CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp7 : CodonNum = 16

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp716V16VV3875VsyngtTgtC6395000.78247311888-11890
ORF1ab/nsp716V16VV3875VsyngtTgtA639950.1486711888-11890
ORF1ab/nsp716V16VV3875VsyngtTgtG639440.068857611888-11890
ORF1ab/nsp716V16IV3875InonsynGttAtt7171111888-11890
ORF1ab/nsp716V16FV3875FnonsynGttTtt2222111888-11890
ORF1ab/nsp716V16del1V3875del1delgTtg-t1313111888-11890
ORF1ab/nsp716V16GV3875GnonsyngTtgGt1212111888-11890
ORF1ab/nsp716V16AV3875AnonsyngTtgCt99111888-11890
ORF1ab/nsp716V16delV3875deldelGTT---44111888-11890
ORF1ab/nsp716V16del2V3875del2delgTTg--22111888-11890
ORF1ab/nsp716V16LV3875LnonsynGttCtt11111888-11890
ORF1ab/nsp716V16DV3875DnonsyngTtgAt11111888-11890

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp716V16VgtTgtC500639All0.000096
ORF1ab/nsp716V16VgtTgtA95639All0.000018
ORF1ab/nsp716V16VgtTgtG44639All0.000008
ORF1ab/nsp716V16VgtTgtC216216B.1.5990.788321
ORF1ab/nsp716V16VgtTgtC108108B.1.617.20.000407
ORF1ab/nsp716V16VgtTgtA8990AY.250.000535
ORF1ab/nsp716V16VgtTgtC190AY.250.000006
ORF1ab/nsp716V16VgtTgtC7373AY.430.000323
ORF1ab/nsp716V16IGttAtt7171All0.000014
ORF1ab/nsp716V16FGttTtt2222All0.000004
ORF1ab/nsp716V16VgtTgtG2121B.1.2650.026684
ORF1ab/nsp716V16VgtTgtC1414B.10.000128
ORF1ab/nsp716V16del1gTtg-t1313All0.000002
ORF1ab/nsp716V16GgTtgGt1212All0.000002
ORF1ab/nsp716V16VgtTgtC810AY.390.000198
ORF1ab/nsp716V16VgtTgtG210AY.390.000049
ORF1ab/nsp716V16VgtTgtC1010AY.40.000016
ORF1ab/nsp716V16AgTtgCt99All0.000002
ORF1ab/nsp716V16VgtTgtC89AY.1020.000212
ORF1ab/nsp716V16VgtTgtG19AY.1020.000027
ORF1ab/nsp716V16VgtTgtC59B.1.1.70.000004
ORF1ab/nsp716V16VgtTgtG49B.1.1.70.000004
ORF1ab/nsp716V16IGttAtt88AY.250.000048
ORF1ab/nsp716V16FGttTtt88P.1.140.000382
ORF1ab/nsp716V16IGttAtt77P.1.150.001626
ORF1ab/nsp716V16IGttAtt66AY.40.000009
ORF1ab/nsp716V16VgtTgtC66AY.440.000037
ORF1ab/nsp716V16IGttAtt66B.1.617.20.000023
ORF1ab/nsp716V16IGttAtt55B.1.4270.000252
ORF1ab/nsp716V16VgtTgtG55B.1.4290.000118
ORF1ab/nsp716V16VgtTgtC55P.10.000079
ORF1ab/nsp716V16VgtTgtC55Q.10.000632
ORF1ab/nsp716V16del1gTtg-t440.222222
ORF1ab/nsp716V16IGttAtt44AE.80.001956
ORF1ab/nsp716V16delGTT---44All0.000001
ORF1ab/nsp716V16VgtTgtC44AY.120.10.001284
ORF1ab/nsp716V16IGttAtt44B.1.1.70.000004
ORF1ab/nsp716V16GgTtgGt44B.1.1.70.000004
ORF1ab/nsp716V16IGttAtt44B.1.4800.00995
ORF1ab/nsp716V16VgtTgtG33AY.9.20.00011
ORF1ab/nsp716V16IGttAtt33B.1.1.390.001529
ORF1ab/nsp716V16FGttTtt33B.1.1.70.000003
ORF1ab/nsp716V16VgtTgtC33B.1.110.30.002155
ORF1ab/nsp716V16IGttAtt33B.1.20.000026
ORF1ab/nsp716V16VgtTgtC23B.1.2430.000139
ORF1ab/nsp716V16VgtTgtG13B.1.2430.00007
ORF1ab/nsp716V16VgtTgtC33B.1.3110.000824
ORF1ab/nsp716V16IGttAtt33P.10.000047
ORF1ab/nsp716V16VgtTgtC33P.30.004785
ORF1ab/nsp716V16del2gTTg--22All0
ORF1ab/nsp716V16GgTtgGt22AY.1170.000169
ORF1ab/nsp716V16VgtTgtC22AY.120.000632
ORF1ab/nsp716V16VgtTgtC22AY.1200.000074
ORF1ab/nsp716V16AgTtgCt22AY.260.000057
ORF1ab/nsp716V16IGttAtt22AY.430.000009
ORF1ab/nsp716V16GgTtgGt22AY.470.000062
ORF1ab/nsp716V16VgtTgtA22AY.50.000041
ORF1ab/nsp716V16AgTtgCt22B.1.10.000036
ORF1ab/nsp716V16VgtTgtG22B.1.1.3060.000877
ORF1ab/nsp716V16del1gTtg-t22B.1.1.70.000002
