CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = Q208R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6208Q208RQ3777RnonsyncAgcGg10041100290.99880511594-11596
ORF1ab/nsp6208Q208RQ3777RnonsyncAGcGT10041120.001195111594-11596

Details of the mutation Q208R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6208Q208RcAgcGg1002910041All0.001918
ORF1ab/nsp6208Q208RcAGcGT1210041All0.000002
ORF1ab/nsp6208Q208RcAgcGg31633163B.1.177.210.241875
ORF1ab/nsp6208Q208RcAgcGg13101310AY.1090.968935
ORF1ab/nsp6208Q208RcAgcGg12971297AY.30.0129
ORF1ab/nsp6208Q208RcAgcGg10351035AY.40.001611
ORF1ab/nsp6208Q208RcAgcGg401413AY.440.002441
ORF1ab/nsp6208Q208RcAGcGT12413AY.440.000073
ORF1ab/nsp6208Q208RcAgcGg352352AY.250.002117
ORF1ab/nsp6208Q208RcAgcGg244244AY.1020.006469
ORF1ab/nsp6208Q208RcAgcGg240240B.1.617.20.000904
ORF1ab/nsp6208Q208RcAgcGg152152AY.50.003139
ORF1ab/nsp6208Q208RcAgcGg135135B.1.1.70.000121
ORF1ab/nsp6208Q208RcAgcGg132132B.1.36.290.068288
ORF1ab/nsp6208Q208RcAgcGg124124B.1.20.001092
ORF1ab/nsp6208Q208RcAgcGg112112AY.1180.007017
ORF1ab/nsp6208Q208RcAgcGg100100B.1.438.10.010726
ORF1ab/nsp6208Q208RcAgcGg8383B.1.360.01211
ORF1ab/nsp6208Q208RcAgcGg8080AY.390.001977
ORF1ab/nsp6208Q208RcAgcGg7878B.10.000714
ORF1ab/nsp6208Q208RcAgcGg6969B.1.243.21
ORF1ab/nsp6208Q208RcAgcGg5757AY.430.000253
ORF1ab/nsp6208Q208RcAgcGg5050AY.330.003339
ORF1ab/nsp6208Q208RcAgcGg4242AY.1030.000261
ORF1ab/nsp6208Q208RcAgcGg3939AY.9.20.001432
ORF1ab/nsp6208Q208RcAgcGg3737B.1.10.000671
ORF1ab/nsp6208Q208RcAgcGg3232B.1.3340.581818
ORF1ab/nsp6208Q208RcAgcGg3030B.1.1770.000395
ORF1ab/nsp6208Q208RcAgcGg2828AY.1190.000989
ORF1ab/nsp6208Q208RcAgcGg2424AY.4.20.000521
ORF1ab/nsp6208Q208RcAgcGg1818AY.460.001873
ORF1ab/nsp6208Q208RcAgcGg1818B.1.2210.001279
ORF1ab/nsp6208Q208RcAgcGg1616AY.1210.002165
ORF1ab/nsp6208Q208RcAgcGg1515AY.4.40.006137
ORF1ab/nsp6208Q208RcAgcGg1515B.1.2400.003233
ORF1ab/nsp6208Q208RcAgcGg1212AY.880.01061
ORF1ab/nsp6208Q208RcAgcGg1212AY.99.20.001106
ORF1ab/nsp6208Q208RcAgcGg1212B.1.4290.000282
ORF1ab/nsp6208Q208RcAgcGg1111AY.290.000174
ORF1ab/nsp6208Q208RcAgcGg1111B.1.177.540.006671
ORF1ab/nsp6208Q208RcAgcGg1010AY.3.10.000853
ORF1ab/nsp6208Q208RcAgcGg1010AY.920.002873
ORF1ab/nsp6208Q208RcAgcGg1010AY.950.00761
ORF1ab/nsp6208Q208RcAgcGg1010B0.001278
ORF1ab/nsp6208Q208RcAgcGg1010B.1.1.2220.00204
ORF1ab/nsp6208Q208RcAgcGg99B.1.177.50.01118
ORF1ab/nsp6208Q208RcAgcGg88AY.1110.001465
ORF1ab/nsp6208Q208RcAgcGg88AY.46.60.000578
