CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = V131V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6131V131VV3700VsyngtGgtT21333208130.97562511363-11365
ORF1ab/nsp6131V131VV3700VsyngtGgtA213334250.019922211363-11365
ORF1ab/nsp6131V131VV3700VsyngtGgtC21333950.0044531911363-11365

Details of the mutation V131V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6131V131VgtGgtT2081321333All0.003981
ORF1ab/nsp6131V131VgtGgtA42521333All0.000081
ORF1ab/nsp6131V131VgtGgtC9521333All0.000018
ORF1ab/nsp6131V131VgtGgtT88368836AY.7.10.99583
ORF1ab/nsp6131V131VgtGgtT50505050AY.70.989808
ORF1ab/nsp6131V131VgtGgtT17681768AY.7.20.988814
ORF1ab/nsp6131V131VgtGgtT658776B.1.1.70.000589
ORF1ab/nsp6131V131VgtGgtA99776B.1.1.70.000089
ORF1ab/nsp6131V131VgtGgtC19776B.1.1.70.000017
ORF1ab/nsp6131V131VgtGgtT615624AY.40.000957
ORF1ab/nsp6131V131VgtGgtA8624AY.40.000012
ORF1ab/nsp6131V131VgtGgtC1624AY.40.000002
ORF1ab/nsp6131V131VgtGgtT570605B.1.617.20.002146
ORF1ab/nsp6131V131VgtGgtC18605B.1.617.20.000068
ORF1ab/nsp6131V131VgtGgtA17605B.1.617.20.000064
ORF1ab/nsp6131V131VgtGgtT519519AY.1110.095055
ORF1ab/nsp6131V131VgtGgtT483486B.1.1.5190.01918
ORF1ab/nsp6131V131VgtGgtA3486B.1.1.5190.000119
ORF1ab/nsp6131V131VgtGgtT393403AY.430.001741
ORF1ab/nsp6131V131VgtGgtC7403AY.430.000031
ORF1ab/nsp6131V131VgtGgtA3403AY.430.000013
ORF1ab/nsp6131V131VgtGgtT110141AY.1020.002917
ORF1ab/nsp6131V131VgtGgtA17141AY.1020.000451
ORF1ab/nsp6131V131VgtGgtC14141AY.1020.000371
ORF1ab/nsp6131V131VgtGgtT137139AY.420.005512
ORF1ab/nsp6131V131VgtGgtA2139AY.420.00008
ORF1ab/nsp6131V131VgtGgtT98102AY.440.000597
ORF1ab/nsp6131V131VgtGgtA4102AY.440.000024
ORF1ab/nsp6131V131VgtGgtT9598AY.390.002348
ORF1ab/nsp6131V131VgtGgtC398AY.390.000074
ORF1ab/nsp6131V131VgtGgtA7478R.10.006661
ORF1ab/nsp6131V131VgtGgtT478R.10.00036
ORF1ab/nsp6131V131VgtGgtT7777B.1.2580.005124
ORF1ab/nsp6131V131VgtGgtT6376B.1.20.000555
ORF1ab/nsp6131V131VgtGgtA1376B.1.20.000114
ORF1ab/nsp6131V131VgtGgtT6372AY.250.000379
ORF1ab/nsp6131V131VgtGgtC972AY.250.000054
ORF1ab/nsp6131V131VgtGgtT5471AY.1030.000335
ORF1ab/nsp6131V131VgtGgtA1771AY.1030.000106
ORF1ab/nsp6131V131VgtGgtT6363B.1.1.1630.480916
ORF1ab/nsp6131V131VgtGgtA6363B.1.4441
ORF1ab/nsp6131V131VgtGgtA4754AY.610.004925
ORF1ab/nsp6131V131VgtGgtT754AY.610.000733
ORF1ab/nsp6131V131VgtGgtT5252AY.4.2.10.007747
ORF1ab/nsp6131V131VgtGgtT4851B.1.10.000871
ORF1ab/nsp6131V131VgtGgtA351B.1.10.000054
ORF1ab/nsp6131V131VgtGgtT3941AY.60.001604
ORF1ab/nsp6131V131VgtGgtC241AY.60.000082
