CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 142 | L142F | L3711F | nonsyn | Ctt | Ttt | 8919 | 8919 | 1 | 11396-11398 |
Details of the mutation L142F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 8919 | 8919 | All | 0.001706 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 7492 | 7492 | B.1.177 | 0.098652 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 190 | 190 | AY.44 | 0.001156 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 131 | 131 | B.1.177.67 | 1 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 125 | 125 | B.1.1.7 | 0.000112 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 122 | 122 | B.1.617.2 | 0.000459 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 84 | 84 | B.1.160 | 0.00262 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 73 | 73 | AY.4 | 0.000114 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 70 | 70 | B.1.221 | 0.004972 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 66 | 66 | B.1.177.47 | 0.857143 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 52 | 52 | B.1.234 | 0.006861 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 47 | 47 | B.1 | 0.00043 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 41 | 41 | P.1 | 0.000646 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 26 | 26 | AY.103 | 0.000161 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 24 | 24 | B.1.177.66 | 1 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 21 | 21 | B.1.264.1 | 1 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 12 | 12 | B.1.199 | 0.049587 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 12 | 12 | B.1.329 | 0.00729 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 11 | 11 | B.1.336 | 0.026829 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 7 | 7 | B.1.1.318 | 0.002112 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 5 | 5 | B.1.351.2 | 0.001513 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 4 | 4 | B.1.314 | 0.030075 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.108 | 0.011628 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 142 | L142F | Ctt | Ttt | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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