ORF1ab/nsp6208Q208RcAgcGg77AY.1000.000322
ORF1ab/nsp6208Q208RcAgcGg77AY.1200.00026
ORF1ab/nsp6208Q208RcAgcGg77AY.450.000852
ORF1ab/nsp6208Q208RcAgcGg77AY.7.10.000789
ORF1ab/nsp6208Q208RcAgcGg77AY.910.005113
ORF1ab/nsp6208Q208RcAgcGg77AY.98.10.000339
ORF1ab/nsp6208Q208RcAgcGg77B.1.1600.000218
ORF1ab/nsp6208Q208RcAgcGg77B.1.177.870.005095
ORF1ab/nsp6208Q208RcAgcGg77B.1.2580.000466
ORF1ab/nsp6208Q208RcAgcGg77B.1.5260.000165
ORF1ab/nsp6208Q208RcAgcGg66AY.230.000418
ORF1ab/nsp6208Q208RcAgcGg66AY.360.000889
ORF1ab/nsp6208Q208RcAgcGg66AY.690.00112
ORF1ab/nsp6208Q208RcAgcGg66B.1.5820.002944
ORF1ab/nsp6208Q208RcAgcGg55AY.260.000142
ORF1ab/nsp6208Q208RcAgcGg55AY.410.00147
ORF1ab/nsp6208Q208RcAgcGg55AY.640.002976
ORF1ab/nsp6208Q208RcAgcGg55AY.840.002187
ORF1ab/nsp6208Q208RcAgcGg55AY.980.000395
ORF1ab/nsp6208Q208RcAgcGg55B.1.177.860.000917
ORF1ab/nsp6208Q208RcAgcGg55R.10.00045
ORF1ab/nsp6208Q208RcAgcGg44AY.1050.002572
ORF1ab/nsp6208Q208RcAgcGg44AY.4.50.00043
ORF1ab/nsp6208Q208RcAgcGg44AY.420.000161
ORF1ab/nsp6208Q208RcAgcGg44AY.5.30.00135
ORF1ab/nsp6208Q208RcAgcGg44AY.60.000165
ORF1ab/nsp6208Q208RcAgcGg44B.1.1.410.025316
ORF1ab/nsp6208Q208RcAgcGg44B.1.1.5190.000159
ORF1ab/nsp6208Q208RcAgcGg44B.1.1.630.001543
ORF1ab/nsp6208Q208RcAgcGg44B.1.177.810.000757
ORF1ab/nsp6208Q208RcAgcGg44B.1.3710.004489
ORF1ab/nsp6208Q208RcAgcGg44B.1.4000.001716
ORF1ab/nsp6208Q208RcAgcGg44B.1.617.10.000516
ORF1ab/nsp6208Q208RcAgcGg33AY.1100.000338
ORF1ab/nsp6208Q208RcAgcGg33AY.1170.000254
ORF1ab/nsp6208Q208RcAgcGg33AY.160.001139
ORF1ab/nsp6208Q208RcAgcGg33AY.34.10.00153
ORF1ab/nsp6208Q208RcAgcGg33AY.500.002398
ORF1ab/nsp6208Q208RcAgcGg33AY.610.000314
ORF1ab/nsp6208Q208RcAgcGg33AY.780.004622
ORF1ab/nsp6208Q208RcAgcGg33AY.790.003632
ORF1ab/nsp6208Q208RcAgcGg33B.1.1.3480.002389
ORF1ab/nsp6208Q208RcAgcGg33B.1.1420.008696
ORF1ab/nsp6208Q208RcAgcGg33B.1.177.820.001432
ORF1ab/nsp6208Q208RcAgcGg33B.1.2430.000209
ORF1ab/nsp6208Q208RcAgcGg33B.1.2600.010033
ORF1ab/nsp6208Q208RcAgcGg33B.1.2890.007979
ORF1ab/nsp6208Q208RcAgcGg33B.1.3510.000089
ORF1ab/nsp6208Q208RcAgcGg33B.1.4560.009804
ORF1ab/nsp6208Q208RcAgcGg33B.1.466.20.001174
ORF1ab/nsp6208Q208RcAgcGg33B.1.5960.000261
ORF1ab/nsp6208Q208RcAgcGg33B.550.00885
ORF1ab/nsp6208Q208RcAgcGg33D.20.000225
ORF1ab/nsp6208Q208RcAgcGg22AA.70.018349
ORF1ab/nsp6208Q208RcAgcGg22AY.1070.000932
ORF1ab/nsp6208Q208RcAgcGg22AY.1130.000285
ORF1ab/nsp6208Q208RcAgcGg22AY.1160.000574
ORF1ab/nsp6208Q208RcAgcGg22AY.120.2.10.000997
