CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = G280G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6280G280GG3849GsynggCggA635245470.71583811810-11812
ORF1ab/nsp6280G280GG3849GsynggCggT635218040.28400511810-11812
ORF1ab/nsp6280G280GG3849GsynggCggG635210.00015743111810-11812

Details of the mutation G280G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6280G280GggCggA45476352All0.00087
ORF1ab/nsp6280G280GggCggT18046352All0.000345
ORF1ab/nsp6280G280GggCggG16352All0
ORF1ab/nsp6280G280GggCggA38383846B.1.3510.11409
ORF1ab/nsp6280G280GggCggT73846B.1.3510.000208
ORF1ab/nsp6280G280GggCggG13846B.1.3510.00003
ORF1ab/nsp6280G280GggCggT464464B.1.177.150.292744
ORF1ab/nsp6280G280GggCggA265445B.1.1.70.000237
ORF1ab/nsp6280G280GggCggT180445B.1.1.70.000161
ORF1ab/nsp6280G280GggCggT278278B.1.617.10.035852
ORF1ab/nsp6280G280GggCggT205223AY.1030.001273
ORF1ab/nsp6280G280GggCggA18223AY.1030.000112
ORF1ab/nsp6280G280GggCggT177215AY.40.000275
ORF1ab/nsp6280G280GggCggA38215AY.40.000059
ORF1ab/nsp6280G280GggCggT4146P.10.000646
ORF1ab/nsp6280G280GggCggA546P.10.000079
ORF1ab/nsp6280G280GggCggT4545AA.81
ORF1ab/nsp6280G280GggCggA3645B.10.00033
ORF1ab/nsp6280G280GggCggT945B.10.000082
ORF1ab/nsp6280G280GggCggT4242B.1.438.10.004505
ORF1ab/nsp6280G280GggCggT4041B.1.2580.002662
ORF1ab/nsp6280G280GggCggA141B.1.2580.000067
ORF1ab/nsp6280G280GggCggA2331B.1.1770.000303
ORF1ab/nsp6280G280GggCggT831B.1.1770.000105
ORF1ab/nsp6280G280GggCggA1831B.1.617.20.000068
ORF1ab/nsp6280G280GggCggT1331B.1.617.20.000049
ORF1ab/nsp6280G280GggCggT1629AY.430.000071
ORF1ab/nsp6280G280GggCggA1329AY.430.000058
ORF1ab/nsp6280G280GggCggT1626AY.440.000097
ORF1ab/nsp6280G280GggCggA1026AY.440.000061
ORF1ab/nsp6280G280GggCggA2626R.10.00234
ORF1ab/nsp6280G280GggCggT2025AY.250.00012
ORF1ab/nsp6280G280GggCggA525AY.250.00003
ORF1ab/nsp6280G280GggCggA2425B.1.1600.000749
ORF1ab/nsp6280G280GggCggT125B.1.1600.000031
ORF1ab/nsp6280G280GggCggT2424AY.590.012712
ORF1ab/nsp6280G280GggCggT2424B.1.1.1760.010545
ORF1ab/nsp6280G280GggCggA2021AY.290.000315
ORF1ab/nsp6280G280GggCggT121AY.290.000016
ORF1ab/nsp6280G280GggCggA1419B.1.10.000254
ORF1ab/nsp6280G280GggCggT519B.1.10.000091
ORF1ab/nsp6280G280GggCggA1219B.1.20.000106
ORF1ab/nsp6280G280GggCggT719B.1.20.000062
ORF1ab/nsp6280G280GggCggT1616AY.200.000622
ORF1ab/nsp6280G280GggCggT913AY.30.00009
ORF1ab/nsp6280G280GggCggA413AY.30.00004
ORF1ab/nsp6280G280GggCggA1313AY.340.001261
ORF1ab/nsp6280G280GggCggT1313Q.40.005912
ORF1ab/nsp6280G280GggCggT1111B.1.36.180.004622
ORF1ab/nsp6280G280GggCggA610B.1.4290.000141
ORF1ab/nsp6280G280GggCggT410B.1.4290.000094
ORF1ab/nsp6280G280GggCggT99A.2.50.004491
ORF1ab/nsp6280G280GggCggT79AY.1020.000186
ORF1ab/nsp6280G280GggCggA29AY.1020.000053
ORF1ab/nsp6280G280GggCggT99B.1.1.2140.000499
ORF1ab/nsp6280G280GggCggA88AY.1060.002679
ORF1ab/nsp6280G280GggCggT88B.1.4000.003432
ORF1ab/nsp6280G280GggCggT47AY.390.000099
ORF1ab/nsp6280G280GggCggA37AY.390.000074
ORF1ab/nsp6280G280GggCggT57AY.450.000608
