CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = F201F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6201F201FF3770FsynttCttT1677016770111573-11575

Details of the mutation F201F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6201F201FttCttT1677016770All0.003207
ORF1ab/nsp6201F201FttCttT1011910119B.1.1.70.009059
ORF1ab/nsp6201F201FttCttT12061206B.1.2410.978896
ORF1ab/nsp6201F201FttCttT573573B.1.3510.017033
ORF1ab/nsp6201F201FttCttT382382AY.40.000595
ORF1ab/nsp6201F201FttCttT263263B.1.5670.876667
ORF1ab/nsp6201F201FttCttT251251AY.430.001112
ORF1ab/nsp6201F201FttCttT245245AY.250.001474
ORF1ab/nsp6201F201FttCttT244244B.1.1.5190.009689
ORF1ab/nsp6201F201FttCttT229229B.1.4040.298177
ORF1ab/nsp6201F201FttCttT213213B.1.1770.002805
ORF1ab/nsp6201F201FttCttT173173B.1.2430.012038
ORF1ab/nsp6201F201FttCttT166166B.1.20.001462
ORF1ab/nsp6201F201FttCttT159159B.1.617.20.000599
ORF1ab/nsp6201F201FttCttT154154B.1.5260.00362
ORF1ab/nsp6201F201FttCttT144144P.10.002269
ORF1ab/nsp6201F201FttCttT137137B.10.001255
ORF1ab/nsp6201F201FttCttT120120AY.30.001194
ORF1ab/nsp6201F201FttCttT119119B.1.6320.798658
ORF1ab/nsp6201F201FttCttT105105B.1.5580.479452
ORF1ab/nsp6201F201FttCttT9595AY.3.10.0081
ORF1ab/nsp6201F201FttCttT9494AY.1030.000584
ORF1ab/nsp6201F201FttCttT9292AY.9.20.003379
ORF1ab/nsp6201F201FttCttT8787AY.440.00053
ORF1ab/nsp6201F201FttCttT6868B.1.2580.004525
ORF1ab/nsp6201F201FttCttT5959AY.420.002374
ORF1ab/nsp6201F201FttCttT5757B.1.2650.072427
ORF1ab/nsp6201F201FttCttT4747Q.80.007751
ORF1ab/nsp6201F201FttCttT4646B.1.160.160.042751
ORF1ab/nsp6201F201FttCttT4444AY.610.00461
ORF1ab/nsp6201F201FttCttT4141B.1.10.000744
ORF1ab/nsp6201F201FttCttT3636B.1.4290.000847
ORF1ab/nsp6201F201FttCttT3535AY.340.003394
ORF1ab/nsp6201F201FttCttT2929AY.98.10.001404
ORF1ab/nsp6201F201FttCttT2828AY.260.000793
ORF1ab/nsp6201F201FttCttT2828B.1.2400.006036
ORF1ab/nsp6201F201FttCttT2525AY.390.000618
ORF1ab/nsp6201F201FttCttT2323B.1.1600.000717
ORF1ab/nsp6201F201FttCttT2121B.1.5960.00183
ORF1ab/nsp6201F201FttCttT1818AY.200.0007
ORF1ab/nsp6201F201FttCttT1818AY.290.000284
ORF1ab/nsp6201F201FttCttT1818B.1.1.2970.040268
ORF1ab/nsp6201F201FttCttT1818C.370.002089
ORF1ab/nsp6201F201FttCttT1717P.30.027113
ORF1ab/nsp6201F201FttCttT1616AY.50.00033
ORF1ab/nsp6201F201FttCttT1515B0.001917
ORF1ab/nsp6201F201FttCttT1515B.1.1.3010.017689
ORF1ab/nsp6201F201FttCttT1414AY.1190.000494
ORF1ab/nsp6201F201FttCttT1414AY.4.20.000304
ORF1ab/nsp6201F201FttCttT1414B.1.1.1700.017456
ORF1ab/nsp6201F201FttCttT1414B.1.1.280.004357
ORF1ab/nsp6201F201FttCttT1313AY.1020.000345
ORF1ab/nsp6201F201FttCttT1313AY.120.004109
ORF1ab/nsp6201F201FttCttT1313B.1.2210.000923