ORF1ab/nsp6208Q208RcAgcGg22AY.200.000078
ORF1ab/nsp6208Q208RcAgcGg22AY.270.000129
ORF1ab/nsp6208Q208RcAgcGg22AY.39.10.000079
ORF1ab/nsp6208Q208RcAgcGg22AY.770.002255
ORF1ab/nsp6208Q208RcAgcGg22AY.960.004149
ORF1ab/nsp6208Q208RcAgcGg22B.1.1.2160.001781
ORF1ab/nsp6208Q208RcAgcGg22B.1.1.2940.002532
ORF1ab/nsp6208Q208RcAgcGg22B.1.1.4320.002532
ORF1ab/nsp6208Q208RcAgcGg22B.1.177.440.001038
ORF1ab/nsp6208Q208RcAgcGg22B.1.177.570.000562
ORF1ab/nsp6208Q208RcAgcGg22B.1.3490.00143
ORF1ab/nsp6208Q208RcAgcGg22B.1.36.100.009569
ORF1ab/nsp6208Q208RcAgcGg22B.1.36.190.018519
ORF1ab/nsp6208Q208RcAgcGg22B.1.36.80.002
ORF1ab/nsp6208Q208RcAgcGg22B.1.5510.002581
ORF1ab/nsp6208Q208RcAgcGg22B.1.5670.006667
ORF1ab/nsp6208Q208RcAgcGg22B.1.5950.000522
ORF1ab/nsp6208Q208RcAgcGg22B.30.001661
ORF1ab/nsp6208Q208RcAgcGg22C.310.035714
ORF1ab/nsp6208Q208RcAgcGg22C.320.046512
ORF1ab/nsp6208Q208RcAgcGg11A.10.000282
ORF1ab/nsp6208Q208RcAgcGg11A.2.50.000499
ORF1ab/nsp6208Q208RcAgcGg11AU.20.002421
ORF1ab/nsp6208Q208RcAgcGg11AU.30.00211
ORF1ab/nsp6208Q208RcAgcGg11AY.116.10.000311
ORF1ab/nsp6208Q208RcAgcGg11AY.130.000161
ORF1ab/nsp6208Q208RcAgcGg11AY.16.10.00047
ORF1ab/nsp6208Q208RcAgcGg11AY.190.00114
ORF1ab/nsp6208Q208RcAgcGg11AY.240.000431
ORF1ab/nsp6208Q208RcAgcGg11AY.320.000532
ORF1ab/nsp6208Q208RcAgcGg11AY.46.20.000635
ORF1ab/nsp6208Q208RcAgcGg11AY.5.40.000277
ORF1ab/nsp6208Q208RcAgcGg11AY.520.000814
ORF1ab/nsp6208Q208RcAgcGg11AY.670.000464
ORF1ab/nsp6208Q208RcAgcGg11AY.720.001361
ORF1ab/nsp6208Q208RcAgcGg11AY.740.000116
ORF1ab/nsp6208Q208RcAgcGg11AY.750.000056
ORF1ab/nsp6208Q208RcAgcGg11AY.820.001357
ORF1ab/nsp6208Q208RcAgcGg11AY.870.000833
ORF1ab/nsp6208Q208RcAgcGg11AY.890.004902
ORF1ab/nsp6208Q208RcAgcGg11AY.900.000684
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.1410.002012
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.1420.017544
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.1630.007634
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.2140.000055
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.2630.001558
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.280.000311
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.2840.000107
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.2860.002899
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.3110.000358
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.3170.000412
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.3180.000302
