CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = T77A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp677T77AT3646AnonsynActGct242665624265630.99996211201-11203
ORF1ab/nsp677T77AT3646AnonsynAcTGcC2426656850.000035027611201-11203
ORF1ab/nsp677T77AT3646AnonsynAcTGcG242665660.0000024725411201-11203
ORF1ab/nsp677T77AT3646AnonsynAcTGcA242665620.00000082417911201-11203

Details of the mutation T77A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp677T77AActGct24265632426656All0.464109
ORF1ab/nsp677T77AAcTGcC852426656All0.000016
ORF1ab/nsp677T77AAcTGcG62426656All0.000001
ORF1ab/nsp677T77AAcTGcA22426656All0
ORF1ab/nsp677T77AActGct642128642139AY.40.999423
ORF1ab/nsp677T77AAcTGcC11642139AY.40.000017
ORF1ab/nsp677T77AActGct225442225457B.1.617.20.848883
ORF1ab/nsp677T77AAcTGcC13225457B.1.617.20.000049
ORF1ab/nsp677T77AAcTGcA1225457B.1.617.20.000004
ORF1ab/nsp677T77AAcTGcG1225457B.1.617.20.000004
ORF1ab/nsp677T77AActGct215628215631AY.430.955332
ORF1ab/nsp677T77AAcTGcC3215631AY.430.000013
ORF1ab/nsp677T77AActGct165739165746AY.250.99689
ORF1ab/nsp677T77AAcTGcC4165746AY.250.000024
ORF1ab/nsp677T77AAcTGcG2165746AY.250.000012
ORF1ab/nsp677T77AAcTGcA1165746AY.250.000006
ORF1ab/nsp677T77AActGct162350162352AY.440.988186
ORF1ab/nsp677T77AAcTGcC2162352AY.440.000012
ORF1ab/nsp677T77AActGct160247160252AY.1030.994983
ORF1ab/nsp677T77AAcTGcC4160252AY.1030.000025
ORF1ab/nsp677T77AAcTGcG1160252AY.1030.000006
ORF1ab/nsp677T77AActGct100241100259AY.30.997036
ORF1ab/nsp677T77AAcTGcC18100259AY.30.000179
ORF1ab/nsp677T77AActGct6335563356AY.290.999338
ORF1ab/nsp677T77AAcTGcC163356AY.290.000016
ORF1ab/nsp677T77AActGct4834748347AY.50.998327
ORF1ab/nsp677T77AActGct4606646067AY.4.20.999111
ORF1ab/nsp677T77AAcTGcG146067AY.4.20.000022
ORF1ab/nsp677T77AActGct3991339913AY.390.98631
ORF1ab/nsp677T77AActGct3765937659AY.1020.998489
ORF1ab/nsp677T77AActGct2823028232AY.1190.996752
ORF1ab/nsp677T77AAcTGcC228232AY.1190.000071
ORF1ab/nsp677T77AActGct2686126861AY.1200.998662
ORF1ab/nsp677T77AActGct2554325544AY.200.992732
ORF1ab/nsp677T77AAcTGcC125544AY.200.000039
ORF1ab/nsp677T77AActGct2517025170AY.39.10.997069
ORF1ab/nsp677T77AActGct2474724747AY.420.995575
ORF1ab/nsp677T77AActGct2425624257AY.60.997615
ORF1ab/nsp677T77AAcTGcC124257AY.60.000041
ORF1ab/nsp677T77AActGct2164321643AY.1000.995721
ORF1ab/nsp677T77AActGct2054920555AY.98.10.995205
ORF1ab/nsp677T77AAcTGcC620555AY.98.10.000291
ORF1ab/nsp677T77AActGct1566215662AY.1180.981205