ORF1ab/nsp6280G280GggCggA27AY.450.000243
ORF1ab/nsp6280G280GggCggT77B.1.177.570.001967
ORF1ab/nsp6280G280GggCggA56AY.39.10.000198
ORF1ab/nsp6280G280GggCggT16AY.39.10.00004
ORF1ab/nsp6280G280GggCggT46B.1.5260.000094
ORF1ab/nsp6280G280GggCggA26B.1.5260.000047
ORF1ab/nsp6280G280GggCggA46D.20.0003
ORF1ab/nsp6280G280GggCggT26D.20.00015
ORF1ab/nsp6280G280GggCggA66Q.80.000989
ORF1ab/nsp6280G280GggCggA55AY.23.10.002087
ORF1ab/nsp6280G280GggCggA55AY.4.20.000108
ORF1ab/nsp6280G280GggCggA55AY.560.008026
ORF1ab/nsp6280G280GggCggT45B.1.1.5190.000159
ORF1ab/nsp6280G280GggCggA15B.1.1.5190.00004
ORF1ab/nsp6280G280GggCggT55B.1.5760.004533
ORF1ab/nsp6280G280GggCggA44AY.1000.000184
ORF1ab/nsp6280G280GggCggA34AY.50.000062
ORF1ab/nsp6280G280GggCggT14AY.50.000021
ORF1ab/nsp6280G280GggCggA44AY.9.20.000147
ORF1ab/nsp6280G280GggCggT44B.1.36.380.006568
ORF1ab/nsp6280G280GggCggA44P.50.054795
ORF1ab/nsp6280G280GggCggT23AY.260.000057
ORF1ab/nsp6280G280GggCggA13AY.260.000028
ORF1ab/nsp6280G280GggCggT33AY.3.10.000256
ORF1ab/nsp6280G280GggCggA23AY.460.000208
ORF1ab/nsp6280G280GggCggT13AY.460.000104
ORF1ab/nsp6280G280GggCggA33AY.5.30.001012
ORF1ab/nsp6280G280GggCggA23AY.99.20.000184
ORF1ab/nsp6280G280GggCggT13AY.99.20.000092
ORF1ab/nsp6280G280GggCggA23B0.000256
ORF1ab/nsp6280G280GggCggT13B0.000128
ORF1ab/nsp6280G280GggCggA33B.1.1.3890.018182
ORF1ab/nsp6280G280GggCggT33B.1.177.600.000655
ORF1ab/nsp6280G280GggCggA33B.1.351.50.001799
ORF1ab/nsp6280G280GggCggA23B.1.360.000292
ORF1ab/nsp6280G280GggCggT13B.1.360.000146
ORF1ab/nsp6280G280GggCggA33B.1.6200.002838
ORF1ab/nsp6280G280GggCggT22AY.1040.003968
ORF1ab/nsp6280G280GggCggA12AY.1130.000142
ORF1ab/nsp6280G280GggCggT12AY.1130.000142
ORF1ab/nsp6280G280GggCggT12AY.230.00007
ORF1ab/nsp6280G280GggCggA12AY.230.00007
ORF1ab/nsp6280G280GggCggT22AY.330.000134
ORF1ab/nsp6280G280GggCggA22AY.470.000062
ORF1ab/nsp6280G280GggCggA12AY.540.000095
ORF1ab/nsp6280G280GggCggT12AY.540.000095
ORF1ab/nsp6280G280GggCggA12AY.610.000105
ORF1ab/nsp6280G280GggCggT12AY.610.000105
ORF1ab/nsp6280G280GggCggT22AY.70.000392
ORF1ab/nsp6280G280GggCggT22AY.700.000417
ORF1ab/nsp6280G280GggCggA22AY.730.001331
ORF1ab/nsp6280G280GggCggT22B.1.1.10.000653
ORF1ab/nsp6280G280GggCggA22B.1.1.2220.000408
ORF1ab/nsp6280G280GggCggA12B.1.1.280.000311
ORF1ab/nsp6280G280GggCggT12B.1.1.280.000311
ORF1ab/nsp6280G280GggCggA22B.1.1.390.001019
ORF1ab/nsp6280G280GggCggA22B.1.1.4420.037037
ORF1ab/nsp6280G280GggCggA22B.1.1.5070.017391
ORF1ab/nsp6280G280GggCggA22B.1.2210.000142
ORF1ab/nsp6280G280GggCggT12B.1.36.290.000517
ORF1ab/nsp6280G280GggCggA12B.1.36.290.000517
ORF1ab/nsp6280G280GggCggA22B.1.36.80.002
ORF1ab/nsp6280G280GggCggA22B.1.3690.00057
ORF1ab/nsp6280G280GggCggA22B.1.5950.000522
ORF1ab/nsp6280G280GggCggA12B.1.5960.000087
ORF1ab/nsp6280G280GggCggT12B.1.5960.000087
ORF1ab/nsp6280G280GggCggA22B.390.004662
ORF1ab/nsp6280G280GggCggT22N.60.014184
ORF1ab/nsp6280G280GggCggA11A0.000387
ORF1ab/nsp6280G280GggCggT11AM.40.003571
ORF1ab/nsp6280G280GggCggA11AY.116.10.000311
ORF1ab/nsp6280G280GggCggA11AY.1200.000037