ORF1ab/nsp6131V131VgtGgtT3940AY.50.000805
ORF1ab/nsp6131V131VgtGgtC140AY.50.000021
ORF1ab/nsp6131V131VgtGgtT3240B.10.000293
ORF1ab/nsp6131V131VgtGgtA640B.10.000055
ORF1ab/nsp6131V131VgtGgtC240B.10.000018
ORF1ab/nsp6131V131VgtGgtT3737AY.980.002923
ORF1ab/nsp6131V131VgtGgtT3437P.10.000536
ORF1ab/nsp6131V131VgtGgtA237P.10.000032
ORF1ab/nsp6131V131VgtGgtC137P.10.000016
ORF1ab/nsp6131V131VgtGgtT3233B.1.1770.000421
ORF1ab/nsp6131V131VgtGgtA133B.1.1770.000013
ORF1ab/nsp6131V131VgtGgtT2626AY.330.001736
ORF1ab/nsp6131V131VgtGgtT2525B.1.5260.000588
ORF1ab/nsp6131V131VgtGgtT2525B.1.5960.002178
ORF1ab/nsp6131V131VgtGgtT2324B.1.2430.0016
ORF1ab/nsp6131V131VgtGgtA124B.1.2430.00007
ORF1ab/nsp6131V131VgtGgtT2023AY.30.000199
ORF1ab/nsp6131V131VgtGgtC223AY.30.00002
ORF1ab/nsp6131V131VgtGgtA123AY.30.00001
ORF1ab/nsp6131V131VgtGgtT1622AY.200.000622
ORF1ab/nsp6131V131VgtGgtC522AY.200.000194
ORF1ab/nsp6131V131VgtGgtA122AY.200.000039
ORF1ab/nsp6131V131VgtGgtT2021B.1.4290.000471
ORF1ab/nsp6131V131VgtGgtC121B.1.4290.000024
ORF1ab/nsp6131V131VgtGgtT1819B.1.3510.000535
ORF1ab/nsp6131V131VgtGgtA119B.1.3510.00003
ORF1ab/nsp6131V131VgtGgtT1818B.1.1600.000561
ORF1ab/nsp6131V131VgtGgtT1717AY.110.022758
ORF1ab/nsp6131V131VgtGgtT1717AY.1200.000632
ORF1ab/nsp6131V131VgtGgtT1617AY.460.001665
ORF1ab/nsp6131V131VgtGgtA117AY.460.000104
ORF1ab/nsp6131V131VgtGgtT1616B.1.177.210.001224
ORF1ab/nsp6131V131VgtGgtT1315AY.4.20.000282
ORF1ab/nsp6131V131VgtGgtA215AY.4.20.000043
ORF1ab/nsp6131V131VgtGgtT1515AY.880.013263
ORF1ab/nsp6131V131VgtGgtT1515B.1.4920.105634
ORF1ab/nsp6131V131VgtGgtT1515P.30.023923
ORF1ab/nsp6131V131VgtGgtT1313AY.1130.001851
ORF1ab/nsp6131V131VgtGgtT1313AY.46.40.002139
ORF1ab/nsp6131V131VgtGgtT1313AY.9.10.001088
ORF1ab/nsp6131V131VgtGgtT1113AY.9.20.000404
ORF1ab/nsp6131V131VgtGgtA213AY.9.20.000073
ORF1ab/nsp6131V131VgtGgtT1313C.201
ORF1ab/nsp6131V131VgtGgtT912AY.1210.001218
ORF1ab/nsp6131V131VgtGgtA312AY.1210.000406
ORF1ab/nsp6131V131VgtGgtT1212P.1.120.005808
ORF1ab/nsp6131V131VgtGgtT1011AY.1190.000353
ORF1ab/nsp6131V131VgtGgtA111AY.1190.000035
ORF1ab/nsp6131V131VgtGgtT1010AY.750.00056
ORF1ab/nsp6131V131VgtGgtT99AY.1000.000414
ORF1ab/nsp6131V131VgtGgtT99AY.46.10.00924
ORF1ab/nsp6131V131VgtGgtT99AY.640.005357
ORF1ab/nsp6131V131VgtGgtT99AY.740.001041
ORF1ab/nsp6131V131VgtGgtT99AY.840.003937
ORF1ab/nsp6131V131VgtGgtA69B.1.258.170.000624
ORF1ab/nsp6131V131VgtGgtT39B.1.258.170.000312
ORF1ab/nsp6131V131VgtGgtT78AY.1060.002344
ORF1ab/nsp6131V131VgtGgtC18AY.1060.000335