ORF1ab/nsp677T77AActGct1480814808AY.330.988848
ORF1ab/nsp677T77AActGct1397213982AY.230.974541
ORF1ab/nsp677T77AAcTGcC1013982AY.230.000697
ORF1ab/nsp677T77AActGct1370513705AY.46.60.989602
ORF1ab/nsp677T77AActGct1242112421AY.980.981199
ORF1ab/nsp677T77AActGct1169911700AY.3.10.997442
ORF1ab/nsp677T77AAcTGcC111700AY.3.10.000085
ORF1ab/nsp677T77AActGct1164111641AY.1170.983857
ORF1ab/nsp677T77AActGct1079810798AY.99.20.995116
ORF1ab/nsp677T77AActGct1028410284AY.340.997188
ORF1ab/nsp677T77AActGct94449444AY.460.982931
ORF1ab/nsp677T77AActGct92749274AY.4.50.996883
ORF1ab/nsp677T77AActGct88578857AY.7.10.998197
ORF1ab/nsp677T77AActGct79657965AY.450.969214
ORF1ab/nsp677T77AActGct76017602B.1.617.10.980268
ORF1ab/nsp677T77AAcTGcG17602B.1.617.10.000129
ORF1ab/nsp677T77AActGct72977298AY.1210.987415
ORF1ab/nsp677T77AAcTGcC17298AY.1210.000135
ORF1ab/nsp677T77AActGct69056905AY.1130.983198
ORF1ab/nsp677T77AActGct67086710AY.360.99422
ORF1ab/nsp677T77AAcTGcC26710AY.360.000296
ORF1ab/nsp677T77AActGct66686668AY.4.2.10.993445
ORF1ab/nsp677T77AActGct60676068AY.46.40.998026
ORF1ab/nsp677T77AAcTGcC16068AY.46.40.000165
ORF1ab/nsp677T77AActGct54525452AY.1110.998535
ORF1ab/nsp677T77AActGct50935093AY.70.998236
ORF1ab/nsp677T77AActGct50395039AY.46.50.999802
ORF1ab/nsp677T77AActGct45354535AY.29.11
ORF1ab/nsp677T77AActGct42994299AY.1140.993529
ORF1ab/nsp677T77AActGct42344234AY.1100.477124
ORF1ab/nsp677T77AActGct35513551AY.5.40.982568
ORF1ab/nsp677T77AActGct33813382AY.1160.969601
ORF1ab/nsp677T77AAcTGcC13382AY.1160.000287
ORF1ab/nsp677T77AActGct33773377AY.410.992651
ORF1ab/nsp677T77AActGct33543354AY.920.963516
ORF1ab/nsp677T77AActGct32063206AY.116.10.998443
ORF1ab/nsp677T77AActGct31633163AY.930.863736
ORF1ab/nsp677T77AActGct31103110AY.120.10.998395
ORF1ab/nsp677T77AActGct30583058AY.120.966498
ORF1ab/nsp677T77AActGct29402940AY.1060.984595
ORF1ab/nsp677T77AActGct29092909AY.5.30.981444
ORF1ab/nsp677T77AActGct25012501AY.10.989711
ORF1ab/nsp677T77AActGct24412441AY.4.40.998773
ORF1ab/nsp677T77AActGct23942394AY.23.10.999165
ORF1ab/nsp677T77AActGct23552355AY.9.20.086498
ORF1ab/nsp677T77AActGct23172317AY.850.989748
ORF1ab/nsp677T77AActGct22542254AY.940.997787
ORF1ab/nsp677T77AActGct22512251AY.840.984689
ORF1ab/nsp677T77AActGct21352135AY.1070.994874
ORF1ab/nsp677T77AActGct20232023AY.1010.992153
ORF1ab/nsp677T77AActGct20062006AY.120.2.10.999502
ORF1ab/nsp677T77AActGct19611961AY.34.11
ORF1ab/nsp677T77AActGct18231823AY.320.970714