ORF1ab/nsp6201F201FttCttT1313B.1.5950.003392
ORF1ab/nsp6201F201FttCttT1313R.10.00117
ORF1ab/nsp6201F201FttCttT1212AY.230.000837
ORF1ab/nsp6201F201FttCttT1111AY.540.001049
ORF1ab/nsp6201F201FttCttT1111AY.99.20.001014
ORF1ab/nsp6201F201FttCttT1010AY.1200.000372
ORF1ab/nsp6201F201FttCttT1010AY.1210.001353
ORF1ab/nsp6201F201FttCttT1010AY.130.00161
ORF1ab/nsp6201F201FttCttT1010AY.330.000668
ORF1ab/nsp6201F201FttCttT1010AY.980.00079
ORF1ab/nsp6201F201FttCttT1010B.1.1.3160.009251
ORF1ab/nsp6201F201FttCttT1010B.1.36.190.092593
ORF1ab/nsp6201F201FttCttT99B.1.4270.000454
ORF1ab/nsp6201F201FttCttT99B.1.5230.022059
ORF1ab/nsp6201F201FttCttT99L.30.031915
ORF1ab/nsp6201F201FttCttT88AY.470.000249
ORF1ab/nsp6201F201FttCttT88AY.910.005844
ORF1ab/nsp6201F201FttCttT88B.1.1.2140.000444
ORF1ab/nsp6201F201FttCttT88B.1.6230.004292
ORF1ab/nsp6201F201FttCttT88B.1.6370.000585
ORF1ab/nsp6201F201FttCttT77A0.002709
ORF1ab/nsp6201F201FttCttT77AY.39.10.000277
ORF1ab/nsp6201F201FttCttT77AY.750.000392
ORF1ab/nsp6201F201FttCttT77B.1.1.3170.002882
ORF1ab/nsp6201F201FttCttT77B.1.258.170.000728
ORF1ab/nsp6201F201FttCttT77B.1.5240.009845
ORF1ab/nsp6201F201FttCttT77B.1.621.10.003541
ORF1ab/nsp6201F201FttCttT660.333333
ORF1ab/nsp6201F201FttCttT66AY.1140.001387
ORF1ab/nsp6201F201FttCttT66AY.450.00073
ORF1ab/nsp6201F201FttCttT66AY.90.000406
ORF1ab/nsp6201F201FttCttT66B.1.1.3260.010563
ORF1ab/nsp6201F201FttCttT66B.1.3550.066667
ORF1ab/nsp6201F201FttCttT66B.1.360.000875
ORF1ab/nsp6201F201FttCttT66B.1.466.20.002347
ORF1ab/nsp6201F201FttCttT66Q.40.002729
ORF1ab/nsp6201F201FttCttT55AY.1010.002452
ORF1ab/nsp6201F201FttCttT55AY.1170.000423
ORF1ab/nsp6201F201FttCttT55AY.4.40.002046
ORF1ab/nsp6201F201FttCttT55AY.60.000206
ORF1ab/nsp6201F201FttCttT55AY.720.006803
ORF1ab/nsp6201F201FttCttT55B.1.1.4330.007123
ORF1ab/nsp6201F201FttCttT55B.1.177.690.007418
ORF1ab/nsp6201F201FttCttT55B.1.6210.000443
ORF1ab/nsp6201F201FttCttT55P.1.100.001347
ORF1ab/nsp6201F201FttCttT55P.1.140.000239
ORF1ab/nsp6201F201FttCttT44AY.1000.000184
ORF1ab/nsp6201F201FttCttT44AY.1180.000251
ORF1ab/nsp6201F201FttCttT44AY.300.001583
ORF1ab/nsp6201F201FttCttT44AY.46.40.000658
ORF1ab/nsp6201F201FttCttT44AY.75.10.000721
ORF1ab/nsp6201F201FttCttT44B.1.1.2160.003562
ORF1ab/nsp6201F201FttCttT44B.1.1.2220.000816
ORF1ab/nsp6201F201FttCttT44B.1.1.330.001684
ORF1ab/nsp6201F201FttCttT44B.1.1.4340.001394
ORF1ab/nsp6201F201FttCttT44B.1.1430.085106
ORF1ab/nsp6201F201FttCttT44B.1.4000.001716
ORF1ab/nsp6201F201FttCttT33A.20.001985
ORF1ab/nsp6201F201FttCttT33AY.10.001187
ORF1ab/nsp6201F201FttCttT33AY.1050.001929
ORF1ab/nsp6201F201FttCttT33AY.1130.000427
ORF1ab/nsp6201F201FttCttT33AY.1160.00086