ORF1ab/nsp6131V131VgtGgtT88AY.4.30.006734
ORF1ab/nsp6131V131VgtGgtT88AY.450.000973
ORF1ab/nsp6131V131VgtGgtT88B.1.36.180.003361
ORF1ab/nsp6131V131VgtGgtT88B.1.4270.000404
ORF1ab/nsp6131V131VgtGgtT67AY.1160.001721
ORF1ab/nsp6131V131VgtGgtA17AY.1160.000287
ORF1ab/nsp6131V131VgtGgtT77B.1.1.2840.000752
ORF1ab/nsp6131V131VgtGgtT77B.1.1470.005291
ORF1ab/nsp6131V131VgtGgtC47B.1.360.000584
ORF1ab/nsp6131V131VgtGgtT27B.1.360.000292
ORF1ab/nsp6131V131VgtGgtA17B.1.360.000146
ORF1ab/nsp6131V131VgtGgtA66AY.1070.002796
ORF1ab/nsp6131V131VgtGgtT66AY.1170.000507
ORF1ab/nsp6131V131VgtGgtT56AY.260.000142
ORF1ab/nsp6131V131VgtGgtC16AY.260.000028
ORF1ab/nsp6131V131VgtGgtT66AY.320.003195
ORF1ab/nsp6131V131VgtGgtT66AY.4.40.002455
ORF1ab/nsp6131V131VgtGgtT66AY.46.60.000433
ORF1ab/nsp6131V131VgtGgtT66AY.470.000187
ORF1ab/nsp6131V131VgtGgtT66AY.98.10.000291
ORF1ab/nsp6131V131VgtGgtT66Q.80.000989
ORF1ab/nsp6131V131VgtGgtT55AY.1080.005513
ORF1ab/nsp6131V131VgtGgtT45AY.230.000279
ORF1ab/nsp6131V131VgtGgtC15AY.230.00007
ORF1ab/nsp6131V131VgtGgtT35AY.290.000047
ORF1ab/nsp6131V131VgtGgtA25AY.290.000032
ORF1ab/nsp6131V131VgtGgtT55B.1.1.1890.007564
ORF1ab/nsp6131V131VgtGgtT45P.20.000747
ORF1ab/nsp6131V131VgtGgtA15P.20.000187
ORF1ab/nsp6131V131VgtGgtT44AY.140.000352
ORF1ab/nsp6131V131VgtGgtT44AY.46.20.002541
ORF1ab/nsp6131V131VgtGgtT44AY.580.00363
ORF1ab/nsp6131V131VgtGgtT44AY.920.001149
ORF1ab/nsp6131V131VgtGgtT44B.1.1.1980.005874
ORF1ab/nsp6131V131VgtGgtT44B.1.1.2630.006231
ORF1ab/nsp6131V131VgtGgtA44B.1.1190.042105
ORF1ab/nsp6131V131VgtGgtT44B.1.177.540.002426
ORF1ab/nsp6131V131VgtGgtT44B.1.214.20.002398
ORF1ab/nsp6131V131VgtGgtT44B.1.2400.000862
ORF1ab/nsp6131V131VgtGgtT44B.1.258.140.003922
ORF1ab/nsp6131V131VgtGgtT44B.1.5440.024096
ORF1ab/nsp6131V131VgtGgtT44L.20.045455
ORF1ab/nsp6131V131VgtGgtT44N.50.007067
ORF1ab/nsp6131V131VgtGgtT44Q.40.001819
ORF1ab/nsp6131V131VgtGgtT33AY.120.000948
ORF1ab/nsp6131V131VgtGgtT33AY.20.001068
ORF1ab/nsp6131V131VgtGgtT33AY.270.000194
ORF1ab/nsp6131V131VgtGgtT33AY.340.000291
ORF1ab/nsp6131V131VgtGgtT33AY.400.002893
ORF1ab/nsp6131V131VgtGgtT33AY.5.20.007389
ORF1ab/nsp6131V131VgtGgtT33AY.5.30.001012
ORF1ab/nsp6131V131VgtGgtT23AY.5.40.000553
ORF1ab/nsp6131V131VgtGgtA13AY.5.40.000277
ORF1ab/nsp6131V131VgtGgtT33AY.560.004815
ORF1ab/nsp6131V131VgtGgtT33AY.570.001969
ORF1ab/nsp6131V131VgtGgtT33B0.000383
ORF1ab/nsp6131V131VgtGgtT33B.1.1.630.001157
ORF1ab/nsp6131V131VgtGgtT33B.1.177.330.004934
ORF1ab/nsp6131V131VgtGgtT33B.1.177.810.000568
