2970.004474
ORF1ab/nsp725S25LtCatTa22B.1.1.3040.005618
ORF1ab/nsp725S25LtCatTa22B.1.1.3480.001592
ORF1ab/nsp725S25LtCatTa22B.1.1.3620.011236
ORF1ab/nsp725S25LtCatTa22B.1.1.3980.006452
ORF1ab/nsp725S25LtCatTa22B.1.1.4090.005666
ORF1ab/nsp725S25LtCatTa22B.1.1.500.001358
ORF1ab/nsp725S25LtCatTa22B.1.1.5260.007092
ORF1ab/nsp725S25LtCatTa22B.1.1260.002551
ORF1ab/nsp725S25LtCatTa22B.1.177.560.001335
ORF1ab/nsp725S25LtCatTa22B.1.177.730.001133
ORF1ab/nsp725S25LtCatTa22B.1.2580.000133
ORF1ab/nsp725S25LtCatTa22B.1.3330.021053
ORF1ab/nsp725S25LtCatTa22B.1.3490.00143
ORF1ab/nsp725S25LtCatTa22B.1.36.180.00084
ORF1ab/nsp725S25LtCatTa22B.1.3810.015625
ORF1ab/nsp725S25LtCatTa22B.1.4340.105263
ORF1ab/nsp725S25LtCatTa22B.1.5410.00885
ORF1ab/nsp725S25LtCatTa22B.1.5820.000981
ORF1ab/nsp725S25LtCatTa22C.380.016129
ORF1ab/nsp725S25LtCatTa22P.1.100.000539
ORF1ab/nsp725S25LtCatTa22Q.10.000253
ORF1ab/nsp725S25LtCatTa11A.210.00277
ORF1ab/nsp725S25LtCatTa11AY.1040.001984
ORF1ab/nsp725S25LtCatTa11AY.1080.001103
ORF1ab/nsp725S25LtCatTa11AY.140.000088
ORF1ab/nsp725S25LtCatTa11AY.39.1.10.000725
ORF1ab/nsp725S25LtCatTa11AY.4.2.10.000149
ORF1ab/nsp725S25LtCatTa11AY.450.000122
ORF1ab/nsp725S25LtCatTa11AY.46.40.000165
ORF1ab/nsp725S25LtCatTa11AY.470.000031
ORF1ab/nsp725S25LtCatTa11AY.5.40.000277
ORF1ab/nsp725S25LtCatTa11AY.510.000909
ORF1ab/nsp725S25LtCatTa11AY.530.000288
ORF1ab/nsp725S25LtCatTa11AY.540.000095
ORF1ab/nsp725S25LtCatTa11AY.550.000917
ORF1ab/nsp725S25LtCatTa11AY.570.000656
ORF1ab/nsp725S25LtCatTa11AY.870.000833
ORF1ab/nsp725S25LtCatTa11AY.880.000884
ORF1ab/nsp725S25LtCatTa11AY.950.000761
ORF1ab/nsp725S25LtCatTa11AY.99.10.001553
ORF1ab/nsp725S25LtCatTa11B.1.1.10.000327
ORF1ab/nsp725S25LtCatTa11B.1.1.120.007463
ORF1ab/nsp725S25LtCatTa11B.1.1.1700.001247
ORF1ab/nsp725S25LtCatTa11B.1.1.1750.076923
ORF1ab/nsp725S25LtCatTa11B.1.1.2360.006897
ORF1ab/nsp725S25LtCatTa11B.1.1.2740.005051
ORF1ab/nsp725S25LtCatTa11B.1.1.3060.000438
ORF1ab/nsp725S25LtCatTa11B.1.1.3170.000412
ORF1ab/nsp725S25LtCatTa11B.1.1.3260.001761
ORF1ab/nsp725S25LtCatTa11B.1.1.3330.001076
ORF1ab/nsp725S25LtCatTa11B.1.1.3350.012987
ORF1ab/nsp725S25LtCatTa11B.1.1.340.013158
ORF1ab/nsp725S25LtCatTa11B.1.1.3720.000689
ORF1ab/nsp725S25LtCatTa11B.1.1.3880.045455
ORF1ab/nsp725S25LtCatTa11B.1.1.4160.000905
ORF1ab/nsp725S25LtCatTa11B.1.1.450.014085
