CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = F200F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6200F200FF3769FsynttCttT2140621406111570-11572

Details of the mutation F200F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6200F200FttCttT2140621406All0.004094
ORF1ab/nsp6200F200FttCttT1149411494AY.1030.071367
ORF1ab/nsp6200F200FttCttT34463446B.1.1.70.003085
ORF1ab/nsp6200F200FttCttT14801480B.1.20.013032
ORF1ab/nsp6200F200FttCttT711711AY.40.001107
ORF1ab/nsp6200F200FttCttT586586B.1.617.20.002207
ORF1ab/nsp6200F200FttCttT245245B.1.10.004445
ORF1ab/nsp6200F200FttCttT212212P.1.140.010134
ORF1ab/nsp6200F200FttCttT177177AY.250.001065
ORF1ab/nsp6200F200FttCttT175175AY.440.001065
ORF1ab/nsp6200F200FttCttT173173B.1.36.280.994253
ORF1ab/nsp6200F200FttCttT154154B.1.177.820.073508
ORF1ab/nsp6200F200FttCttT109109B.1.214.40.990909
ORF1ab/nsp6200F200FttCttT106106B.1.4270.005353
ORF1ab/nsp6200F200FttCttT9797AY.430.00043
ORF1ab/nsp6200F200FttCttT9191B.1.1770.001198
ORF1ab/nsp6200F200FttCttT8787AY.330.00581
ORF1ab/nsp6200F200FttCttT8383B.10.00076
ORF1ab/nsp6200F200FttCttT8383B.1.5260.001951
ORF1ab/nsp6200F200FttCttT7979AY.30.000786
ORF1ab/nsp6200F200FttCttT6565P.10.001024
ORF1ab/nsp6200F200FttCttT6262AY.260.001755
ORF1ab/nsp6200F200FttCttT5858B.1.4290.001365
ORF1ab/nsp6200F200FttCttT5757Q.80.0094
ORF1ab/nsp6200F200FttCttT5656B.1.3510.001665
ORF1ab/nsp6200F200FttCttT5252AY.39.20.080123
ORF1ab/nsp6200F200FttCttT4747AY.1200.001747
ORF1ab/nsp6200F200FttCttT4747B.1.5650.038088
ORF1ab/nsp6200F200FttCttT4747B.1.6370.003434
ORF1ab/nsp6200F200FttCttT4646B.1.1600.001435
ORF1ab/nsp6200F200FttCttT4545AY.4.20.000976
ORF1ab/nsp6200F200FttCttT4141AY.390.001013
ORF1ab/nsp6200F200FttCttT3737B.1.5700.108824
ORF1ab/nsp6200F200FttCttT3636AY.290.000568
ORF1ab/nsp6200F200FttCttT3333B.1.1.5190.00131
ORF1ab/nsp6200F200FttCttT3232B.1.1.1590.149533
ORF1ab/nsp6200F200FttCttT3232B.1.177.210.002447
ORF1ab/nsp6200F200FttCttT2626B.1.2580.00173
ORF1ab/nsp6200F200FttCttT2424B.1.4990.02521
ORF1ab/nsp6200F200FttCttT2323B.1.5960.002004
ORF1ab/nsp6200F200FttCttT2222AY.1020.000583
ORF1ab/nsp6200F200FttCttT2121A0.008127
ORF1ab/nsp6200F200FttCttT2121B.1.1.3480.01672
ORF1ab/nsp6200F200FttCttT2121B.1.930.019608
ORF1ab/nsp6200F200FttCttT2020AY.1180.001253
ORF1ab/nsp6200F200FttCttT1717B.1.1.2140.000943
ORF1ab/nsp6200F200FttCttT1616B.1.1.3330.017223
ORF1ab/nsp6200F200FttCttT1515AY.340.001454
ORF1ab/nsp6200F200FttCttT1515AY.50.00031
ORF1ab/nsp6200F200FttCttT1515B.1.2220.025381
ORF1ab/nsp6200F200FttCttT1414AY.1000.000644
ORF1ab/nsp6200F200FttCttT1414B.1.2430.000974