ORF1ab/nsp6131V131VgtGgtA33B.1.3880.272727
ORF1ab/nsp6131V131VgtGgtT33B.1.4200.03125
ORF1ab/nsp6131V131VgtGgtT33B.1.5500.041096
ORF1ab/nsp6131V131VgtGgtT33B.1.6210.000266
ORF1ab/nsp6131V131VgtGgtT33B.1.6250.007059
ORF1ab/nsp6131V131VgtGgtT33C.370.000348
ORF1ab/nsp6131V131VgtGgtT33Q.10.000379
ORF1ab/nsp6131V131VgtGgtT22AY.1010.000981
ORF1ab/nsp6131V131VgtGgtT22AY.1140.000462
ORF1ab/nsp6131V131VgtGgtT22AY.120.10.000642
ORF1ab/nsp6131V131VgtGgtT22AY.190.002281
ORF1ab/nsp6131V131VgtGgtT22AY.380.000999
ORF1ab/nsp6131V131VgtGgtT12AY.4.50.000107
ORF1ab/nsp6131V131VgtGgtC12AY.4.50.000107
ORF1ab/nsp6131V131VgtGgtT22AY.490.00639
ORF1ab/nsp6131V131VgtGgtT12AY.550.000917
ORF1ab/nsp6131V131VgtGgtA12AY.550.000917
ORF1ab/nsp6131V131VgtGgtT22AY.690.000373
ORF1ab/nsp6131V131VgtGgtT22AY.860.00166
ORF1ab/nsp6131V131VgtGgtT22AY.990.002099
ORF1ab/nsp6131V131VgtGgtT22AY.99.10.003106
ORF1ab/nsp6131V131VgtGgtT22AY.99.20.000184
ORF1ab/nsp6131V131VgtGgtA22B.1.1.10.000653
ORF1ab/nsp6131V131VgtGgtT22B.1.1.1610.007067
ORF1ab/nsp6131V131VgtGgtT22B.1.1.1760.000879
ORF1ab/nsp6131V131VgtGgtT22B.1.1.2140.000111
ORF1ab/nsp6131V131VgtGgtT22B.1.1.2160.001781
ORF1ab/nsp6131V131VgtGgtT12B.1.1.2220.000204
ORF1ab/nsp6131V131VgtGgtA12B.1.1.2220.000204
ORF1ab/nsp6131V131VgtGgtT22B.1.1.2310.006192
ORF1ab/nsp6131V131VgtGgtA12B.1.1.280.000311
ORF1ab/nsp6131V131VgtGgtT12B.1.1.280.000311
ORF1ab/nsp6131V131VgtGgtT22B.1.1.3060.000877
ORF1ab/nsp6131V131VgtGgtT22B.1.177.750.002081
ORF1ab/nsp6131V131VgtGgtT22B.1.2340.000264
ORF1ab/nsp6131V131VgtGgtT22B.1.438.10.000215
ORF1ab/nsp6131V131VgtGgtT22B.1.4530.006472
ORF1ab/nsp6131V131VgtGgtT22B.1.466.20.000782
ORF1ab/nsp6131V131VgtGgtT22B.1.4700.002809
ORF1ab/nsp6131V131VgtGgtT22B.1.5240.002813
ORF1ab/nsp6131V131VgtGgtT22B.1.5610.000794
ORF1ab/nsp6131V131VgtGgtT22B.1.617.30.00597
ORF1ab/nsp6131V131VgtGgtT22D.20.00015
ORF1ab/nsp6131V131VgtGgtT22P.1.140.000096
ORF1ab/nsp6131V131VgtGgtT11A.10.000282
ORF1ab/nsp6131V131VgtGgtT11AE.10.011364
ORF1ab/nsp6131V131VgtGgtT11AY.1040.001984
ORF1ab/nsp6131V131VgtGgtT11AY.1090.00074
ORF1ab/nsp6131V131VgtGgtT11AY.1100.000113
ORF1ab/nsp6131V131VgtGgtT11AY.130.000161
ORF1ab/nsp6131V131VgtGgtT11AY.280.00189
ORF1ab/nsp6131V131VgtGgtT11AY.3.10.000085
ORF1ab/nsp6131V131VgtGgtT11AY.34.10.00051
ORF1ab/nsp6131V131VgtGgtT11AY.370.000316
ORF1ab/nsp6131V131VgtGgtT11AY.39.20.001541
ORF1ab/nsp6131V131VgtGgtT11AY.46.50.000198
ORF1ab/nsp6131V131VgtGgtT11AY.510.000909
ORF1ab/nsp6131V131VgtGgtT11AY.540.000095