ORF1ab/nsp677T77AActGct17791779AY.7.20.994966
ORF1ab/nsp677T77AActGct15061506AY.46.20.956798
ORF1ab/nsp677T77AActGct14651465AY.1050.942122
ORF1ab/nsp677T77AActGct14481448AY.900.991102
ORF1ab/nsp677T77AActGct13801380AY.39.1.11
ORF1ab/nsp677T77AActGct13561356AY.4.11
ORF1ab/nsp677T77AActGct13441346AY.910.981738
ORF1ab/nsp677T77AAcTGcC21346AY.910.001461
ORF1ab/nsp677T77AActGct13421342AY.1090.992604
ORF1ab/nsp677T77AActGct12751275AY.950.97032
ORF1ab/nsp677T77AActGct11811181AY.4.30.994108
ORF1ab/nsp677T77AActGct11751175AY.870.978351
ORF1ab/nsp677T77AActGct11641164AY.860.965975
ORF1ab/nsp677T77AActGct11061106B.10.01013
ORF1ab/nsp677T77AActGct11001100AY.880.972591
ORF1ab/nsp677T77AActGct10671067AY.46.30.996265
ORF1ab/nsp677T77AActGct959959AY.46.10.9846
ORF1ab/nsp677T77AActGct945945AY.470.029394
ORF1ab/nsp677T77AActGct930930AY.990.975866
ORF1ab/nsp677T77AActGct884884AY.800.997743
ORF1ab/nsp677T77AActGct865865AY.750.048459
ORF1ab/nsp677T77AActGct839839AY.770.945885
ORF1ab/nsp677T77AActGct819819AY.790.991525
ORF1ab/nsp677T77AActGct769769AY.1080.84785
ORF1ab/nsp677T77AActGct728728AY.820.987788
ORF1ab/nsp677T77AActGct717717AY.120.20.921594
ORF1ab/nsp677T77AActGct648648AY.39.20.998459
ORF1ab/nsp677T77AActGct638638AY.99.10.990683
ORF1ab/nsp677T77AActGct615615AY.730.409182
ORF1ab/nsp677T77AActGct611611AY.780.941448
ORF1ab/nsp677T77AActGct583583AY.970.991497
ORF1ab/nsp677T77AActGct576576AY.830.993103
ORF1ab/nsp677T77AActGct498498AY.1040.988095
ORF1ab/nsp677T77AActGct488488AY.810.972112
ORF1ab/nsp677T77AActGct475475AY.680.13003
ORF1ab/nsp677T77AActGct471471AY.220.985356
ORF1ab/nsp677T77AActGct470470AY.210.891841
ORF1ab/nsp677T77AActGct467467B0.059688
ORF1ab/nsp677T77AActGct464464AY.960.962656
ORF1ab/nsp677T77AActGct448448AY.550.411009
ORF1ab/nsp677T77AActGct405405AY.5.20.997537
ORF1ab/nsp677T77AActGct379379AY.740.04383
ORF1ab/nsp677T77AActGct324324AY.540.030892
ORF1ab/nsp677T77AActGct301301B.1.1.70.000269
ORF1ab/nsp677T77AActGct296296AY.590.15678
ORF1ab/nsp677T77AActGct286286AY.580.259528
ORF1ab/nsp677T77AActGct283283AY.190.322691
ORF1ab/nsp677T77AActGct265265AY.5.10.996241
ORF1ab/nsp677T77AActGct247247AY.260.006993
ORF1ab/nsp677T77AActGct246246AY.91.11
ORF1ab/nsp677T77AActGct233233AY.75.10.042012
ORF1ab/nsp677T77AActGct211212AY.530.060667
ORF1ab/nsp677T77AAcTGcC1212AY.530.000288
ORF1ab/nsp677T77AActGct204204AY.760.985507
ORF1ab/nsp677T77AActGct202202AY.520.164495
ORF1ab/nsp677T77AActGct201201AY.890.985294
