CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 26 | V26V | V3595V | syn | gtC | gtT | 2401 | 2244 | 0.934611 | 11048-11050 |
ORF1ab/nsp6 | 26 | V26V | V3595V | syn | gtC | gtA | 2401 | 126 | 0.0524781 | 11048-11050 |
ORF1ab/nsp6 | 26 | V26V | V3595V | syn | gtC | gtG | 2401 | 31 | 0.0129113 | 11048-11050 |
Details of the mutation V26V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2244 | 2401 | All | 0.000429 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 126 | 2401 | All | 0.000024 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 31 | 2401 | All | 0.000006 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 344 | 421 | B.1.1.7 | 0.000308 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 53 | 421 | B.1.1.7 | 0.000047 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 24 | 421 | B.1.1.7 | 0.000021 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 251 | 252 | AY.103 | 0.001558 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 252 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 196 | 198 | B.1.1 | 0.003556 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 2 | 198 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 189 | 192 | B.1.617.2 | 0.000712 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 3 | 192 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 147 | 148 | AY.43 | 0.000651 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 148 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 124 | 124 | B.1.1.251 | 0.984127 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 108 | 111 | AY.25 | 0.00065 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 2 | 111 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 1 | 111 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 98 | 100 | B.1 | 0.000898 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 2 | 100 | B.1 | 0.000018 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 94 | 94 | AY.118 | 0.005889 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 94 | 94 | B.1.530 | 0.671429 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 31 | 59 | AY.3 | 0.000308 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 28 | 59 | AY.3 | 0.000278 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 53 | 58 | AY.4 | 0.000082 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 5 | 58 | AY.4 | 0.000008 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 52 | 52 | B.1.2 | 0.000458 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 41 | 41 | B.1.526 | 0.000964 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 32 | 32 | B.1.258 | 0.00213 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 26 | 30 | AY.44 | 0.000158 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 4 | 30 | AY.44 | 0.000024 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 23 | 23 | AY.107 | 0.010718 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 14 | 15 | B.1.351 | 0.000416 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 15 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 13 | 15 | P.1 | 0.000205 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 1 | 15 | P.1 | 0.000016 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 15 | P.1 | 0.000016 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 11 | 11 | B.1.1.1 | 0.003594 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 9 | 9 | B.1.177.60 | 0.001966 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 6 | 8 | 0.333333 | |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 2 | 8 | 0.111111 | |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 8 | 8 | B.1.396 | 0.005646 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 4 | 7 | AY.100 | 0.000184 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 7 | AY.100 | 0.000138 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 7 | B.1.177 | 0.000053 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 2 | 7 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 1 | 7 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 7 | B.1.177.81 | 0.000757 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 3 | 7 | B.1.177.81 | 0.000568 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 5 | AY.102 | 0.000106 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 5 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 5 | B | 0.000128 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 5 | 5 | B.1.420 | 0.052083 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 3 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 1 | 3 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 2 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 2 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 2 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtG | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtA | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.588.1 | 0.038462 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp6 | 26 | V26V | gtC | gtT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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