CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 164 | M164I | M3733I | nonsyn | atG | atA | 2760 | 2667 | 0.966304 | 11462-11464 |
ORF1ab/nsp6 | 164 | M164I | M3733I | nonsyn | atG | atT | 2760 | 78 | 0.0282609 | 11462-11464 |
ORF1ab/nsp6 | 164 | M164I | M3733I | nonsyn | atG | atC | 2760 | 15 | 0.00543478 | 11462-11464 |
Details of the mutation M164I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2667 | 2760 | All | 0.00051 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 78 | 2760 | All | 0.000015 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 15 | 2760 | All | 0.000003 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1246 | 1247 | B.1.617.2 | 0.004692 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 1247 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 551 | 553 | AY.43 | 0.002441 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 2 | 553 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 187 | 235 | B.1.1.7 | 0.000167 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 48 | 235 | B.1.1.7 | 0.000043 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 132 | 132 | B.1.1.210 | 0.754286 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 90 | 90 | AY.46 | 0.009367 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 71 | 71 | AY.39 | 0.001755 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 47 | 47 | AY.44 | 0.000286 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 36 | 36 | AY.99 | 0.037775 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 33 | 34 | AY.103 | 0.000205 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 34 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 25 | 31 | B.1 | 0.000229 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 5 | 31 | B.1 | 0.000046 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 31 | B.1 | 0.000009 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 29 | 29 | B.1.177.65 | 0.019295 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 20 | 21 | P.1 | 0.000315 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 21 | P.1 | 0.000016 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 19 | 19 | B.1.637 | 0.001388 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 14 | 14 | AY.12 | 0.004425 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 11 | 13 | AY.4 | 0.000017 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 2 | 13 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 11 | 13 | B.1.1 | 0.0002 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 13 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 13 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 9 | 10 | AY.25 | 0.000054 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 10 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 8 | 8 | AY.10 | 0.00424 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 3 | 8 | B.1.526 | 0.000071 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 3 | 8 | B.1.526 | 0.000071 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 2 | 8 | B.1.526 | 0.000047 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 5 | 5 | B.1.561 | 0.001985 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 4 | 5 | D.2 | 0.0003 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 5 | D.2 | 0.000075 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 4 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 2 | 4 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 3 | 4 | AY.9.2 | 0.00011 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 4 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 2 | AY.94 | 0.000443 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 2 | AY.94 | 0.000443 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 2 | B.1.1.416 | 0.000905 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 2 | B.1.1.416 | 0.000905 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.1.30 | 0.076923 |
ORF1ab/nsp6 | 164 | M164I | atG | atC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 164 | M164I | atG | atT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 164 | M164I | atG | atA | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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