CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 207 | L207F | L3776F | nonsyn | Ctt | Ttt | 3367 | 3367 | 1 | 11591-11593 |
Details of the mutation L207F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3367 | 3367 | All | 0.000644 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2837 | 2837 | B.1.1.434 | 0.988846 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 98 | 98 | B.1.2 | 0.000863 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 85 | 85 | B.1.543 | 0.85 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 44 | 44 | B.1.258.3 | 0.073702 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 35 | 35 | B.1 | 0.000321 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 24 | 24 | B.1.177.73 | 0.01359 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 13 | 13 | B.1.400 | 0.005577 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 5 | 5 | 0.277778 | |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | AU.3 | 0.006329 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | B.1.177.69 | 0.004451 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 207 | L207F | Ctt | Ttt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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