ORF1ab/nsp6201F201FttCttT33AY.190.003421
ORF1ab/nsp6201F201FttCttT33AY.23.10.001252
ORF1ab/nsp6201F201FttCttT33AY.620.001307
ORF1ab/nsp6201F201FttCttT33AY.740.000347
ORF1ab/nsp6201F201FttCttT33B.1.1.1740.010135
ORF1ab/nsp6201F201FttCttT33B.1.1.2070.003546
ORF1ab/nsp6201F201FttCttT33B.1.1.3060.001315
ORF1ab/nsp6201F201FttCttT33B.1.177.650.001996
ORF1ab/nsp6201F201FttCttT33B.1.177.810.000568
ORF1ab/nsp6201F201FttCttT33B.1.3750.002459
ORF1ab/nsp6201F201FttCttT33B.1.4260.003027
ORF1ab/nsp6201F201FttCttT33B.1.5750.00091
ORF1ab/nsp6201F201FttCttT33B.1.617.10.000387
ORF1ab/nsp6201F201FttCttT33P.1.150.000697
ORF1ab/nsp6201F201FttCttT22AY.380.000999
ORF1ab/nsp6201F201FttCttT22AY.4.50.000215
ORF1ab/nsp6201F201FttCttT22AY.400.001929
ORF1ab/nsp6201F201FttCttT22AY.460.000208
ORF1ab/nsp6201F201FttCttT22AY.650.001066
ORF1ab/nsp6201F201FttCttT22AY.690.000373
ORF1ab/nsp6201F201FttCttT22AY.930.000546
ORF1ab/nsp6201F201FttCttT22B.1.1.1760.000879
ORF1ab/nsp6201F201FttCttT22B.1.1.250.001137
ORF1ab/nsp6201F201FttCttT22B.1.1.3480.001592
ORF1ab/nsp6201F201FttCttT22B.1.1.370.000386
ORF1ab/nsp6201F201FttCttT22B.1.1.40.005952
ORF1ab/nsp6201F201FttCttT22B.1.1460.008475
ORF1ab/nsp6201F201FttCttT22B.1.2340.000264
ORF1ab/nsp6201F201FttCttT22B.1.3150.012121
ORF1ab/nsp6201F201FttCttT22B.1.3490.00143
ORF1ab/nsp6201F201FttCttT22B.1.36.10.002281
ORF1ab/nsp6201F201FttCttT22B.1.36.290.001035
ORF1ab/nsp6201F201FttCttT22B.1.4160.002538
ORF1ab/nsp6201F201FttCttT22B.1.5110.068966
ORF1ab/nsp6201F201FttCttT22B.1.6190.001742
ORF1ab/nsp6201F201FttCttT22P.1.170.000324
ORF1ab/nsp6201F201FttCttT22P.1.20.002312
ORF1ab/nsp6201F201FttCttT22Q.10.000253
ORF1ab/nsp6201F201FttCttT11A.2.5.20.001572
ORF1ab/nsp6201F201FttCttT11AE.20.058824
ORF1ab/nsp6201F201FttCttT11AE.50.018519
ORF1ab/nsp6201F201FttCttT11AY.1060.000335
ORF1ab/nsp6201F201FttCttT11AY.1070.000466
ORF1ab/nsp6201F201FttCttT11AY.1080.001103
ORF1ab/nsp6201F201FttCttT11AY.160.00038
ORF1ab/nsp6201F201FttCttT11AY.210.001898
ORF1ab/nsp6201F201FttCttT11AY.34.10.00051
ORF1ab/nsp6201F201FttCttT11AY.360.000148
ORF1ab/nsp6201F201FttCttT11AY.46.50.000198
ORF1ab/nsp6201F201FttCttT11AY.46.60.000072
ORF1ab/nsp6201F201FttCttT11AY.590.00053
ORF1ab/nsp6201F201FttCttT11AY.680.000274
ORF1ab/nsp6201F201FttCttT11AY.70.000196
ORF1ab/nsp6201F201FttCttT11AY.710.000475
ORF1ab/nsp6201F201FttCttT11AY.840.000437
ORF1ab/nsp6201F201FttCttT11AY.860.00083
ORF1ab/nsp6201F201FttCttT11AY.870.000833
ORF1ab/nsp6201F201FttCttT11AY.9.10.000084
ORF1ab/nsp6201F201FttCttT11AY.900.000684
ORF1ab/nsp6201F201FttCttT11AY.920.000287
ORF1ab/nsp6201F201FttCttT11AY.990.001049
ORF1ab/nsp6201F201FttCttT11AZ.40.003356
