CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 284 | I284I | I3853I | syn | atC | atT | 16372 | 15510 | 0.947349 | 11822-11824 |
ORF1ab/nsp6 | 284 | I284I | I3853I | syn | atC | atA | 16372 | 862 | 0.0526509 | 11822-11824 |
Details of the mutation I284I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 15510 | 16372 | All | 0.002966 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 862 | 16372 | All | 0.000165 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5326 | 5326 | P.2 | 0.994028 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2351 | 2356 | B.1.1.7 | 0.002105 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 5 | 2356 | B.1.1.7 | 0.000004 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2070 | 2100 | AY.4 | 0.003222 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 30 | 2100 | AY.4 | 0.000047 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 642 | 681 | B.1.1.519 | 0.025494 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 39 | 681 | B.1.1.519 | 0.001549 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 358 | 365 | B.1.617.2 | 0.001348 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 7 | 365 | B.1.617.2 | 0.000026 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 353 | 355 | AY.43 | 0.001564 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 2 | 355 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 324 | 324 | AY.3 | 0.003223 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 266 | 270 | AY.103 | 0.001652 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 4 | 270 | AY.103 | 0.000025 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 252 | 252 | AY.44 | 0.001534 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 248 | 248 | A.21 | 0.686981 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 222 | 222 | AY.26 | 0.006285 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 184 | 198 | B.1 | 0.001685 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 14 | 198 | B.1 | 0.000128 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 180 | 182 | AY.47 | 0.005599 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 2 | 182 | AY.47 | 0.000062 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 157 | 159 | B.1.2 | 0.001382 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 2 | 159 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 143 | 143 | B.1.177.26 | 1 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 131 | 137 | B.1.177 | 0.001725 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 6 | 137 | B.1.177 | 0.000079 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 129 | 129 | AY.25 | 0.000776 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 108 | 108 | B.1.160 | 0.003368 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 99 | 104 | B.1.1 | 0.001796 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 5 | 104 | B.1.1 | 0.000091 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 104 | 104 | B.1.324 | 0.166934 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 94 | 94 | B.1.637 | 0.006869 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 79 | 82 | AY.111 | 0.014469 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 82 | AY.111 | 0.000549 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 76 | 76 | B.1.429 | 0.001788 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 67 | 67 | B.1.36.35 | 0.174479 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 61 | 66 | P.1 | 0.000961 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 5 | 66 | P.1 | 0.000079 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 58 | 63 | AY.75 | 0.003249 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 5 | 63 | AY.75 | 0.00028 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 63 | 63 | B.1.177.12 | 0.009557 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 60 | 60 | AY.9.2 | 0.002204 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 59 | 59 | B.1.160.16 | 0.054833 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 57 | 58 | B.1.526 | 0.00134 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 58 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 54 | 55 | AY.98.1 | 0.002615 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 55 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 46 | 46 | AY.102 | 0.00122 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 40 | 40 | B.1.1.28 | 0.012449 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 40 | 40 | B.1.243 | 0.002783 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 39 | 39 | AY.6 | 0.001604 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 39 | 39 | B.1.525 | 0.004413 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 37 | 37 | B.1.595 | 0.009656 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 34 | 34 | AY.99.2 | 0.003133 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 34 | 34 | B.1.351 | 0.001011 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 33 | 33 | B.1.1.50 | 0.022403 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 32 | 33 | C.37 | 0.003714 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 33 | C.37 | 0.000116 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 32 | 32 | B.1.1.348 | 0.025478 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 30 | 30 | AY.42 | 0.001207 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 30 | 30 | AY.5 | 0.000619 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 30 | 30 | B.1.621 | 0.002656 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 27 | 28 | AY.39 | 0.000667 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 28 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 26 | 26 | AY.57 | 0.01706 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 26 | 26 | Q.8 | 0.004288 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 25 | 25 | AY.4.2 | 0.000542 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 25 | 25 | AY.9.2.1 | 0.049407 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 25 | 25 | B.1.1.100 | 1 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 25 | 25 | B.1.234 | 0.003299 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 25 | 25 | P.1.9 | 0.120192 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 24 | 24 | AY.92 | 0.006895 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 21 | 24 | B.1.1.222 | 0.004284 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 3 | 24 | B.1.1.222 | 0.000612 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 24 | 24 | B.1.596 | 0.002091 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 23 | 23 | B.1.399 | 0.044487 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 20 | 21 | AY.100 | 0.00092 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 21 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 21 | 21 | AY.95 | 0.015982 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 21 | 21 | B.1.232 | 0.011284 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 18 | 20 | AY.29 | 0.000284 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 2 | 20 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 19 | 19 | B.1.1.277 | 0.014416 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 19 | 19 | B.1.551 | 0.024516 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 18 | 18 | AY.119 | 0.000636 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 18 | 18 | AY.4.5 | 0.001935 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 18 | 18 | R.1 | 0.00162 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 17 | 17 | B.1.177.86 | 0.003119 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 16 | 16 | B.1.1.33 | 0.006734 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 16 | 16 | B.1.1.387 | 0.941176 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 15 | 15 | B.1.240 | 0.003233 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 15 | 15 | Q.1 | 0.001895 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 14 | 14 | AY.117 | 0.001183 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 14 | 14 | AY.39.1 | 0.000555 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 14 | 14 | B.1.177.44 | 0.007265 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 11 | 14 | B.1.36.29 | 0.005691 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 3 | 14 | B.1.36.29 | 0.001552 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 14 | 14 | C.36.3 | 0.007941 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 14 | 14 | P.1.10 | 0.003773 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 13 | 13 | B.1.1.37 | 0.002507 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 13 | 13 | B.1.177.72 | 0.044068 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 12 | 12 | B.1.351.2 | 0.003631 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 11 | 11 | B.1.177.73 | 0.006229 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 10 | 10 | B.1.128 | 0.006353 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | AY.79 | 0.010896 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | B.1.438.1 | 0.000965 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 9 | 9 | B.1.609 | 0.004314 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 7 | 7 | AY.8 | 0.004242 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 7 | 7 | B | 0.000895 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | AZ.2 | 0.004926 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 6 | B.1.1.306 | 0.001315 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 3 | 6 | B.1.1.306 | 0.001315 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | B.1.36.17 | 0.002964 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | B.1.36.18 | 0.002521 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | A | 0.001935 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | AY.120.1 | 0.001605 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 3 | 5 | AY.87 | 0.002498 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 5 | AY.87 | 0.001665 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | B.1.351.3 | 0.004382 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | B.1.401 | 0.040984 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | B.1.580 | 0.020325 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | B.1.1.261 | 0.034483 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | B.1.1.448 | 0.00813 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | B.52 | 0.040404 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 4 | 4 | P.6 | 0.012579 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.329 | 0.001823 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.36.36 | 0.001806 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 3 | B.1.497 | 0.00063 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 3 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.595.1 | 0.017544 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 2 | A.1 | 0.000282 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 2 | A.1 | 0.000282 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AE.5 | 0.037037 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 2 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 2 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.120 | 0.066667 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 2 | B.1.189 | 0.004292 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 2 | B.1.189 | 0.004292 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.36.39 | 0.004435 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.393 | 0.057143 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.296 | 0.018182 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.273 | 0.012987 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp6 | 284 | I284I | atC | atA | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.407 | 0.035714 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.500 | 0.052632 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | R.2 | 0.014493 |
ORF1ab/nsp6 | 284 | I284I | atC | atT | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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