CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 16

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp716V16VV3875VsyngtTgtC6395000.78247311888-11890
ORF1ab/nsp716V16VV3875VsyngtTgtA639950.1486711888-11890
ORF1ab/nsp716V16VV3875VsyngtTgtG639440.068857611888-11890
ORF1ab/nsp716V16IV3875InonsynGttAtt7171111888-11890
ORF1ab/nsp716V16FV3875FnonsynGttTtt2222111888-11890
ORF1ab/nsp716V16del1V3875del1delgTtg-t1313111888-11890
ORF1ab/nsp716V16GV3875GnonsyngTtgGt1212111888-11890
ORF1ab/nsp716V16AV3875AnonsyngTtgCt99111888-11890
ORF1ab/nsp716V16delV3875deldelGTT---44111888-11890
ORF1ab/nsp716V16del2V3875del2delgTTg--22111888-11890
ORF1ab/nsp716V16LV3875LnonsynGttCtt11111888-11890
ORF1ab/nsp716V16DV3875DnonsyngTtgAt11111888-11890

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp716V16VgtTgtC500639All0.000096
ORF1ab/nsp716V16VgtTgtA95639All0.000018
ORF1ab/nsp716V16VgtTgtG44639All0.000008
ORF1ab/nsp716V16VgtTgtC216216B.1.5990.788321
ORF1ab/nsp716V16VgtTgtC108108B.1.617.20.000407
ORF1ab/nsp716V16VgtTgtA8990AY.250.000535
ORF1ab/nsp716V16VgtTgtC190AY.250.000006
ORF1ab/nsp716V16VgtTgtC7373AY.430.000323
ORF1ab/nsp716V16IGttAtt7171All0.000014
ORF1ab/nsp716V16FGttTtt2222All0.000004
ORF1ab/nsp716V16VgtTgtG2121B.1.2650.026684
ORF1ab/nsp716V16VgtTgtC1414B.10.000128
ORF1ab/nsp716V16del1gTtg-t1313All0.000002
ORF1ab/nsp716V16GgTtgGt1212All0.000002
ORF1ab/nsp716V16VgtTgtC810AY.390.000198
ORF1ab/nsp716V16VgtTgtG210AY.390.000049
ORF1ab/nsp716V16VgtTgtC1010AY.40.000016
ORF1ab/nsp716V16AgTtgCt99All0.000002
ORF1ab/nsp716V16VgtTgtC89AY.1020.000212
ORF1ab/nsp716V16VgtTgtG19AY.1020.000027
ORF1ab/nsp716V16VgtTgtC59B.1.1.70.000004
ORF1ab/nsp716V16VgtTgtG49B.1.1.70.000004
ORF1ab/nsp716V16IGttAtt88AY.250.000048
ORF1ab/nsp716V16FGttTtt88P.1.140.000382
ORF1ab/nsp716V16IGttAtt77P.1.150.001626
ORF1ab/nsp716V16IGttAtt66AY.40.000009
ORF1ab/nsp716V16VgtTgtC66AY.440.000037
ORF1ab/nsp716V16IGttAtt66B.1.617.20.000023
ORF1ab/nsp716V16IGttAtt55B.1.4270.000252
ORF1ab/nsp716V16VgtTgtG55B.1.4290.000118
ORF1ab/nsp716V16VgtTgtC55P.10.000079
ORF1ab/nsp716V16VgtTgtC55Q.10.000632
ORF1ab/nsp716V16del1gTtg-t440.222222
ORF1ab/nsp716V16IGttAtt44AE.80.001956
ORF1ab/nsp716V16delGTT---44All0.000001
ORF1ab/nsp716V16VgtTgtC44AY.120.10.001284
ORF1ab/nsp716V16IGttAtt44B.1.1.70.000004
ORF1ab/nsp716V16GgTtgGt44B.1.1.70.000004
ORF1ab/nsp716V16IGttAtt44B.1.4800.00995
ORF1ab/nsp716V16VgtTgtG33AY.9.20.00011
ORF1ab/nsp716V16IGttAtt33B.1.1.390.001529
ORF1ab/nsp716V16FGttTtt33B.1.1.70.000003
ORF1ab/nsp716V16VgtTgtC33B.1.110.30.002155
ORF1ab/nsp716V16IGttAtt33B.1.20.000026
ORF1ab/nsp716V16VgtTgtC23B.1.2430.000139
ORF1ab/nsp716V16VgtTgtG13B.1.2430.00007
ORF1ab/nsp716V16VgtTgtC33B.1.3110.000824
ORF1ab/nsp716V16IGttAtt33P.10.000047
ORF1ab/nsp716V16VgtTgtC33P.30.004785
ORF1ab/nsp716V16del2gTTg--22All0
ORF1ab/nsp716V16GgTtgGt22AY.1170.000169
ORF1ab/nsp716V16VgtTgtC22AY.120.000632
ORF1ab/nsp716V16VgtTgtC22AY.1200.000074
ORF1ab/nsp716V16AgTtgCt22AY.260.000057
ORF1ab/nsp716V16IGttAtt22AY.430.000009
ORF1ab/nsp716V16GgTtgGt22AY.470.000062
ORF1ab/nsp716V16VgtTgtA22AY.50.000041
ORF1ab/nsp716V16AgTtgCt22B.1.10.000036
ORF1ab/nsp716V16VgtTgtG22B.1.1.3060.000877