ORF1ab/nsp6131V131VgtGgtT11AY.590.00053
ORF1ab/nsp6131V131VgtGgtT11AY.650.000533
ORF1ab/nsp6131V131VgtGgtT11AY.680.000274
ORF1ab/nsp6131V131VgtGgtT11AY.80.000606
ORF1ab/nsp6131V131VgtGgtT11AY.800.001129
ORF1ab/nsp6131V131VgtGgtA11AY.90.000068
ORF1ab/nsp6131V131VgtGgtT11AY.9.2.10.001976
ORF1ab/nsp6131V131VgtGgtT11AY.900.000684
ORF1ab/nsp6131V131VgtGgtT11AY.930.000273
ORF1ab/nsp6131V131VgtGgtT11AY.950.000761
ORF1ab/nsp6131V131VgtGgtT11AY.960.002075
ORF1ab/nsp6131V131VgtGgtT11B.1.1.100.001115
ORF1ab/nsp6131V131VgtGgtT11B.1.1.1010.01
ORF1ab/nsp6131V131VgtGgtT11B.1.1.1410.002012
ORF1ab/nsp6131V131VgtGgtT11B.1.1.1940.00495
ORF1ab/nsp6131V131VgtGgtA11B.1.1.2560.013699
ORF1ab/nsp6131V131VgtGgtT11B.1.1.2610.008621
ORF1ab/nsp6131V131VgtGgtT11B.1.1.2770.000759
ORF1ab/nsp6131V131VgtGgtT11B.1.1.2940.001266
ORF1ab/nsp6131V131VgtGgtT11B.1.1.330.000421
ORF1ab/nsp6131V131VgtGgtT11B.1.1.3510.002793
ORF1ab/nsp6131V131VgtGgtT11B.1.1.3720.000689
ORF1ab/nsp6131V131VgtGgtT11B.1.1.390.00051
ORF1ab/nsp6131V131VgtGgtT11B.1.1.4480.002033
ORF1ab/nsp6131V131VgtGgtT11B.1.1.4860.001577
ORF1ab/nsp6131V131VgtGgtT11B.1.1.500.000679
ORF1ab/nsp6131V131VgtGgtT11B.1.1.520.012195
ORF1ab/nsp6131V131VgtGgtT11B.1.1.830.00271
ORF1ab/nsp6131V131VgtGgtT11B.1.177.50.001242
ORF1ab/nsp6131V131VgtGgtT11B.1.177.560.000668
ORF1ab/nsp6131V131VgtGgtT11B.1.177.570.000281
ORF1ab/nsp6131V131VgtGgtT11B.1.177.70.000165
ORF1ab/nsp6131V131VgtGgtT11B.1.2210.000071
ORF1ab/nsp6131V131VgtGgtT11B.1.2220.001692
ORF1ab/nsp6131V131VgtGgtT11B.1.2790.000514
ORF1ab/nsp6131V131VgtGgtT11B.1.30.002618
ORF1ab/nsp6131V131VgtGgtA11B.1.351.20.000303
ORF1ab/nsp6131V131VgtGgtT11B.1.36.100.004785
ORF1ab/nsp6131V131VgtGgtC11B.1.36.160.001425
ORF1ab/nsp6131V131VgtGgtT11B.1.36.80.001
ORF1ab/nsp6131V131VgtGgtT11B.1.3620.001541
ORF1ab/nsp6131V131VgtGgtT11B.1.4710.002732
ORF1ab/nsp6131V131VgtGgtT11B.1.4970.000315
ORF1ab/nsp6131V131VgtGgtT11B.1.4980.020408
ORF1ab/nsp6131V131VgtGgtT11B.1.4990.00105
ORF1ab/nsp6131V131VgtGgtT11B.1.5170.000427
ORF1ab/nsp6131V131VgtGgtT11B.1.5770.000687
ORF1ab/nsp6131V131VgtGgtT11B.1.5950.000261
ORF1ab/nsp6131V131VgtGgtT11B.1.6090.000479
ORF1ab/nsp6131V131VgtGgtT11B.1.617.10.000129
ORF1ab/nsp6131V131VgtGgtT11B.1.6200.000946
ORF1ab/nsp6131V131VgtGgtT11B.1.6370.000073
ORF1ab/nsp6131V131VgtGgtT11B.1.6390.021739
ORF1ab/nsp6131V131VgtGgtT11B.6.60.000889
ORF1ab/nsp6131V131VgtGgtC11C.10.002392
ORF1ab/nsp6131V131VgtGgtT11P.40.003802
ORF1ab/nsp6131V131VgtGgtT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.