CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 91 | V91L | V3660L | nonsyn | Gtg | Ttg | 3241 | 3233 | 0.997532 | 11243-11245 |
ORF1ab/nsp6 | 91 | V91L | V3660L | nonsyn | Gtg | Ctg | 3241 | 8 | 0.00246837 | 11243-11245 |
Details of the mutation V91L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 3233 | 3241 | All | 0.000618 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 8 | 3241 | All | 0.000002 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2036 | 2036 | AY.5 | 0.042042 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 185 | 185 | B.1.617.2 | 0.000697 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 134 | 134 | B.1.1 | 0.002431 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 116 | 116 | AY.4 | 0.000181 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 91 | 93 | B.1.1.7 | 0.000081 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 2 | 93 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 67 | 67 | B.1.526 | 0.001575 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 55 | 55 | AY.20 | 0.002138 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 46 | 46 | AY.43 | 0.000204 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 36 | 36 | AY.102 | 0.000955 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 36 | 36 | B.1.1.294 | 0.04557 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 29 | 29 | B.1 | 0.000266 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 25 | 25 | B.1.407 | 0.892857 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 21 | 21 | AY.74 | 0.002429 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 16 | 17 | B.1.2 | 0.000141 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 1 | 17 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 13 | 14 | B.1.177 | 0.000171 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 1 | 14 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 12 | 12 | AY.47 | 0.000373 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 12 | 12 | B.1.110.3 | 0.008621 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 5 | 6 | B.1.232 | 0.002687 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 1 | 6 | B.1.232 | 0.000537 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 6 | 6 | B.1.466 | 0.139535 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | B.1.380 | 0.013245 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ctg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 91 | V91L | Gtg | Ttg | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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