ORF1ab/nsp6201F201FttCttT11B.1.1.1170.009709
ORF1ab/nsp6201F201FttCttT11B.1.1.1610.003534
ORF1ab/nsp6201F201FttCttT11B.1.1.1640.005155
ORF1ab/nsp6201F201FttCttT11B.1.1.2310.003096
ORF1ab/nsp6201F201FttCttT11B.1.1.2530.002506
ORF1ab/nsp6201F201FttCttT11B.1.1.2630.001558
ORF1ab/nsp6201F201FttCttT11B.1.1.2660.012195
ORF1ab/nsp6201F201FttCttT11B.1.1.2800.003086
ORF1ab/nsp6201F201FttCttT11B.1.1.2890.002083
ORF1ab/nsp6201F201FttCttT11B.1.1.3070.002532
ORF1ab/nsp6201F201FttCttT11B.1.1.3110.000358
ORF1ab/nsp6201F201FttCttT11B.1.1.3120.001912
ORF1ab/nsp6201F201FttCttT11B.1.1.3720.000689
ORF1ab/nsp6201F201FttCttT11B.1.1.3970.002252
ORF1ab/nsp6201F201FttCttT11B.1.1.4160.000905
ORF1ab/nsp6201F201FttCttT11B.1.1.4200.001006
ORF1ab/nsp6201F201FttCttT11B.1.1.4640.001473
ORF1ab/nsp6201F201FttCttT11B.1.1.5150.02
ORF1ab/nsp6201F201FttCttT11B.1.1.630.000386
ORF1ab/nsp6201F201FttCttT11B.1.1.700.000341
ORF1ab/nsp6201F201FttCttT11B.1.1.890.006061
ORF1ab/nsp6201F201FttCttT11B.1.1390.000733
ORF1ab/nsp6201F201FttCttT11B.1.1570.002985
ORF1ab/nsp6201F201FttCttT11B.1.177.120.000152
ORF1ab/nsp6201F201FttCttT11B.1.177.310.011494
ORF1ab/nsp6201F201FttCttT11B.1.177.570.000281
ORF1ab/nsp6201F201FttCttT11B.1.177.620.001192
ORF1ab/nsp6201F201FttCttT11B.1.177.680.015152
ORF1ab/nsp6201F201FttCttT11B.1.177.70.000165
ORF1ab/nsp6201F201FttCttT11B.1.2060.000816
ORF1ab/nsp6201F201FttCttT11B.1.2220.001692
ORF1ab/nsp6201F201FttCttT11B.1.3110.000275
ORF1ab/nsp6201F201FttCttT11B.1.3240.001605
ORF1ab/nsp6201F201FttCttT11B.1.351.20.000303
ORF1ab/nsp6201F201FttCttT11B.1.351.30.000876
ORF1ab/nsp6201F201FttCttT11B.1.3610.001289
ORF1ab/nsp6201F201FttCttT11B.1.3690.000285
ORF1ab/nsp6201F201FttCttT11B.1.4700.001404
ORF1ab/nsp6201F201FttCttT11B.1.5250.000113
ORF1ab/nsp6201F201FttCttT11B.1.5480.035714
ORF1ab/nsp6201F201FttCttT11B.1.5640.000426
ORF1ab/nsp6201F201FttCttT11B.1.5650.00081
ORF1ab/nsp6201F201FttCttT11B.1.5730.006098
ORF1ab/nsp6201F201FttCttT11B.1.5810.009434
ORF1ab/nsp6201F201FttCttT11B.1.6020.006536
ORF1ab/nsp6201F201FttCttT11B.1.6090.000479
ORF1ab/nsp6201F201FttCttT11B.1.619.10.000641
ORF1ab/nsp6201F201FttCttT11B.1.6200.000946
ORF1ab/nsp6201F201FttCttT11B.200.023256
ORF1ab/nsp6201F201FttCttT11B.260.014706
ORF1ab/nsp6201F201FttCttT11B.40.002208
ORF1ab/nsp6201F201FttCttT11C.230.005814
ORF1ab/nsp6201F201FttCttT11C.360.000911
ORF1ab/nsp6201F201FttCttT11D.20.000075
ORF1ab/nsp6201F201FttCttT11N.50.001767
ORF1ab/nsp6201F201FttCttT11P.1.10.000318
ORF1ab/nsp6201F201FttCttT11P.1.160.000374
ORF1ab/nsp6201F201FttCttT11P.20.000187
ORF1ab/nsp6201F201FttCttT11P.60.003145
ORF1ab/nsp6201F201FttCttT11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.