ORF1ab/nsp6200F200FttCttT1313AY.590.006886
ORF1ab/nsp6200F200FttCttT1313B.1.1.2220.002652
ORF1ab/nsp6200F200FttCttT1313B.1.360.001897
ORF1ab/nsp6200F200FttCttT1313B.1.6230.006974
ORF1ab/nsp6200F200FttCttT1212AY.300.004749
ORF1ab/nsp6200F200FttCttT1111AY.420.000443
ORF1ab/nsp6200F200FttCttT1111AY.650.005864
ORF1ab/nsp6200F200FttCttT1111AY.750.000616
ORF1ab/nsp6200F200FttCttT1111B.1.1.2940.013924
ORF1ab/nsp6200F200FttCttT1111B.1.177.160.007309
ORF1ab/nsp6200F200FttCttT1111B.1.3770.050228
ORF1ab/nsp6200F200FttCttT1111B.1.6210.000974
ORF1ab/nsp6200F200FttCttT1010AY.1190.000353
ORF1ab/nsp6200F200FttCttT1010AY.200.000389
ORF1ab/nsp6200F200FttCttT1010B.1.1.10.003267
ORF1ab/nsp6200F200FttCttT1010B.1.5250.001132
ORF1ab/nsp6200F200FttCttT99AY.950.006849
ORF1ab/nsp6200F200FttCttT99B.1.1.3180.002716
ORF1ab/nsp6200F200FttCttT99B.1.5270.033333
ORF1ab/nsp6200F200FttCttT99B.1.617.10.001161
ORF1ab/nsp6200F200FttCttT88AY.3.10.000682
ORF1ab/nsp6200F200FttCttT88AY.39.10.000317
ORF1ab/nsp6200F200FttCttT88AY.470.000249
ORF1ab/nsp6200F200FttCttT88B.1.1490.027397
ORF1ab/nsp6200F200FttCttT77AY.4.50.000752
ORF1ab/nsp6200F200FttCttT77AY.540.000667
ORF1ab/nsp6200F200FttCttT77AY.550.006422
ORF1ab/nsp6200F200FttCttT77AY.9.10.000586
ORF1ab/nsp6200F200FttCttT77B.1.438.10.000751
ORF1ab/nsp6200F200FttCttT77B.1.5610.002779
ORF1ab/nsp6200F200FttCttT77P.1.70.002235
ORF1ab/nsp6200F200FttCttT77P.20.001306
ORF1ab/nsp6200F200FttCttT77R.10.00063
ORF1ab/nsp6200F200FttCttT66A.280.015873
ORF1ab/nsp6200F200FttCttT66AY.450.00073
ORF1ab/nsp6200F200FttCttT66B.1.177.860.001101
ORF1ab/nsp6200F200FttCttT66C.2.10.04
ORF1ab/nsp6200F200FttCttT66C.36.30.003403
ORF1ab/nsp6200F200FttCttT66C.370.000696
ORF1ab/nsp6200F200FttCttT55AY.130.000805
ORF1ab/nsp6200F200FttCttT55AY.230.000349
ORF1ab/nsp6200F200FttCttT55AY.46.50.000992
ORF1ab/nsp6200F200FttCttT55AY.46.60.000361
ORF1ab/nsp6200F200FttCttT55AY.730.003327
ORF1ab/nsp6200F200FttCttT55AY.9.20.000184
ORF1ab/nsp6200F200FttCttT55AY.98.10.000242
ORF1ab/nsp6200F200FttCttT55B.1.1.2840.000537
ORF1ab/nsp6200F200FttCttT55B.1.1.330.002104
ORF1ab/nsp6200F200FttCttT55B.1.177.70.000824
ORF1ab/nsp6200F200FttCttT55B.1.177.810.000947
ORF1ab/nsp6200F200FttCttT55B.1.2060.004078
ORF1ab/nsp6200F200FttCttT55B.1.2210.000355
ORF1ab/nsp6200F200FttCttT55B.1.3060.028571
ORF1ab/nsp6200F200FttCttT55B.1.5240.007032
ORF1ab/nsp6200F200FttCttT55C.110.053191
ORF1ab/nsp6200F200FttCttT440.222222
ORF1ab/nsp6200F200FttCttT44AY.360.000593
ORF1ab/nsp6200F200FttCttT44AY.4.2.10.000596
ORF1ab/nsp6200F200FttCttT44AY.610.000419
ORF1ab/nsp6200F200FttCttT44AY.840.00175