ORF1ab/nsp716V16FGttTtt22B.1.20.000018
ORF1ab/nsp716V16GgTtgGt22B.1.20.000018
ORF1ab/nsp716V16VgtTgtC22B.1.3770.009132
ORF1ab/nsp716V16IGttAtt22C.320.046512
ORF1ab/nsp716V16VgtTgtA22C.350.001548
ORF1ab/nsp716V16IGttAtt22P.20.000373
ORF1ab/nsp716V16LGttCtt11All0
ORF1ab/nsp716V16DgTtgAt11All0
ORF1ab/nsp716V16FGttTtt11AU.30.00211
ORF1ab/nsp716V16AgTtgCt11AY.1000.000046
ORF1ab/nsp716V16IGttAtt11AY.1020.000027
ORF1ab/nsp716V16VgtTgtC11AY.1030.000006
ORF1ab/nsp716V16del1gTtg-t11AY.1030.000006
ORF1ab/nsp716V16IGttAtt11AY.1170.000085
ORF1ab/nsp716V16IGttAtt11AY.1180.000063
ORF1ab/nsp716V16DgTtgAt11AY.1180.000063
ORF1ab/nsp716V16VgtTgtC11AY.1190.000035
ORF1ab/nsp716V16VgtTgtC11AY.200.000039
ORF1ab/nsp716V16VgtTgtC11AY.30.00001
ORF1ab/nsp716V16VgtTgtC11AY.34.10.00051
ORF1ab/nsp716V16AgTtgCt11AY.390.000025
ORF1ab/nsp716V16IGttAtt11AY.390.000025
ORF1ab/nsp716V16AgTtgCt11AY.40.000002
ORF1ab/nsp716V16VgtTgtA11AY.4.20.000022
ORF1ab/nsp716V16delGTT---11AY.4.50.000107
ORF1ab/nsp716V16LGttCtt11AY.4.50.000107
ORF1ab/nsp716V16IGttAtt11AY.440.000006
ORF1ab/nsp716V16FGttTtt11AY.440.000006
ORF1ab/nsp716V16VgtTgtC11AY.460.000104
ORF1ab/nsp716V16VgtTgtC11AY.46.40.000165
ORF1ab/nsp716V16GgTtgGt11AY.670.000464
ORF1ab/nsp716V16VgtTgtA11AY.99.20.000092
ORF1ab/nsp716V16GgTtgGt11B0.000128
ORF1ab/nsp716V16delGTT---11B.10.000009
ORF1ab/nsp716V16IGttAtt11B.10.000009
ORF1ab/nsp716V16del1gTtg-t11B.10.000009
ORF1ab/nsp716V16FGttTtt11B.10.000009
ORF1ab/nsp716V16VgtTgtC11B.1.10.000018
ORF1ab/nsp716V16del1gTtg-t11B.1.10.000018
ORF1ab/nsp716V16IGttAtt11B.1.1.100.001115
ORF1ab/nsp716V16FGttTtt11B.1.1.1220.045455
ORF1ab/nsp716V16VgtTgtC11B.1.1.1980.001468
ORF1ab/nsp716V16VgtTgtG11B.1.1.3180.000302
ORF1ab/nsp716V16FGttTtt11B.1.1.3180.000302
ORF1ab/nsp716V16del1gTtg-t11B.1.1.3710.010417
ORF1ab/nsp716V16AgTtgCt11B.1.1.3750.011905
ORF1ab/nsp716V16VgtTgtG11B.1.1.4340.000349
ORF1ab/nsp716V16IGttAtt11B.1.1.4340.000349
ORF1ab/nsp716V16del2gTTg--11B.1.1.70.000001
ORF1ab/nsp716V16delGTT---11B.1.1.70.000001
ORF1ab/nsp716V16FGttTtt11B.1.1600.000031
ORF1ab/nsp716V16AgTtgCt11B.1.1770.000013
ORF1ab/nsp716V16VgtTgtC11B.1.177.210.000076
ORF1ab/nsp716V16del1gTtg-t11B.1.177.570.000281
ORF1ab/nsp716V16VgtTgtC11B.1.177.650.000665
ORF1ab/nsp716V16VgtTgtC11B.1.177.750.001041
ORF1ab/nsp716V16VgtTgtG11B.1.20.000009
ORF1ab/nsp716V16VgtTgtC11B.1.2400.000216
ORF1ab/nsp716V16VgtTgtC11B.1.3020.013333
ORF1ab/nsp716V16VgtTgtC11B.1.360.000146
ORF1ab/nsp716V16VgtTgtC11B.1.3670.000792
ORF1ab/nsp716V16VgtTgtC11B.1.3690.000285
ORF1ab/nsp716V16IGttAtt11B.1.4000.000429
ORF1ab/nsp716V16VgtTgtC11B.1.4000.000429
ORF1ab/nsp716V16IGttAtt11B.1.5260.000024
ORF1ab/nsp716V16FGttTtt11B.1.5640.000426
ORF1ab/nsp716V16del1gTtg-t11B.1.5820.000491
ORF1ab/nsp716V16VgtTgtG11B.1.5820.000491
ORF1ab/nsp716V16VgtTgtC11B.1.5960.000087
ORF1ab/nsp716V16del2gTTg--11B.1.617.20.000004
ORF1ab/nsp716V16FGttTtt11B.1.6370.000073
ORF1ab/nsp716V16IGttAtt11B.1.6370.000073
ORF1ab/nsp716V16VgtTgtC11B.550.00295
ORF1ab/nsp716V16FGttTtt11B.60.00091
ORF1ab/nsp716V16IGttAtt11D.20.000075
ORF1ab/nsp716V16delGTT---11N.40.004255
ORF1ab/nsp716V16del1gTtg-t11P.10.000016
ORF1ab/nsp716V16VgtTgtG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.