ORF1ab/nsp6280G280GggCggA11AY.120.20.001285
ORF1ab/nsp6280G280GggCggA11AY.120.2.10.000498
ORF1ab/nsp6280G280GggCggA11AY.1210.000135
ORF1ab/nsp6280G280GggCggA11AY.130.000161
ORF1ab/nsp6280G280GggCggT11AY.160.00038
ORF1ab/nsp6280G280GggCggA11AY.270.000065
ORF1ab/nsp6280G280GggCggT11AY.300.000396
ORF1ab/nsp6280G280GggCggA11AY.360.000148
ORF1ab/nsp6280G280GggCggT11AY.420.00004
ORF1ab/nsp6280G280GggCggA11AY.520.000814
ORF1ab/nsp6280G280GggCggA11AY.640.000595
ORF1ab/nsp6280G280GggCggA11AY.7.10.000113
ORF1ab/nsp6280G280GggCggT11AY.710.000475
ORF1ab/nsp6280G280GggCggA11AY.860.00083
ORF1ab/nsp6280G280GggCggA11AY.98.10.000048
ORF1ab/nsp6280G280GggCggT11B.1.1.1640.005155
ORF1ab/nsp6280G280GggCggT11B.1.1.1700.001247
ORF1ab/nsp6280G280GggCggA11B.1.1.1860.003436
ORF1ab/nsp6280G280GggCggT11B.1.1.250.000569
ORF1ab/nsp6280G280GggCggA11B.1.1.2790.001121
ORF1ab/nsp6280G280GggCggA11B.1.1.2820.011628
ORF1ab/nsp6280G280GggCggA11B.1.1.3060.000438
ORF1ab/nsp6280G280GggCggA11B.1.1.3290.003846
ORF1ab/nsp6280G280GggCggA11B.1.1.4320.001266
ORF1ab/nsp6280G280GggCggA11B.1.1.4330.001425
ORF1ab/nsp6280G280GggCggA11B.1.1.630.000386
ORF1ab/nsp6280G280GggCggA11B.1.1040.00369
ORF1ab/nsp6280G280GggCggA11B.1.1280.000635
ORF1ab/nsp6280G280GggCggA11B.1.1700.00431
ORF1ab/nsp6280G280GggCggT11B.1.177.160.000664
ORF1ab/nsp6280G280GggCggA11B.1.177.330.001645
ORF1ab/nsp6280G280GggCggA11B.1.177.440.000519
ORF1ab/nsp6280G280GggCggT11B.1.177.650.000665
ORF1ab/nsp6280G280GggCggT11B.1.177.700.005917
ORF1ab/nsp6280G280GggCggA11B.1.177.770.000726
ORF1ab/nsp6280G280GggCggT11B.1.177.820.000477
ORF1ab/nsp6280G280GggCggA11B.1.177.860.000183
ORF1ab/nsp6280G280GggCggT11B.1.2030.0625
ORF1ab/nsp6280G280GggCggT11B.1.2240.025
ORF1ab/nsp6280G280GggCggA11B.1.2340.000132
ORF1ab/nsp6280G280GggCggT11B.1.2400.000216
ORF1ab/nsp6280G280GggCggT11B.1.258.110.000396
ORF1ab/nsp6280G280GggCggA11B.1.258.170.000104
ORF1ab/nsp6280G280GggCggA11B.1.351.20.000303
ORF1ab/nsp6280G280GggCggA11B.1.36.70.004
ORF1ab/nsp6280G280GggCggA11B.1.3670.000792
ORF1ab/nsp6280G280GggCggA11B.1.4270.00005
ORF1ab/nsp6280G280GggCggT11B.1.4590.004082
ORF1ab/nsp6280G280GggCggA11B.1.5160.001957
ORF1ab/nsp6280G280GggCggA11B.1.5240.001406
ORF1ab/nsp6280G280GggCggT11B.1.5250.000113
ORF1ab/nsp6280G280GggCggA11B.1.5440.006024
ORF1ab/nsp6280G280GggCggT11B.1.5600.00463
ORF1ab/nsp6280G280GggCggT11B.1.5610.000397
ORF1ab/nsp6280G280GggCggT11B.1.5750.000303
ORF1ab/nsp6280G280GggCggT11B.1.619.10.000641
ORF1ab/nsp6280G280GggCggA11B.1.6210.000089
ORF1ab/nsp6280G280GggCggT11B.1.621.10.000506
ORF1ab/nsp6280G280GggCggA11B.1.930.000934
ORF1ab/nsp6280G280GggCggA11B.550.00295
ORF1ab/nsp6280G280GggCggA11C.350.000774
ORF1ab/nsp6280G280GggCggT11C.36.30.000567
ORF1ab/nsp6280G280GggCggT11C.370.000116
ORF1ab/nsp6280G280GggCggT11N.30.005814
ORF1ab/nsp6280G280GggCggT11P.1.140.000048
ORF1ab/nsp6280G280GggCggA11P.1.70.000319
ORF1ab/nsp6280G280GggCggA11Q.10.000126
ORF1ab/nsp6280G280GggCggA11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.