CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = T222T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6222T222TT3791TsynacTacC3132770.88498411636-11638
ORF1ab/nsp6222T222TT3791TsynacTacG313310.099041511636-11638
ORF1ab/nsp6222T222TT3791TsynacTacA31350.015974411636-11638

Details of the mutation T222T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6222T222TacTacC277313All0.000053
ORF1ab/nsp6222T222TacTacG31313All0.000006
ORF1ab/nsp6222T222TacTacA5313All0.000001
ORF1ab/nsp6222T222TacTacC164164B.1.1.710.993939
ORF1ab/nsp6222T222TacTacC1426B.1.1.70.000013
ORF1ab/nsp6222T222TacTacG1226B.1.1.70.000011
ORF1ab/nsp6222T222TacTacC1921AY.40.00003
ORF1ab/nsp6222T222TacTacA121AY.40.000002
ORF1ab/nsp6222T222TacTacG121AY.40.000002
ORF1ab/nsp6222T222TacTacC1919B.1.1.4090.053824
ORF1ab/nsp6222T222TacTacC1115B.10.000101
ORF1ab/nsp6222T222TacTacA215B.10.000018
ORF1ab/nsp6222T222TacTacG215B.10.000018
ORF1ab/nsp6222T222TacTacC89AY.450.000973
ORF1ab/nsp6222T222TacTacG19AY.450.000122
ORF1ab/nsp6222T222TacTacC78B.1.1770.000092
ORF1ab/nsp6222T222TacTacG18B.1.1770.000013
ORF1ab/nsp6222T222TacTacC55B.1.10.000091
ORF1ab/nsp6222T222TacTacC55B.1.20.000044
ORF1ab/nsp6222T222TacTacG23AY.1020.000053
ORF1ab/nsp6222T222TacTacC13AY.1020.000027
ORF1ab/nsp6222T222TacTacC23B.1.5260.000047
ORF1ab/nsp6222T222TacTacG13B.1.5260.000024
ORF1ab/nsp6222T222TacTacC23B.1.617.20.000008
ORF1ab/nsp6222T222TacTacG13B.1.617.20.000004
ORF1ab/nsp6222T222TacTacG33B.1.6210.000266
ORF1ab/nsp6222T222TacTacC220.111111
ORF1ab/nsp6222T222TacTacG22AY.1200.000074
ORF1ab/nsp6222T222TacTacC12AY.440.000006
ORF1ab/nsp6222T222TacTacG12AY.440.000006
ORF1ab/nsp6222T222TacTacC22P.10.000032
ORF1ab/nsp6222T222TacTacC11AM.40.003571
ORF1ab/nsp6222T222TacTacC11AU.30.00211
ORF1ab/nsp6222T222TacTacC11AY.1030.000006
ORF1ab/nsp6222T222TacTacC11AY.250.000006
ORF1ab/nsp6222T222TacTacC11AY.260.000028
ORF1ab/nsp6222T222TacTacG11AY.30.00001
ORF1ab/nsp6222T222TacTacC11AY.430.000004
ORF1ab/nsp6222T222TacTacG11AY.50.000021
ORF1ab/nsp6222T222TacTacC11AY.670.000464
ORF1ab/nsp6222T222TacTacC11AY.70.000196
ORF1ab/nsp6222T222TacTacC11AY.750.000056
ORF1ab/nsp6222T222TacTacC11AY.980.000079
ORF1ab/nsp6222T222TacTacC11B0.000128
ORF1ab/nsp6222T222TacTacG11B.1.1.2630.001558
ORF1ab/nsp6222T222TacTacC11B.1.160.260.002421
ORF1ab/nsp6222T222TacTacC11B.1.177.210.000076
ORF1ab/nsp6222T222TacTacG11B.1.360.000146
ORF1ab/nsp6222T222TacTacC11B.1.4000.000429
ORF1ab/nsp6222T222TacTacC11B.1.5250.000113
ORF1ab/nsp6222T222TacTacA11B.1.5280.047619
ORF1ab/nsp6222T222TacTacA11B.400.000364