CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 77 | T77A | T3646A | nonsyn | Act | Gct | 2426656 | 2426563 | 0.999962 | 11201-11203 |
ORF1ab/nsp6 | 77 | T77A | T3646A | nonsyn | AcT | GcC | 2426656 | 85 | 0.0000350276 | 11201-11203 |
ORF1ab/nsp6 | 77 | T77A | T3646A | nonsyn | AcT | GcG | 2426656 | 6 | 0.00000247254 | 11201-11203 |
ORF1ab/nsp6 | 77 | T77A | T3646A | nonsyn | AcT | GcA | 2426656 | 2 | 0.000000824179 | 11201-11203 |
Details of the mutation T77A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2426563 | 2426656 | All | 0.464109 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 85 | 2426656 | All | 0.000016 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcG | 6 | 2426656 | All | 0.000001 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcA | 2 | 2426656 | All | 0 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 642128 | 642139 | AY.4 | 0.999423 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 11 | 642139 | AY.4 | 0.000017 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 225442 | 225457 | B.1.617.2 | 0.848883 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 13 | 225457 | B.1.617.2 | 0.000049 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcA | 1 | 225457 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcG | 1 | 225457 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 215628 | 215631 | AY.43 | 0.955332 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 3 | 215631 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 165739 | 165746 | AY.25 | 0.99689 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 4 | 165746 | AY.25 | 0.000024 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcG | 2 | 165746 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcA | 1 | 165746 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 162350 | 162352 | AY.44 | 0.988186 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 2 | 162352 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 160247 | 160252 | AY.103 | 0.994983 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 4 | 160252 | AY.103 | 0.000025 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcG | 1 | 160252 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 100241 | 100259 | AY.3 | 0.997036 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 18 | 100259 | AY.3 | 0.000179 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 63355 | 63356 | AY.29 | 0.999338 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 63356 | AY.29 | 0.000016 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 48347 | 48347 | AY.5 | 0.998327 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 46066 | 46067 | AY.4.2 | 0.999111 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcG | 1 | 46067 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 39913 | 39913 | AY.39 | 0.98631 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 37659 | 37659 | AY.102 | 0.998489 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 28230 | 28232 | AY.119 | 0.996752 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 2 | 28232 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 26861 | 26861 | AY.120 | 0.998662 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 25543 | 25544 | AY.20 | 0.992732 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 25544 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 25170 | 25170 | AY.39.1 | 0.997069 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 24747 | 24747 | AY.42 | 0.995575 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 24256 | 24257 | AY.6 | 0.997615 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 24257 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 21643 | 21643 | AY.100 | 0.995721 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 20549 | 20555 | AY.98.1 | 0.995205 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 6 | 20555 | AY.98.1 | 0.000291 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 15662 | 15662 | AY.118 | 0.981205 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 14808 | 14808 | AY.33 | 0.988848 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 13972 | 13982 | AY.23 | 0.974541 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 10 | 13982 | AY.23 | 0.000697 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 13705 | 13705 | AY.46.6 | 0.989602 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 12421 | 12421 | AY.98 | 0.981199 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 11699 | 11700 | AY.3.1 | 0.997442 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 11700 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 11641 | 11641 | AY.117 | 0.983857 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 10798 | 10798 | AY.99.2 | 0.995116 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 10284 | 10284 | AY.34 | 0.997188 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 9444 | 9444 | AY.46 | 0.982931 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 9274 | 9274 | AY.4.5 | 0.996883 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 8857 | 8857 | AY.7.1 | 0.998197 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 7965 | 7965 | AY.45 | 0.969214 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 7601 | 7602 | B.1.617.1 | 0.980268 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcG | 1 | 7602 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 7297 | 7298 | AY.121 | 0.987415 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 7298 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6905 | 6905 | AY.113 | 0.983198 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6708 | 6710 | AY.36 | 0.99422 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 2 | 6710 | AY.36 | 0.000296 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6668 | 6668 | AY.4.2.1 | 0.993445 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6067 | 6068 | AY.46.4 | 0.998026 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 6068 | AY.46.4 | 0.000165 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5452 | 5452 | AY.111 | 0.998535 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5093 | 5093 | AY.7 | 0.998236 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5039 | 5039 | AY.46.5 | 0.999802 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4535 | 4535 | AY.29.1 | 1 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4299 | 4299 | AY.114 | 0.993529 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4234 | 4234 | AY.110 | 0.477124 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3551 | 3551 | AY.5.4 | 0.982568 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3381 | 3382 | AY.116 | 0.969601 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 3382 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3377 | 3377 | AY.41 | 0.992651 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3354 | 3354 | AY.92 | 0.963516 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3206 | 3206 | AY.116.1 | 0.998443 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3163 | 3163 | AY.93 | 0.863736 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3110 | 3110 | AY.120.1 | 0.998395 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3058 | 3058 | AY.12 | 0.966498 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2940 | 2940 | AY.106 | 0.984595 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2909 | 2909 | AY.5.3 | 0.981444 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2501 | 2501 | AY.1 | 0.989711 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2441 | 2441 | AY.4.4 | 0.998773 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2394 | 2394 | AY.23.1 | 0.999165 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2355 | 2355 | AY.9.2 | 0.086498 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2317 | 2317 | AY.85 | 0.989748 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2254 | 2254 | AY.94 | 0.997787 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2251 | 2251 | AY.84 | 0.984689 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2135 | 2135 | AY.107 | 0.994874 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2023 | 2023 | AY.101 | 0.992153 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2006 | 2006 | AY.120.2.1 | 0.999502 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1961 | 1961 | AY.34.1 | 1 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1823 | 1823 | AY.32 | 0.970714 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1779 | 1779 | AY.7.2 | 0.994966 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1506 | 1506 | AY.46.2 | 0.956798 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1465 | 1465 | AY.105 | 0.942122 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1448 | 1448 | AY.90 | 0.991102 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1380 | 1380 | AY.39.1.1 | 1 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1356 | 1356 | AY.4.1 | 1 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1344 | 1346 | AY.91 | 0.981738 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 2 | 1346 | AY.91 | 0.001461 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1342 | 1342 | AY.109 | 0.992604 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1275 | 1275 | AY.95 | 0.97032 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1181 | 1181 | AY.4.3 | 0.994108 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1175 | 1175 | AY.87 | 0.978351 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1164 | 1164 | AY.86 | 0.965975 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1106 | 1106 | B.1 | 0.01013 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1100 | 1100 | AY.88 | 0.972591 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1067 | 1067 | AY.46.3 | 0.996265 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 959 | 959 | AY.46.1 | 0.9846 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 945 | 945 | AY.47 | 0.029394 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 930 | 930 | AY.99 | 0.975866 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 884 | 884 | AY.80 | 0.997743 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 865 | 865 | AY.75 | 0.048459 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 839 | 839 | AY.77 | 0.945885 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 819 | 819 | AY.79 | 0.991525 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 769 | 769 | AY.108 | 0.84785 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 728 | 728 | AY.82 | 0.987788 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 717 | 717 | AY.120.2 | 0.921594 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 648 | 648 | AY.39.2 | 0.998459 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 638 | 638 | AY.99.1 | 0.990683 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 615 | 615 | AY.73 | 0.409182 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 611 | 611 | AY.78 | 0.941448 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 583 | 583 | AY.97 | 0.991497 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 576 | 576 | AY.83 | 0.993103 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 498 | 498 | AY.104 | 0.988095 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 488 | 488 | AY.81 | 0.972112 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 475 | 475 | AY.68 | 0.13003 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 471 | 471 | AY.22 | 0.985356 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 470 | 470 | AY.21 | 0.891841 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 467 | 467 | B | 0.059688 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 464 | 464 | AY.96 | 0.962656 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 448 | 448 | AY.55 | 0.411009 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 405 | 405 | AY.5.2 | 0.997537 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 379 | 379 | AY.74 | 0.04383 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 324 | 324 | AY.54 | 0.030892 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 301 | 301 | B.1.1.7 | 0.000269 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 296 | 296 | AY.59 | 0.15678 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 286 | 286 | AY.58 | 0.259528 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 283 | 283 | AY.19 | 0.322691 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 265 | 265 | AY.5.1 | 0.996241 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 247 | 247 | AY.26 | 0.006993 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 246 | 246 | AY.91.1 | 1 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 233 | 233 | AY.75.1 | 0.042012 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 211 | 212 | AY.53 | 0.060667 |
