CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 198 | P198L | P3767L | nonsyn | cCt | cTt | 3458 | 3450 | 0.997687 | 11564-11566 |
ORF1ab/nsp6 | 198 | P198L | P3767L | nonsyn | cCT | cTA | 3458 | 3 | 0.000867554 | 11564-11566 |
ORF1ab/nsp6 | 198 | P198L | P3767L | nonsyn | cCT | cTG | 3458 | 2 | 0.000578369 | 11564-11566 |
ORF1ab/nsp6 | 198 | P198L | P3767L | nonsyn | CCT | TTG | 3458 | 2 | 0.000578369 | 11564-11566 |
ORF1ab/nsp6 | 198 | P198L | P3767L | nonsyn | cCT | cTC | 3458 | 1 | 0.000289185 | 11564-11566 |
Details of the mutation P198L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3450 | 3458 | All | 0.00066 |
ORF1ab/nsp6 | 198 | P198L | cCT | cTA | 3 | 3458 | All | 0.000001 |
ORF1ab/nsp6 | 198 | P198L | cCT | cTG | 2 | 3458 | All | 0 |
ORF1ab/nsp6 | 198 | P198L | CCT | TTG | 2 | 3458 | All | 0 |
ORF1ab/nsp6 | 198 | P198L | cCT | cTC | 1 | 3458 | All | 0 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2044 | 2045 | B.1.1.7 | 0.00183 |
ORF1ab/nsp6 | 198 | P198L | cCT | cTA | 1 | 2045 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 263 | 263 | L.3 | 0.932624 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 171 | 171 | AY.4 | 0.000266 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 109 | 109 | AY.25 | 0.000656 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 91 | 91 | B.1.617.2 | 0.000343 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 73 | 73 | AY.103 | 0.000453 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 71 | 71 | AY.74 | 0.008211 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 63 | 63 | AY.44 | 0.000383 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 56 | 56 | AY.45 | 0.006814 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 45 | 45 | AY.42 | 0.00181 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 18 | 18 | Q.8 | 0.002968 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 16 | 16 | AY.9.1 | 0.00134 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 15 | 15 | AY.4.5 | 0.001612 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 7 | 12 | 0.388889 | |
ORF1ab/nsp6 | 198 | P198L | cCT | cTA | 2 | 12 | 0.111111 | |
ORF1ab/nsp6 | 198 | P198L | cCT | cTG | 1 | 12 | 0.055556 | |
ORF1ab/nsp6 | 198 | P198L | CCT | TTG | 1 | 12 | 0.055556 | |
ORF1ab/nsp6 | 198 | P198L | cCT | cTC | 1 | 12 | 0.055556 | |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 12 | 12 | AY.98 | 0.000948 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 8 | 8 | AY.99.1 | 0.012422 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 6 | 8 | B.1.221 | 0.000426 |
ORF1ab/nsp6 | 198 | P198L | cCT | cTG | 1 | 8 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 198 | P198L | CCT | TTG | 1 | 8 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 6 | 6 | B.1.279 | 0.003082 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 5 | 5 | B.1.1.207 | 0.00591 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 4 | 4 | B.1.1.10 | 0.004459 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp6 | 198 | P198L | cCt | cTt | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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