ORF1ab/nsp725S25LtCatTa11B.1.1.4850.016667
ORF1ab/nsp725S25LtCatTa11B.1.1.560.017857
ORF1ab/nsp725S25LtCatTa11B.1.1.80.003584
ORF1ab/nsp725S25LtCatTa11B.1.1150.021739
ORF1ab/nsp725S25LtCatTa11B.1.1400.018868
ORF1ab/nsp725S25LtCatTa11B.1.1460.004237
ORF1ab/nsp725S25LtCatTa11B.1.160.320.004292
ORF1ab/nsp725S25LtCatTa11B.1.1670.007812
ORF1ab/nsp725S25LtCatTa11B.1.177.160.000664
ORF1ab/nsp725S25LtCatTa11B.1.177.180.00116
ORF1ab/nsp725S25LtCatTa11B.1.177.210.000076
ORF1ab/nsp725S25LtCatTa11B.1.177.350.000691
ORF1ab/nsp725S25LtCatTa11B.1.177.40.000211
ORF1ab/nsp725S25LtCatTa11B.1.177.50.001242
ORF1ab/nsp725S25LtCatTa11B.1.177.600.000218
ORF1ab/nsp725S25LtCatTa11B.1.177.70.000165
ORF1ab/nsp725S25LtCatTa11B.1.1890.004292
ORF1ab/nsp725S25LtCatTa11B.1.2120.016667
ORF1ab/nsp725S25LtCatTa11B.1.2220.001692
ORF1ab/nsp725S25LtCatTa11B.1.2320.000537
ORF1ab/nsp725S25LtCatTa11B.1.2350.002519
ORF1ab/nsp725S25LtCatTa11B.1.2430.00007
ORF1ab/nsp725S25LtCatTa11B.1.3010.005917
ORF1ab/nsp725S25LtCatTa11B.1.3160.111111
ORF1ab/nsp725S25LtCatTa11B.1.351.20.000303
ORF1ab/nsp725S25LtCatTa11B.1.36.170.000494
ORF1ab/nsp725S25LtCatTa11B.1.4000.000429
ORF1ab/nsp725S25LtCatTa11B.1.4220.000812
ORF1ab/nsp725S25LtCatTa11B.1.4260.001009
ORF1ab/nsp725S25LtCatTa11B.1.4280.00102
ORF1ab/nsp725S25LtCatTa11B.1.438.10.000107
ORF1ab/nsp725S25LtCatTa11B.1.4530.003236
ORF1ab/nsp725S25LtCatTa11B.1.4660.023256
ORF1ab/nsp725S25LtCatTa11B.1.4740.001901
ORF1ab/nsp725S25LtCatTa11B.1.5170.000427
ORF1ab/nsp725S25LtCatTa11B.1.5640.000426
ORF1ab/nsp725S25LtCatTa11B.1.5740.002151
ORF1ab/nsp725S25LtCatTa11B.1.5750.000303
ORF1ab/nsp725S25LtCatTa11B.1.5950.000261
ORF1ab/nsp725S25LtCatTa11B.1.6010.030303
ORF1ab/nsp725S25LtCatTa11B.1.6050.005952
ORF1ab/nsp725S25LtCatTa11B.1.6120.002653
ORF1ab/nsp725S25LtCatTa11B.1.6190.000871
ORF1ab/nsp725S25LtCatTa11B.1.6250.002353
ORF1ab/nsp725S25LtCatTa11B.1.6270.00202
ORF1ab/nsp725S25LtCatTa11B.1.6280.000352
ORF1ab/nsp725S25LtCatTa11B.1.760.011364
ORF1ab/nsp725S25LtCatTa11B.1.810.021277
ORF1ab/nsp725S25LtCatTa11B.1.9.50.005682
ORF1ab/nsp725S25LtCatTa11B.4.10.018868
ORF1ab/nsp725S25LtCatTa11C.10.002392
ORF1ab/nsp725S25LtCatTa11C.370.000116
ORF1ab/nsp725S25LtCatTa11P.1.170.000162
ORF1ab/nsp725S25LtCatTa11P.1.20.001156
ORF1ab/nsp725S25LtCatTa11P.20.000187
ORF1ab/nsp725S25LtCatTa11R.20.014493

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.