ORF1ab/nsp677T77AActGct191191AY.1150.994792
ORF1ab/nsp677T77AActGct191191AY.620.083224
ORF1ab/nsp677T77AActGct183183B.1.177.70.030168
ORF1ab/nsp677T77AActGct182182AY.690.033974
ORF1ab/nsp677T77AActGct167167AY.640.099405
ORF1ab/nsp677T77AActGct160160AY.100.084791
ORF1ab/nsp677T77AActGct155155AY.670.071959
ORF1ab/nsp677T77AActGct150150AY.560.24077
ORF1ab/nsp677T77AActGct148148AY.370.046776
ORF1ab/nsp677T77AActGct141141AY.160.053531
ORF1ab/nsp677T77AActGct129129AY.630.049903
ORF1ab/nsp677T77AActGct114114C.380.919355
ORF1ab/nsp677T77AActGct109109AY.570.071522
ORF1ab/nsp677T77AActGct101101AY.350.023538
ORF1ab/nsp677T77AActGct9898AY.140.008625
ORF1ab/nsp677T77AActGct9898AY.400.094503
ORF1ab/nsp677T77AActGct9494AY.130.015132
ORF1ab/nsp677T77AActGct9393AY.480.043256
ORF1ab/nsp677T77AActGct8484AY.700.017515
ORF1ab/nsp677T77AActGct7979AY.650.042111
ORF1ab/nsp677T77AActGct7070AY.380.034948
ORF1ab/nsp677T77AActGct6969B.1.243.21
ORF1ab/nsp677T77AActGct6262AY.710.029454
ORF1ab/nsp677T77AActGct6161AY.600.057223
ORF1ab/nsp677T77AActGct5555B.1.10.000998
ORF1ab/nsp677T77AActGct5454AY.110.072289
ORF1ab/nsp677T77AActGct4141B.1.2140.150183
ORF1ab/nsp677T77AActGct3939AY.500.031175
ORF1ab/nsp677T77AActGct3838AY.490.121406
ORF1ab/nsp677T77AActGct3333AY.16.10.015508
ORF1ab/nsp677T77AActGct3232AY.610.003353
ORF1ab/nsp677T77AActGct3030AY.170.245902
ORF1ab/nsp677T77AActGct2929AY.300.011476
ORF1ab/nsp677T77AActGct2727AY.240.011638
ORF1ab/nsp677T77AActGct2525B.1.20.00022
ORF1ab/nsp677T77AActGct2323AY.510.020909
ORF1ab/nsp677T77AActGct2121AY.280.039698
ORF1ab/nsp677T77AActGct1919AY.90.001284
ORF1ab/nsp677T77AActGct1515AY.9.10.001256
ORF1ab/nsp677T77AActGct1515B.1.5760.013599
ORF1ab/nsp677T77AActGct1414AY.660.014973
ORF1ab/nsp677T77AActGct1414AY.80.008485
ORF1ab/nsp677T77AActGct1414B.1.1600.000437
ORF1ab/nsp677T77AActGct1212B.1.1.2940.01519
ORF1ab/nsp677T77AActGct1212B.1.6210.001062
ORF1ab/nsp677T77AActGct1212P.10.000189
ORF1ab/nsp677T77AActGct1111AY.720.014966
ORF1ab/nsp677T77AActGct1111AZ.20.009031
ORF1ab/nsp677T77AActGct1111B.1.1.5260.039007
ORF1ab/nsp677T77AActGct1111B.1.177.730.006229
ORF1ab/nsp677T77AActGct99A0.003483
ORF1ab/nsp677T77AActGct99B.1.1570.026866
ORF1ab/nsp677T77AActGct99B.1.6280.003171
ORF1ab/nsp677T77AActGct88B.1.3510.000238
ORF1ab/nsp677T77AActGct88B.1.6230.004292
ORF1ab/nsp677T77AActGct77AY.270.000453
ORF1ab/nsp677T77AActGct66A.2.50.002994
ORF1ab/nsp677T77AActGct66B.1.2210.000426
