CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 162 | I162V | I3731V | nonsyn | Att | Gtt | 118538 | 118533 | 0.999958 | 11456-11458 |
ORF1ab/nsp6 | 162 | I162V | I3731V | nonsyn | AtT | GtA | 118538 | 4 | 0.0000337445 | 11456-11458 |
ORF1ab/nsp6 | 162 | I162V | I3731V | nonsyn | AtT | GtC | 118538 | 1 | 0.00000843611 | 11456-11458 |
Details of the mutation I162V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 118533 | 118538 | All | 0.022671 |
ORF1ab/nsp6 | 162 | I162V | AtT | GtA | 4 | 118538 | All | 0.000001 |
ORF1ab/nsp6 | 162 | I162V | AtT | GtC | 1 | 118538 | All | 0 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 100356 | 100357 | AY.3 | 0.99818 |
ORF1ab/nsp6 | 162 | I162V | AtT | GtC | 1 | 100357 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 11725 | 11725 | AY.3.1 | 0.999659 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 956 | 956 | B.1.617.2 | 0.0036 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 634 | 634 | AY.25 | 0.003813 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 626 | 626 | AY.117 | 0.052907 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 468 | 468 | AY.92 | 0.134444 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 446 | 446 | AY.47 | 0.013873 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 325 | 325 | AY.119 | 0.011475 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 226 | 226 | AY.84 | 0.098863 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 200 | 200 | AY.105 | 0.128617 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 178 | 178 | AY.5.3 | 0.060054 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 147 | 147 | AY.103 | 0.000913 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 142 | 142 | AY.46.6 | 0.010253 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 135 | 135 | AY.4.2 | 0.002928 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 133 | 133 | AY.5 | 0.002746 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 112 | 112 | AY.42 | 0.004506 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 102 | 102 | AY.4 | 0.000159 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 100 | 100 | AY.102 | 0.002651 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 97 | 97 | AY.23 | 0.006766 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 85 | 85 | AY.116 | 0.024376 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 83 | 83 | AY.44 | 0.000505 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 82 | 82 | AY.113 | 0.011676 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 65 | 65 | AY.110 | 0.007325 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 65 | 65 | AY.43 | 0.000288 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 56 | 56 | B.1.1.7 | 0.00005 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 48 | 48 | AY.39 | 0.001186 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 47 | 47 | AY.106 | 0.01574 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 47 | 47 | AY.45 | 0.005719 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 44 | 44 | AY.95 | 0.033486 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 39 | 39 | AY.73 | 0.025948 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 39 | 39 | B | 0.004985 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 37 | 37 | AY.46 | 0.003851 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 36 | 36 | AY.79 | 0.043584 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 34 | 34 | AY.99 | 0.035677 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 29 | 29 | AY.55 | 0.026606 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 28 | 28 | AY.62 | 0.0122 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 27 | 27 | AY.118 | 0.001692 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 24 | 24 | AY.82 | 0.032564 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 22 | 22 | AY.46.1 | 0.022587 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 22 | 22 | AY.54 | 0.002098 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 22 | 22 | AY.85 | 0.009398 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 20 | 20 | AY.96 | 0.041494 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 19 | 19 | AY.91 | 0.013879 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 17 | 17 | AY.114 | 0.003929 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 14 | 14 | AY.39.1 | 0.000555 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 13 | 13 | AY.59 | 0.006886 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 13 | 13 | B.1.596 | 0.001133 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 11 | 11 | AY.93 | 0.003004 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 9 | 9 | AY.32 | 0.004792 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 9 | 9 | AY.58 | 0.008167 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 9 | 9 | AY.7 | 0.001764 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 9 | 9 | AY.71 | 0.004276 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 8 | 8 | AY.37 | 0.002528 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 8 | 8 | AY.38 | 0.003994 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 8 | 8 | AY.41 | 0.002352 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 8 | 8 | AY.63 | 0.003095 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 8 | 8 | AY.69 | 0.001493 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 7 | 7 | AY.108 | 0.007718 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 7 | 7 | AY.57 | 0.004593 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp6 | 162 | I162V | AtT | GtA | 4 | 6 | 0.222222 | |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 5 | 5 | AY.90 | 0.003422 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.4.3 | 0.003367 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | B.1.1.375 | 0.02381 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp6 | 162 | I162V | Att | Gtt | 1 | 1 | P.1.12 | 0.000484 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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