ORF1ab/nsp6200F200FttCttT44B.1.1.280.001245
ORF1ab/nsp6200F200FttCttT44B.1.1.2910.00297
ORF1ab/nsp6200F200FttCttT44B.1.2100.008529
ORF1ab/nsp6200F200FttCttT44B.1.2400.000862
ORF1ab/nsp6200F200FttCttT44B.1.3240.006421
ORF1ab/nsp6200F200FttCttT44B.1.3690.001141
ORF1ab/nsp6200F200FttCttT44B.1.4000.001716
ORF1ab/nsp6200F200FttCttT44B.1.5750.001214
ORF1ab/nsp6200F200FttCttT33AY.1210.000406
ORF1ab/nsp6200F200FttCttT33AY.29.10.000662
ORF1ab/nsp6200F200FttCttT33AY.460.000312
ORF1ab/nsp6200F200FttCttT33AY.680.000821
ORF1ab/nsp6200F200FttCttT33AY.75.10.000541
ORF1ab/nsp6200F200FttCttT33AY.90.000203
ORF1ab/nsp6200F200FttCttT33AY.910.002191
ORF1ab/nsp6200F200FttCttT33AY.920.000862
ORF1ab/nsp6200F200FttCttT33AY.980.000237
ORF1ab/nsp6200F200FttCttT33B.1.1.1450.111111
ORF1ab/nsp6200F200FttCttT33B.1.1.250.001706
ORF1ab/nsp6200F200FttCttT33B.1.1.2630.004673
ORF1ab/nsp6200F200FttCttT33B.1.1.3390.031579
ORF1ab/nsp6200F200FttCttT33B.1.1.700.001023
ORF1ab/nsp6200F200FttCttT33B.1.177.600.000655
ORF1ab/nsp6200F200FttCttT33B.1.2360.00616
ORF1ab/nsp6200F200FttCttT33B.1.2410.002435
ORF1ab/nsp6200F200FttCttT33B.1.4080.01107
ORF1ab/nsp6200F200FttCttT33B.1.4970.000944
ORF1ab/nsp6200F200FttCttT33B.1.5640.001278
ORF1ab/nsp6200F200FttCttT33B.1.5820.001472
ORF1ab/nsp6200F200FttCttT33B.1.6200.002838
ORF1ab/nsp6200F200FttCttT33B.60.00273
ORF1ab/nsp6200F200FttCttT33P.1.150.000697
ORF1ab/nsp6200F200FttCttT33P.60.009434
ORF1ab/nsp6200F200FttCttT33Q.10.000379
ORF1ab/nsp6200F200FttCttT22A.23.10.001408
ORF1ab/nsp6200F200FttCttT22AY.1130.000285
ORF1ab/nsp6200F200FttCttT22AY.1170.000169
ORF1ab/nsp6200F200FttCttT22AY.190.002281
ORF1ab/nsp6200F200FttCttT22AY.23.10.000835
ORF1ab/nsp6200F200FttCttT22AY.46.40.000329
ORF1ab/nsp6200F200FttCttT22AY.60.000082
ORF1ab/nsp6200F200FttCttT22AY.70.000392
ORF1ab/nsp6200F200FttCttT22AY.7.10.000225
ORF1ab/nsp6200F200FttCttT22AY.870.001665
ORF1ab/nsp6200F200FttCttT22B0.000256
ORF1ab/nsp6200F200FttCttT22B.1.1.1740.006757
ORF1ab/nsp6200F200FttCttT22B.1.1.2160.001781
ORF1ab/nsp6200F200FttCttT22B.1.1.2340.024096
ORF1ab/nsp6200F200FttCttT22B.1.1.3160.00185
ORF1ab/nsp6200F200FttCttT22B.1.1.3170.000823
ORF1ab/nsp6200F200FttCttT22B.1.1.3290.007692
ORF1ab/nsp6200F200FttCttT22B.1.1.3980.006452
ORF1ab/nsp6200F200FttCttT22B.1.1.4090.005666
ORF1ab/nsp6200F200FttCttT22B.1.1.510.003436
ORF1ab/nsp6200F200FttCttT22B.1.1.630.000772
ORF1ab/nsp6200F200FttCttT22B.1.1390.001466
ORF1ab/nsp6200F200FttCttT22B.1.177.520.003515
ORF1ab/nsp6200F200FttCttT22B.1.2340.000264
ORF1ab/nsp6200F200FttCttT22B.1.2650.002541
ORF1ab/nsp6200F200FttCttT22B.1.3490.00143