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.330.000421
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.3720.000689
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.4090.002833
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.4160.000905
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.4480.002033
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.4820.023256
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.5180.006329
ORF1ab/nsp6208Q208RcAgcGg11B.1.1.700.000341
ORF1ab/nsp6208Q208RcAgcGg11B.1.110.30.000718
ORF1ab/nsp6208Q208RcAgcGg11B.1.1260.001276
ORF1ab/nsp6208Q208RcAgcGg11B.1.160.160.000929
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.120.000152
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.150.000631
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.170.000821
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.190.001431
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.320.00135
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.510.004566
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.630.002703
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.70.000165
ORF1ab/nsp6208Q208RcAgcGg11B.1.177.730.000566
ORF1ab/nsp6208Q208RcAgcGg11B.1.2060.000816
ORF1ab/nsp6208Q208RcAgcGg11B.1.2100.002132
ORF1ab/nsp6208Q208RcAgcGg11B.1.2340.000132
ORF1ab/nsp6208Q208RcAgcGg11B.1.2470.014925
ORF1ab/nsp6208Q208RcAgcGg11B.1.3110.000275
ORF1ab/nsp6208Q208RcAgcGg11B.1.36.240.006173
ORF1ab/nsp6208Q208RcAgcGg11B.1.4270.00005
ORF1ab/nsp6208Q208RcAgcGg11B.1.4590.004082
ORF1ab/nsp6208Q208RcAgcGg11B.1.4680.005714
ORF1ab/nsp6208Q208RcAgcGg11B.1.4740.001901
ORF1ab/nsp6208Q208RcAgcGg11B.1.5250.000113
ORF1ab/nsp6208Q208RcAgcGg11B.1.5640.000426
ORF1ab/nsp6208Q208RcAgcGg11B.1.5750.000303
ORF1ab/nsp6208Q208RcAgcGg11B.1.5870.001898
ORF1ab/nsp6208Q208RcAgcGg11B.1.6020.006536
ORF1ab/nsp6208Q208RcAgcGg11B.1.6060.006024
ORF1ab/nsp6208Q208RcAgcGg11B.1.6090.000479
ORF1ab/nsp6208Q208RcAgcGg11B.1.6210.000089
ORF1ab/nsp6208Q208RcAgcGg11B.1.621.10.000506
ORF1ab/nsp6208Q208RcAgcGg11B.3.10.001658
ORF1ab/nsp6208Q208RcAgcGg11B.400.000364
ORF1ab/nsp6208Q208RcAgcGg11B.450.003831
ORF1ab/nsp6208Q208RcAgcGg11B.6.60.000889
ORF1ab/nsp6208Q208RcAgcGg11C.130.025641
ORF1ab/nsp6208Q208RcAgcGg11C.350.000774
ORF1ab/nsp6208Q208RcAgcGg11P.1.140.000048
ORF1ab/nsp6208Q208RcAgcGg11P.1.150.000232
ORF1ab/nsp6208Q208RcAgcGg11P.1.80.004785
ORF1ab/nsp6208Q208RcAgcGg11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.