CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 257 | Q257H | Q3826H | nonsyn | caG | caT | 1618 | 1594 | 0.985167 | 11741-11743 |
ORF1ab/nsp6 | 257 | Q257H | Q3826H | nonsyn | caG | caC | 1618 | 24 | 0.0148331 | 11741-11743 |
Details of the mutation Q257H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1594 | 1618 | All | 0.000305 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 24 | 1618 | All | 0.000005 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 151 | 157 | B.1.1.7 | 0.000135 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 6 | 157 | B.1.1.7 | 0.000005 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 116 | 116 | AY.4 | 0.000181 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 113 | 113 | AY.9.2 | 0.00415 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 103 | 103 | AY.39 | 0.002545 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 88 | 88 | AY.25 | 0.000529 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 80 | 80 | B.1.526 | 0.00188 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 77 | 77 | AY.43 | 0.000341 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 73 | 74 | AY.3 | 0.000726 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 74 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 66 | 66 | B.1.617.2 | 0.000249 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 63 | 66 | P.1 | 0.000993 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 3 | 66 | P.1 | 0.000047 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 51 | 52 | AY.44 | 0.00031 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 52 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 39 | 39 | B.1.1.93 | 1 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 36 | 36 | AY.103 | 0.000224 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 36 | 36 | AY.7 | 0.007056 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 31 | 31 | B.1.561 | 0.012306 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 28 | 28 | AY.7.1 | 0.003156 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 24 | 24 | AY.26 | 0.000679 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 24 | 24 | B.1.351 | 0.000713 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 21 | 21 | AY.98 | 0.001659 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 17 | 18 | B.1.2 | 0.00015 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 18 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 17 | 17 | B.1.1.121 | 0.041262 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 14 | 14 | B.1.590 | 0.063636 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 9 | B.1.177 | 0.000105 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 9 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 8 | A.2.5 | 0.003992 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 6 | 6 | AY.120.2.1 | 0.00299 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 6 | 6 | AY.57 | 0.003937 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 5 | 5 | K.3 | 0.030864 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | B.1.126 | 0.005102 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | B.1.406 | 0.024242 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | B.1.1.280 | 0.006173 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AA.5 | 0.016129 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp6 | 257 | Q257H | caG | caC | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp6 | 257 | Q257H | caG | caT | 1 | 1 | Q.6 | 0.006623 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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