ORF1ab/nsp6200F200FttCttT22B.1.3500.005865
ORF1ab/nsp6200F200FttCttT22B.1.36.170.000988
ORF1ab/nsp6200F200FttCttT22B.1.3670.001585
ORF1ab/nsp6200F200FttCttT22B.1.4360.002058
ORF1ab/nsp6200F200FttCttT22B.1.4560.006536
ORF1ab/nsp6200F200FttCttT22B.1.5230.004902
ORF1ab/nsp6200F200FttCttT22B.1.564.10.003155
ORF1ab/nsp6200F200FttCttT22B.1.6090.000959
ORF1ab/nsp6200F200FttCttT22B.1.6190.001742
ORF1ab/nsp6200F200FttCttT22P.1.160.000748
ORF1ab/nsp6200F200FttCttT22P.1.170.000324
ORF1ab/nsp6200F200FttCttT22P.1.20.002312
ORF1ab/nsp6200F200FttCttT11A.290.005319
ORF1ab/nsp6200F200FttCttT11AD.20.000219
ORF1ab/nsp6200F200FttCttT11AS.10.009524
ORF1ab/nsp6200F200FttCttT11AU.20.002421
ORF1ab/nsp6200F200FttCttT11AW.10.003049
ORF1ab/nsp6200F200FttCttT11AY.10.000396
ORF1ab/nsp6200F200FttCttT11AY.1010.00049
ORF1ab/nsp6200F200FttCttT11AY.1060.000335
ORF1ab/nsp6200F200FttCttT11AY.1080.001103
ORF1ab/nsp6200F200FttCttT11AY.1100.000113
ORF1ab/nsp6200F200FttCttT11AY.1140.000231
ORF1ab/nsp6200F200FttCttT11AY.1160.000287
ORF1ab/nsp6200F200FttCttT11AY.116.10.000311
ORF1ab/nsp6200F200FttCttT11AY.120.000316
ORF1ab/nsp6200F200FttCttT11AY.120.20.001285
ORF1ab/nsp6200F200FttCttT11AY.120.2.10.000498
ORF1ab/nsp6200F200FttCttT11AY.140.000088
ORF1ab/nsp6200F200FttCttT11AY.160.00038
ORF1ab/nsp6200F200FttCttT11AY.16.10.00047
ORF1ab/nsp6200F200FttCttT11AY.34.10.00051
ORF1ab/nsp6200F200FttCttT11AY.370.000316
ORF1ab/nsp6200F200FttCttT11AY.380.000499
ORF1ab/nsp6200F200FttCttT11AY.410.000294
ORF1ab/nsp6200F200FttCttT11AY.490.003195
ORF1ab/nsp6200F200FttCttT11AY.5.40.000277
ORF1ab/nsp6200F200FttCttT11AY.510.000909
ORF1ab/nsp6200F200FttCttT11AY.580.000907
ORF1ab/nsp6200F200FttCttT11AY.640.000595
ORF1ab/nsp6200F200FttCttT11AY.700.000209
ORF1ab/nsp6200F200FttCttT11AY.740.000116
ORF1ab/nsp6200F200FttCttT11AY.780.001541
ORF1ab/nsp6200F200FttCttT11AY.820.001357
ORF1ab/nsp6200F200FttCttT11AY.850.000427
ORF1ab/nsp6200F200FttCttT11AY.890.004902
ORF1ab/nsp6200F200FttCttT11AZ.30.00152
ORF1ab/nsp6200F200FttCttT11AZ.50.003509
ORF1ab/nsp6200F200FttCttT11B.1.1.1280.007092
ORF1ab/nsp6200F200FttCttT11B.1.1.1760.000439
ORF1ab/nsp6200F200FttCttT11B.1.1.1810.004545
ORF1ab/nsp6200F200FttCttT11B.1.1.1960.005714
ORF1ab/nsp6200F200FttCttT11B.1.1.2290.005747
ORF1ab/nsp6200F200FttCttT11B.1.1.2410.00207
ORF1ab/nsp6200F200FttCttT11B.1.1.2650.003155
ORF1ab/nsp6200F200FttCttT11B.1.1.3050.003861
ORF1ab/nsp6200F200FttCttT11B.1.1.3060.000438
ORF1ab/nsp6200F200FttCttT11B.1.1.3120.001912
ORF1ab/nsp6200F200FttCttT11B.1.1.3620.005618
ORF1ab/nsp6200F200FttCttT11B.1.1.3680.003086
ORF1ab/nsp6200F200FttCttT11B.1.1.370.000193
