CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 200 | F200F | F3769F | syn | ttC | ttT | 21406 | 21406 | 1 | 11570-11572 |
Details of the mutation F200F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 21406 | 21406 | All | 0.004094 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11494 | 11494 | AY.103 | 0.071367 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3446 | 3446 | B.1.1.7 | 0.003085 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1480 | 1480 | B.1.2 | 0.013032 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 711 | 711 | AY.4 | 0.001107 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 586 | 586 | B.1.617.2 | 0.002207 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 245 | 245 | B.1.1 | 0.004445 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 212 | 212 | P.1.14 | 0.010134 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 177 | 177 | AY.25 | 0.001065 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 175 | 175 | AY.44 | 0.001065 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 173 | 173 | B.1.36.28 | 0.994253 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 154 | 154 | B.1.177.82 | 0.073508 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 109 | 109 | B.1.214.4 | 0.990909 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 106 | 106 | B.1.427 | 0.005353 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 97 | 97 | AY.43 | 0.00043 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 91 | 91 | B.1.177 | 0.001198 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 87 | 87 | AY.33 | 0.00581 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 83 | 83 | B.1 | 0.00076 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 83 | 83 | B.1.526 | 0.001951 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 79 | 79 | AY.3 | 0.000786 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 65 | 65 | P.1 | 0.001024 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 62 | 62 | AY.26 | 0.001755 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 58 | 58 | B.1.429 | 0.001365 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 57 | 57 | Q.8 | 0.0094 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 56 | 56 | B.1.351 | 0.001665 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 52 | 52 | AY.39.2 | 0.080123 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 47 | 47 | AY.120 | 0.001747 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 47 | 47 | B.1.565 | 0.038088 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 47 | 47 | B.1.637 | 0.003434 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 46 | 46 | B.1.160 | 0.001435 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 45 | 45 | AY.4.2 | 0.000976 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 41 | 41 | AY.39 | 0.001013 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 37 | 37 | B.1.570 | 0.108824 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 36 | 36 | AY.29 | 0.000568 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 33 | 33 | B.1.1.519 | 0.00131 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 32 | 32 | B.1.1.159 | 0.149533 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 32 | 32 | B.1.177.21 | 0.002447 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 26 | 26 | B.1.258 | 0.00173 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 24 | 24 | B.1.499 | 0.02521 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 23 | 23 | B.1.596 | 0.002004 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 21 | 21 | A | 0.008127 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 21 | 21 | B.1.1.348 | 0.01672 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 21 | 21 | B.1.93 | 0.019608 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 20 | 20 | AY.118 | 0.001253 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 17 | 17 | B.1.1.214 | 0.000943 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 16 | 16 | B.1.1.333 | 0.017223 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 15 | 15 | AY.34 | 0.001454 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 15 | 15 | B.1.222 | 0.025381 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 13 | 13 | AY.59 | 0.006886 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 13 | 13 | B.1.623 | 0.006974 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 12 | 12 | AY.30 | 0.004749 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | AY.65 | 0.005864 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | B.1.1.294 | 0.013924 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | B.1.177.16 | 0.007309 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | B.1.377 | 0.050228 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 10 | 10 | B.1.1.1 | 0.003267 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 10 | 10 | B.1.525 | 0.001132 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 9 | 9 | AY.95 | 0.006849 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 9 | 9 | B.1.1.318 | 0.002716 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 9 | 9 | B.1.527 | 0.033333 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 8 | 8 | B.1.149 | 0.027397 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | AY.55 | 0.006422 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 6 | 6 | A.28 | 0.015873 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 6 | 6 | C.2.1 | 0.04 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.206 | 0.004078 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.306 | 0.028571 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | B.1.524 | 0.007032 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 5 | 5 | C.11 | 0.053191 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | 0.222222 | |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.1.291 | 0.00297 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.210 | 0.008529 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.324 | 0.006421 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.1.145 | 0.111111 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.1.339 | 0.031579 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.408 | 0.01107 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | P.6 | 0.009434 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.234 | 0.024096 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.329 | 0.007692 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.350 | 0.005865 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.263 | 0.047619 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.341 | 0.022727 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.435 | 0.011364 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | N.10 | 0.029412 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp6 | 200 | F200F | ttC | ttT | 1 | 1 | XA | 0.022222 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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