ORF1ab/nsp716V16del1gTtg-t22B.1.1.70.000002
ORF1ab/nsp716V16FGttTtt22B.1.20.000018
ORF1ab/nsp716V16GgTtgGt22B.1.20.000018
ORF1ab/nsp716V16VgtTgtC22B.1.3770.009132
ORF1ab/nsp716V16IGttAtt22C.320.046512
ORF1ab/nsp716V16VgtTgtA22C.350.001548
ORF1ab/nsp716V16IGttAtt22P.20.000373
ORF1ab/nsp716V16LGttCtt11All0
ORF1ab/nsp716V16DgTtgAt11All0
ORF1ab/nsp716V16FGttTtt11AU.30.00211
ORF1ab/nsp716V16AgTtgCt11AY.1000.000046
ORF1ab/nsp716V16IGttAtt11AY.1020.000027
ORF1ab/nsp716V16VgtTgtC11AY.1030.000006
ORF1ab/nsp716V16del1gTtg-t11AY.1030.000006
ORF1ab/nsp716V16IGttAtt11AY.1170.000085
ORF1ab/nsp716V16IGttAtt11AY.1180.000063
ORF1ab/nsp716V16DgTtgAt11AY.1180.000063
ORF1ab/nsp716V16VgtTgtC11AY.1190.000035
ORF1ab/nsp716V16VgtTgtC11AY.200.000039
ORF1ab/nsp716V16VgtTgtC11AY.30.00001
ORF1ab/nsp716V16VgtTgtC11AY.34.10.00051
ORF1ab/nsp716V16AgTtgCt11AY.390.000025
ORF1ab/nsp716V16IGttAtt11AY.390.000025
ORF1ab/nsp716V16AgTtgCt11AY.40.000002
ORF1ab/nsp716V16VgtTgtA11AY.4.20.000022
ORF1ab/nsp716V16delGTT---11AY.4.50.000107
ORF1ab/nsp716V16LGttCtt11AY.4.50.000107
ORF1ab/nsp716V16IGttAtt11AY.440.000006
ORF1ab/nsp716V16FGttTtt11AY.440.000006
ORF1ab/nsp716V16VgtTgtC11AY.460.000104
ORF1ab/nsp716V16VgtTgtC11AY.46.40.000165
ORF1ab/nsp716V16GgTtgGt11AY.670.000464
ORF1ab/nsp716V16VgtTgtA11AY.99.20.000092
ORF1ab/nsp716V16GgTtgGt11B0.000128
ORF1ab/nsp716V16delGTT---11B.10.000009
ORF1ab/nsp716V16IGttAtt11B.10.000009
ORF1ab/nsp716V16del1gTtg-t11B.10.000009
ORF1ab/nsp716V16FGttTtt11B.10.000009
ORF1ab/nsp716V16VgtTgtC11B.1.10.000018
ORF1ab/nsp716V16del1gTtg-t11B.1.10.000018
ORF1ab/nsp716V16IGttAtt11B.1.1.100.001115
ORF1ab/nsp716V16FGttTtt11B.1.1.1220.045455
ORF1ab/nsp716V16VgtTgtC11B.1.1.1980.001468
ORF1ab/nsp716V16VgtTgtG11B.1.1.3180.000302
ORF1ab/nsp716V16FGttTtt11B.1.1.3180.000302
ORF1ab/nsp716V16del1gTtg-t11B.1.1.3710.010417
ORF1ab/nsp716V16AgTtgCt11B.1.1.3750.011905
ORF1ab/nsp716V16VgtTgtG11B.1.1.4340.000349
ORF1ab/nsp716V16IGttAtt11B.1.1.4340.000349
ORF1ab/nsp716V16del2gTTg--11B.1.1.70.000001
ORF1ab/nsp716V16delGTT---11B.1.1.70.000001
ORF1ab/nsp716V16FGttTtt11B.1.1600.000031
ORF1ab/nsp716V16AgTtgCt11B.1.1770.000013
ORF1ab/nsp716V16VgtTgtC11B.1.177.210.000076
ORF1ab/nsp716V16del1gTtg-t11B.1.177.570.000281
ORF1ab/nsp716V16VgtTgtC11B.1.177.650.000665
ORF1ab/nsp716V16VgtTgtC11B.1.177.750.001041
ORF1ab/nsp716V16VgtTgtG11B.1.20.000009
ORF1ab/nsp716V16VgtTgtC11B.1.2400.000216
ORF1ab/nsp716V16VgtTgtC11B.1.3020.013333
ORF1ab/nsp716V16VgtTgtC11B.1.360.000146
ORF1ab/nsp716V16VgtTgtC11B.1.3670.000792
ORF1ab/nsp716V16VgtTgtC11B.1.3690.000285
ORF1ab/nsp716V16IGttAtt11B.1.4000.000429
ORF1ab/nsp716V16VgtTgtC11B.1.4000.000429
ORF1ab/nsp716V16IGttAtt11B.1.5260.000024
ORF1ab/nsp716V16FGttTtt11B.1.5640.000426
ORF1ab/nsp716V16del1gTtg-t11B.1.5820.000491
ORF1ab/nsp716V16VgtTgtG11B.1.5820.000491
ORF1ab/nsp716V16VgtTgtC11B.1.5960.000087
ORF1ab/nsp716V16del2gTTg--11B.1.617.20.000004
ORF1ab/nsp716V16FGttTtt11B.1.6370.000073
ORF1ab/nsp716V16IGttAtt11B.1.6370.000073
ORF1ab/nsp716V16VgtTgtC11B.550.00295
ORF1ab/nsp716V16FGttTtt11B.60.00091
ORF1ab/nsp716V16IGttAtt11D.20.000075
ORF1ab/nsp716V16delGTT---11N.40.004255
ORF1ab/nsp716V16del1gTtg-t11P.10.000016
ORF1ab/nsp716V16VgtTgtG11Q.80.000165