ORF1ab/nsp6200F200FttCttT11B.1.1.3740.002375
ORF1ab/nsp6200F200FttCttT11B.1.1.4200.001006
ORF1ab/nsp6200F200FttCttT11B.1.1.4340.000349
ORF1ab/nsp6200F200FttCttT11B.1.1.500.000679
ORF1ab/nsp6200F200FttCttT11B.1.1.890.006061
ORF1ab/nsp6200F200FttCttT11B.1.1110.001175
ORF1ab/nsp6200F200FttCttT11B.1.160.220.006757
ORF1ab/nsp6200F200FttCttT11B.1.177.190.001431
ORF1ab/nsp6200F200FttCttT11B.1.177.330.001645
ORF1ab/nsp6200F200FttCttT11B.1.177.450.000381
ORF1ab/nsp6200F200FttCttT11B.1.177.500.004695
ORF1ab/nsp6200F200FttCttT11B.1.177.530.002392
ORF1ab/nsp6200F200FttCttT11B.1.177.60.000977
ORF1ab/nsp6200F200FttCttT11B.1.177.670.007634
ORF1ab/nsp6200F200FttCttT11B.1.2140.003663
ORF1ab/nsp6200F200FttCttT11B.1.214.30.007143
ORF1ab/nsp6200F200FttCttT11B.1.2380.014925
ORF1ab/nsp6200F200FttCttT11B.1.258.140.00098
ORF1ab/nsp6200F200FttCttT11B.1.258.170.000104
ORF1ab/nsp6200F200FttCttT11B.1.258.220.002667
ORF1ab/nsp6200F200FttCttT11B.1.2630.047619
ORF1ab/nsp6200F200FttCttT11B.1.264.10.047619
ORF1ab/nsp6200F200FttCttT11B.1.2980.002114
ORF1ab/nsp6200F200FttCttT11B.1.3110.000275
ORF1ab/nsp6200F200FttCttT11B.1.3380.008621
ORF1ab/nsp6200F200FttCttT11B.1.3410.022727
ORF1ab/nsp6200F200FttCttT11B.1.351.50.0006
ORF1ab/nsp6200F200FttCttT11B.1.36.100.004785
ORF1ab/nsp6200F200FttCttT11B.1.36.180.00042
ORF1ab/nsp6200F200FttCttT11B.1.3990.001934
ORF1ab/nsp6200F200FttCttT11B.1.4210.007463
ORF1ab/nsp6200F200FttCttT11B.1.4350.011364
ORF1ab/nsp6200F200FttCttT11B.1.466.20.000391
ORF1ab/nsp6200F200FttCttT11B.1.4680.005714
ORF1ab/nsp6200F200FttCttT11B.1.4700.001404
ORF1ab/nsp6200F200FttCttT11B.1.5170.000427
ORF1ab/nsp6200F200FttCttT11B.1.5580.004566
ORF1ab/nsp6200F200FttCttT11B.1.5770.000687
ORF1ab/nsp6200F200FttCttT11B.1.5870.001898
ORF1ab/nsp6200F200FttCttT11B.1.5950.000261
ORF1ab/nsp6200F200FttCttT11B.1.6120.002653
ORF1ab/nsp6200F200FttCttT11B.1.6280.000352
ORF1ab/nsp6200F200FttCttT11B.1.6340.003425
ORF1ab/nsp6200F200FttCttT11B.230.002924
ORF1ab/nsp6200F200FttCttT11B.400.000364
ORF1ab/nsp6200F200FttCttT11B.550.00295
ORF1ab/nsp6200F200FttCttT11C.10.002392
ORF1ab/nsp6200F200FttCttT11C.350.000774
ORF1ab/nsp6200F200FttCttT11N.100.029412
ORF1ab/nsp6200F200FttCttT11N.30.005814
ORF1ab/nsp6200F200FttCttT11N.50.001767
ORF1ab/nsp6200F200FttCttT11P.1.10.000318
ORF1ab/nsp6200F200FttCttT11P.1.100.000269
ORF1ab/nsp6200F200FttCttT11P.1.10.10.00813
ORF1ab/nsp6200F200FttCttT11P.1.120.000484
ORF1ab/nsp6200F200FttCttT11P.1.40.000977
ORF1ab/nsp6200F200FttCttT11Q.30.000145
ORF1ab/nsp6200F200FttCttT11XA0.022222

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.