ORF1ab/nsp6 | 77 | T77A | AcT | GcC | 1 | 212 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 204 | 204 | AY.76 | 0.985507 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 202 | 202 | AY.52 | 0.164495 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 201 | 201 | AY.89 | 0.985294 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 191 | 191 | AY.115 | 0.994792 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 191 | 191 | AY.62 | 0.083224 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 183 | 183 | B.1.177.7 | 0.030168 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 182 | 182 | AY.69 | 0.033974 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 167 | 167 | AY.64 | 0.099405 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 160 | 160 | AY.10 | 0.084791 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 155 | 155 | AY.67 | 0.071959 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 150 | 150 | AY.56 | 0.24077 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 148 | 148 | AY.37 | 0.046776 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 141 | 141 | AY.16 | 0.053531 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 129 | 129 | AY.63 | 0.049903 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 114 | 114 | C.38 | 0.919355 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 109 | 109 | AY.57 | 0.071522 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 101 | 101 | AY.35 | 0.023538 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 98 | 98 | AY.14 | 0.008625 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 98 | 98 | AY.40 | 0.094503 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 94 | 94 | AY.13 | 0.015132 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 93 | 93 | AY.48 | 0.043256 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 84 | 84 | AY.70 | 0.017515 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 79 | 79 | AY.65 | 0.042111 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 70 | 70 | AY.38 | 0.034948 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 69 | 69 | B.1.243.2 | 1 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 62 | 62 | AY.71 | 0.029454 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 61 | 61 | AY.60 | 0.057223 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 55 | 55 | B.1.1 | 0.000998 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 54 | 54 | AY.11 | 0.072289 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 41 | 41 | B.1.214 | 0.150183 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 39 | 39 | AY.50 | 0.031175 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 38 | 38 | AY.49 | 0.121406 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 33 | 33 | AY.16.1 | 0.015508 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 32 | 32 | AY.61 | 0.003353 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 30 | 30 | AY.17 | 0.245902 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 29 | 29 | AY.30 | 0.011476 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 27 | 27 | AY.24 | 0.011638 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 23 | 23 | AY.51 | 0.020909 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 21 | 21 | AY.28 | 0.039698 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 19 | 19 | AY.9 | 0.001284 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 15 | 15 | AY.9.1 | 0.001256 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 15 | 15 | B.1.576 | 0.013599 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 14 | 14 | AY.8 | 0.008485 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 12 | 12 | B.1.1.294 | 0.01519 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 11 | 11 | AY.72 | 0.014966 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 11 | 11 | AZ.2 | 0.009031 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 11 | 11 | B.1.1.526 | 0.039007 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 11 | 11 | B.1.177.73 | 0.006229 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 9 | 9 | A | 0.003483 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 9 | 9 | B.1.157 | 0.026866 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 9 | 9 | B.1.628 | 0.003171 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6 | 6 | B.1.315 | 0.036364 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6 | 6 | B.1.349 | 0.004289 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 6 | 6 | P.1.1 | 0.001906 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5 | 5 | B.1.139 | 0.003666 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5 | 5 | B.1.375 | 0.004098 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.335 | 0.041237 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.351.3 | 0.003506 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.474 | 0.007605 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.1.485 | 0.059701 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3 | 3 | B.1.600 | 0.017544 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3 | 3 | C.26 | 0.022059 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3 | 3 | C.36.3.1 | 0.008152 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | AY.18 | 0.020202 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.158 | 0.047619 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.325 | 0.013793 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp6 | 77 | T77A | Act | Gct | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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