CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = M192T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6192M192TM3761TnonsynaTgaCg4614590.99566211546-11548
ORF1ab/nsp6192M192TM3761TnonsynaTGaCC46110.002169211546-11548
ORF1ab/nsp6192M192TM3761TnonsynaTGaCA46110.002169211546-11548

Details of the mutation M192T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6192M192TaTgaCg459461All0.000088
ORF1ab/nsp6192M192TaTGaCA1461All0
ORF1ab/nsp6192M192TaTGaCC1461All0
ORF1ab/nsp6192M192TaTgaCg212212AY.460.022065
ORF1ab/nsp6192M192TaTgaCg8686B.1.4270.004343
ORF1ab/nsp6192M192TaTgaCg5252P.1.100.014012
ORF1ab/nsp6192M192TaTgaCg1616AY.260.000453
ORF1ab/nsp6192M192TaTgaCg1313AY.40.00002
ORF1ab/nsp6192M192TaTgaCg89B.10.000073
ORF1ab/nsp6192M192TaTGaCA19B.10.000009
ORF1ab/nsp6192M192TaTgaCg99B.1.1.70.000008
ORF1ab/nsp6192M192TaTgaCg99B.1.3510.000268
ORF1ab/nsp6192M192TaTgaCg66AY.4.20.00013
ORF1ab/nsp6192M192TaTgaCg66B.1.258.170.000624
ORF1ab/nsp6192M192TaTgaCg55AY.1030.000031
ORF1ab/nsp6192M192TaTgaCg44AY.1020.000106
ORF1ab/nsp6192M192TaTgaCg44AY.250.000024
ORF1ab/nsp6192M192TaTgaCg23AY.430.000009
ORF1ab/nsp6192M192TaTGaCC13AY.430.000004
ORF1ab/nsp6192M192TaTgaCg33B.1.20.000026
ORF1ab/nsp6192M192TaTgaCg33B.1.617.20.000011
ORF1ab/nsp6192M192TaTgaCg22AY.1170.000169
ORF1ab/nsp6192M192TaTgaCg22B.1.1770.000026
ORF1ab/nsp6192M192TaTgaCg22B.1.5750.000607
ORF1ab/nsp6192M192TaTgaCg22P.10.000032
ORF1ab/nsp6192M192TaTgaCg11AY.1200.000037
ORF1ab/nsp6192M192TaTgaCg11AY.140.000088
ORF1ab/nsp6192M192TaTgaCg11AY.290.000016
ORF1ab/nsp6192M192TaTgaCg11AY.330.000067
ORF1ab/nsp6192M192TaTgaCg11AY.420.00004
ORF1ab/nsp6192M192TaTgaCg11AY.440.000006
ORF1ab/nsp6192M192TaTgaCg11AY.46.20.000635
ORF1ab/nsp6192M192TaTgaCg11AY.690.000187
ORF1ab/nsp6192M192TaTgaCg11AY.740.000116
ORF1ab/nsp6192M192TaTgaCg11B0.000128
ORF1ab/nsp6192M192TaTgaCg11B.1.466.20.000391
ORF1ab/nsp6192M192TaTgaCg11B.1.617.10.000129
ORF1ab/nsp6192M192TaTgaCg11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.