ORF1ab/nsp677T77AActGct66B.1.3150.036364
ORF1ab/nsp677T77AActGct66B.1.3490.004289
ORF1ab/nsp677T77AActGct66P.1.10.001906
ORF1ab/nsp677T77AActGct55AY.20.001781
ORF1ab/nsp677T77AActGct55B.1.1390.003666
ORF1ab/nsp677T77AActGct55B.1.3750.004098
ORF1ab/nsp677T77AActGct55B.1.5250.000566
ORF1ab/nsp677T77AActGct55B.1.6090.002397
ORF1ab/nsp677T77AActGct44B.1.1.5230.00625
ORF1ab/nsp677T77AActGct44B.1.1770.000053
ORF1ab/nsp677T77AActGct44B.1.2400.000862
ORF1ab/nsp677T77AActGct44B.1.2430.000278
ORF1ab/nsp677T77AActGct44B.1.3350.041237
ORF1ab/nsp677T77AActGct44B.1.351.30.003506
ORF1ab/nsp677T77AActGct44B.1.4740.007605
ORF1ab/nsp677T77AActGct44B.1.4850.059701
ORF1ab/nsp677T77AActGct44B.400.001457
ORF1ab/nsp677T77AActGct44Q.10.000505
ORF1ab/nsp677T77AActGct33B.1.3690.000856
ORF1ab/nsp677T77AActGct33B.1.4290.000071
ORF1ab/nsp677T77AActGct33B.1.6000.017544
ORF1ab/nsp677T77AActGct33C.260.022059
ORF1ab/nsp677T77AActGct33C.36.3.10.008152
ORF1ab/nsp677T77AActGct33C.370.000348
ORF1ab/nsp677T77AActGct220.111111
ORF1ab/nsp677T77AActGct22AU.20.004843
ORF1ab/nsp677T77AActGct22AU.30.004219
ORF1ab/nsp677T77AActGct22AY.150.004444
ORF1ab/nsp677T77AActGct22AY.180.020202
ORF1ab/nsp677T77AActGct22B.1.1.280.000622
ORF1ab/nsp677T77AActGct22B.1.1.3060.000877
ORF1ab/nsp677T77AActGct22B.1.1.3260.003521
ORF1ab/nsp677T77AActGct22B.1.1.3720.001377
ORF1ab/nsp677T77AActGct22B.1.1430.042553
ORF1ab/nsp677T77AActGct22B.1.1580.047619
ORF1ab/nsp677T77AActGct22B.1.2600.006689
ORF1ab/nsp677T77AActGct22B.1.3250.013793
ORF1ab/nsp677T77AActGct22B.1.351.20.000605
ORF1ab/nsp677T77AActGct22B.1.351.50.001199
ORF1ab/nsp677T77AActGct22B.1.4270.000101
ORF1ab/nsp677T77AActGct22B.1.4330.00639
ORF1ab/nsp677T77AActGct22B.1.466.20.000782
ORF1ab/nsp677T77AActGct22B.1.4710.005464
ORF1ab/nsp677T77AActGct22B.1.5950.000522
ORF1ab/nsp677T77AActGct22B.1.6040.034483
ORF1ab/nsp677T77AActGct22B.1.6290.026667
ORF1ab/nsp677T77AActGct22B.550.0059
ORF1ab/nsp677T77AActGct22C.36.30.001134
ORF1ab/nsp677T77AActGct22P.1.100.000539
ORF1ab/nsp677T77AActGct22P.1.120.000968
ORF1ab/nsp677T77AActGct22Q.80.00033
ORF1ab/nsp677T77AActGct11A.10.000282
ORF1ab/nsp677T77AActGct11A.20.000662
ORF1ab/nsp677T77AActGct11A.2.5.20.001572
ORF1ab/nsp677T77AActGct11AY.310.018519
ORF1ab/nsp677T77AActGct11B.1.1.1480.008772
ORF1ab/nsp677T77AActGct11B.1.1.2100.005714
ORF1ab/nsp677T77AActGct11B.1.1.2690.001353
ORF1ab/nsp677T77AActGct11B.1.1.3010.001179
ORF1ab/nsp677T77AActGct11B.1.1.3120.001912
ORF1ab/nsp677T77AActGct11B.1.1.3170.000412
ORF1ab/nsp677T77AActGct11B.1.1.3420.0625
ORF1ab/nsp677T77AActGct11B.1.1.3490.010309
ORF1ab/nsp677T77AActGct11B.1.1.390.00051
ORF1ab/nsp677T77AActGct11B.1.1.4090.002833
ORF1ab/nsp677T77AActGct11B.1.1.4320.001266
ORF1ab/nsp677T77AActGct11B.1.1.4480.002033
ORF1ab/nsp677T77AActGct11B.1.1.5120.028571
ORF1ab/nsp677T77AActGct11B.1.110.30.000718
ORF1ab/nsp677T77AActGct11B.1.1310.008772
ORF1ab/nsp677T77AActGct11B.1.1420.002899
ORF1ab/nsp677T77AActGct11B.1.1700.00431
ORF1ab/nsp677T77AActGct11B.1.177.570.000281
ORF1ab/nsp677T77AActGct11B.1.177.630.002703
ORF1ab/nsp677T77AActGct11B.1.1790.003759
ORF1ab/nsp677T77AActGct11B.1.2080.04
ORF1ab/nsp677T77AActGct11B.1.2180.005155
ORF1ab/nsp677T77AActGct11B.1.2390.001221
ORF1ab/nsp677T77AActGct11B.1.2470.014925
ORF1ab/nsp677T77AActGct11B.1.3050.002151
ORF1ab/nsp677T77AActGct11B.1.3110.000275
ORF1ab/nsp677T77AActGct11B.1.3400.004292
ORF1ab/nsp677T77AActGct11B.1.36.290.000517
ORF1ab/nsp677T77AActGct11B.1.3620.001541
ORF1ab/nsp677T77AActGct11B.1.3660.004878
ORF1ab/nsp677T77AActGct11B.1.3780.006849
ORF1ab/nsp677T77AActGct11B.1.3800.006623
ORF1ab/nsp677T77AActGct11B.1.390.003906
ORF1ab/nsp677T77AActGct11B.1.3970.004854
ORF1ab/nsp677T77AActGct11B.1.4000.000429
ORF1ab/nsp677T77AActGct11B.1.400.10.015152
ORF1ab/nsp677T77AActGct11B.1.4320.011236
ORF1ab/nsp677T77AActGct11B.1.4360.001029
ORF1ab/nsp677T77AActGct11B.1.4560.003268
ORF1ab/nsp677T77AActGct11B.1.4590.004082
ORF1ab/nsp677T77AActGct11B.1.4620.007246
ORF1ab/nsp677T77AActGct11B.1.5260.000024
ORF1ab/nsp677T77AActGct11B.1.5300.007143
ORF1ab/nsp677T77AActGct11B.1.5370.02
ORF1ab/nsp677T77AActGct11B.1.5460.003704
ORF1ab/nsp677T77AActGct11B.1.5510.00129
ORF1ab/nsp677T77AActGct11B.1.5600.00463
ORF1ab/nsp677T77AActGct11B.1.5710.009709
ORF1ab/nsp677T77AActGct11B.1.5770.000687
ORF1ab/nsp677T77AActGct11B.1.5810.009434
ORF1ab/nsp677T77AActGct11B.1.5960.000087
ORF1ab/nsp677T77AActGct11B.1.5990.00365
ORF1ab/nsp677T77AActGct11B.1.6190.000871
ORF1ab/nsp677T77AActGct11B.1.6270.00202
ORF1ab/nsp677T77AActGct11B.1.6320.006711
ORF1ab/nsp677T77AActGct11B.1.700.02439
ORF1ab/nsp677T77AActGct11B.1.810.021277
ORF1ab/nsp677T77AActGct11N.40.004255
ORF1ab/nsp677T77AActGct11P.1.130.000898
ORF1ab/nsp677T77AActGct11P.1.170.000162
ORF1ab/nsp677T77AActGct11P.1.40.000977
ORF1ab/nsp677T77AActGct11P.1.70.000319
ORF1ab/nsp677T77AActGct11P.70.004367
ORF1ab/nsp677T77AActGct11Q.30.000145
ORF1ab/nsp677T77AActGct11Q.40.000455